jgi.p|Nanoce1779_2|606799, mRNA_9185 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606799
Unique NamemRNA_9185
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1256
Alignment locationscaffold_36:165160..166512 -

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Properties
Property NameValue
TranscriptId606885
TrackFilteredModels2
ProteinId606799
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:165160..166512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606799gene_9185Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606799mRNA_9185-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9185CDS_9185Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9185 ID=mRNA_9185|Name=jgi.p|Nanoce1779_2|606799|organism=Nannochloropsis oceanica|type=mRNA|length=1256bp
AGTCCCCATCATCATCATCATCTCAACAGGACACAAGACCATGGGAGACT
TCGACGACGACGATTTGGATGCCATGCTGGCGGCGGAGGAGGCCATGGAG
CAGGAACAGATGGCCGCCATGGATGCGACGTACGCAGATTTTGACCCGGG
GGACAGCCGCTCCTCAAATGACACATCGCAGCCAGCAGCCGCCGCACTGC
ATGCAGGCAAGGTCGGCTCCCCTGCGGCTGCTCCTCGGCGCCGCATCGTG
GGGACCAATGATGACGACGTGGACGACATGTGTGCTGACGAGGATAATGC
GGCCGCCGCCAATTTTGCTGACGAGGATAATGCAGCCGCTGCCAATTTTG
CCGATTCCATGGCGGAGGATGCACCAGCTAAATCCATGTTTGCTCGGGGC
GGCACCACCGAGGACGCGGAGGCAGCTAAGCGGGCCAAGTTTCTCTCGCG
GCCCGCCCTGTTGGCCCTGCGCCTGGGCAAGGAAGGAACTTGGAGGAAGC
GGGAGCAACAAGAACGCAAGATAGAAGGTCTACCCGATATGGAAAGCGAC
GACTGGCGCCGGGCAGGCGGGAAGGCGGTCGGGAGACCAGGAGGCATCGG
CAGCAACGGGAAGGTCAGCAGTGGTCGGACCGCCGGCTTTAAGCGCCGCA
AGCTCTTGAGCAGCAAGAGCGGGATAACGGACGAGCCCGTGGCTTTTGGC
CTGGAGAGCTTGGTATTTGTCACGGCCCCAGCCAATTCCGAACCACCCCG
CCTGCCGCGTTCGACGCGGGCGAAGCACCTTCTGACGCGGCCGCCGATGC
TGGGCAACAGCCTCTCGCTGCTGACTGCGACGGGCAGCATGGTCTATTTA
CGCACGGCCAAGGCAACGGTAGGGACGAAGGACAATGGAGAACGAACGGA
TGAGGGGAATGTGGACGCGACACTGCCTCTGGGCAGCCGGTTGGCGAAGC
TTCATGGCGATGTGGCGGCCGTGAGGTTGGACGGCGGGGCCGGCGGGTTG
TTGTCGCTGCCGATGCACGAGCTTATGAAGAAGGTAGAACACCGACGGTA
CGCACGCTCAAGGACGTCTCAGATCCTCCTGCAGGCCAGACTGCAGAATG
CTGATTCCGCCACGATGAGACTGCGAGAGGAGAAAGTTCGGGAGGAGAAA
GACGAAGACAAAGAGGAGGGAGGTGGGAAAAAAAAGCAGGAGGAGCAGGA
GGAGCAGGATGGGGAGGAGGAGCAGGAGAGGGAGGAGGAGACGGAGGAGA
AGGAGG
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protein sequence of jgi.p|Nanoce1779_2|606799

>mRNA_9185-protein ID=mRNA_9185-protein|Name=jgi.p|Nanoce1779_2|606799|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MPCWRRRRPWSRNRWPPWMRRTQILTRGTAAPQMTHRSQQPPHCMQARSA
PLRLLLGAASWGPMMTTWTTCVLTRIMRPPPILLTRIMQPLPILPIPWRR
MHQLNPCLLGAAPPRTRRQLSGPSFSRGPPCWPCAWARKELGGSGSNKNA
R*
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mRNA from alignment at scaffold_36:165160..166512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9185 ID=mRNA_9185|Name=jgi.p|Nanoce1779_2|606799|organism=Nannochloropsis oceanica|type=mRNA|length=1353bp|location=Sequence derived from alignment at scaffold_36:165160..166512- (Nannochloropsis oceanica)
AGTCCCCATCATCATCATCATCTCAACAGGACACAAGACCATGGGAGACT
TCGACGACGACGATTTGGATGCCATGCTGGCGGCGGAGGAGGCCATGGAG
CAGGAACAGATGGCCGCCATGGATGCGGTACGTGCTTTCCCCCCTTATTT
CCTCTTTCCCCCTCATTTTTCTACGTCCTCCCCACCTGCACAACACACCA
AACCCTGCCCACGCAACCAACCAGACGTACGCAGATTTTGACCCGGGGGA
CAGCCGCTCCTCAAATGACACATCGCAGCCAGCAGCCGCCGCACTGCATG
CAGGCAAGGTCGGCTCCCCTGCGGCTGCTCCTCGGCGCCGCATCGTGGGG
ACCAATGATGACGACGTGGACGACATGTGTGCTGACGAGGATAATGCGGC
CGCCGCCAATTTTGCTGACGAGGATAATGCAGCCGCTGCCAATTTTGCCG
ATTCCATGGCGGAGGATGCACCAGCTAAATCCATGTTTGCTCGGGGCGGC
ACCACCGAGGACGCGGAGGCAGCTAAGCGGGCCAAGTTTCTCTCGCGGCC
CGCCCTGTTGGCCCTGCGCCTGGGCAAGGAAGGAACTTGGAGGAAGCGGG
AGCAACAAGAACGCAAGATAGAAGGTCTACCCGATATGGAAAGCGACGAC
TGGCGCCGGGCAGGCGGGAAGGCGGTCGGGAGACCAGGAGGCATCGGCAG
CAACGGGAAGGTCAGCAGTGGTCGGACCGCCGGCTTTAAGCGCCGCAAGC
TCTTGAGCAGCAAGAGCGGGATAACGGACGAGCCCGTGGCTTTTGGCCTG
GAGAGCTTGGTATTTGTCACGGCCCCAGCCAATTCCGAACCACCCCGCCT
GCCGCGTTCGACGCGGGCGAAGCACCTTCTGACGCGGCCGCCGATGCTGG
GCAACAGCCTCTCGCTGCTGACTGCGACGGGCAGCATGGTCTATTTACGC
ACGGCCAAGGCAACGGTAGGGACGAAGGACAATGGAGAACGAACGGATGA
GGGGAATGTGGACGCGACACTGCCTCTGGGCAGCCGGTTGGCGAAGCTTC
ATGGCGATGTGGCGGCCGTGAGGTTGGACGGCGGGGCCGGCGGGTTGTTG
TCGCTGCCGATGCACGAGCTTATGAAGAAGGTAGAACACCGACGGTACGC
ACGCTCAAGGACGTCTCAGATCCTCCTGCAGGCCAGACTGCAGAATGCTG
ATTCCGCCACGATGAGACTGCGAGAGGAGAAAGTTCGGGAGGAGAAAGAC
GAAGACAAAGAGGAGGGAGGTGGGAAAAAAAAGCAGGAGGAGCAGGAGGA
GCAGGATGGGGAGGAGGAGCAGGAGAGGGAGGAGGAGACGGAGGAGAAGG
AGG
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Coding sequence (CDS) from alignment at scaffold_36:165160..166512-

>mRNA_9185 ID=mRNA_9185|Name=jgi.p|Nanoce1779_2|606799|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_36:165160..166512- (Nannochloropsis oceanica)
ACGTACGCAGATTTTGACCCGGGGGACAGCCGCTCCTCAAATGACACATC
GCAGCCAGCAGCCGCCGCACTGCATGCAGGCAAGGTCGGCTCCCCTGCGG
CTGCTCCTCGGCGCCGCATCGTGGGGACCAATGATGACGACGTGGACGAC
ATGTGTGCTGACGAGGATAATGCGGCCGCCGCCAATTTTGCTGACGAGGA
TAATGCAGCCGCTGCCAATTTTGCCGATTCCATGGCGGAGGATGCACCAG
CTAAATCCATGTTTGCTCGGGGCGGCACCACCGAGGACGCGGAGGCAGCT
AAGCGGGCCAAGTTTCTCTCGCGGCCCGCCCTGTTGGCCCTGCGCCTGGG
CAAGGAAGGAACTTGGAGGAAGCGGGAGCAACAAGAACGCAAGATAGATG
CCATGCTGGCGGCGGAGGAGGCCATGGAGCAGGAACAGATGGCCGCCATG
GATGCGACGTACGCAGATTTTGACCCGGGGGACAGCCGCTCCTCAAATGA
CACATCGCAGCCAGCAGCCGCCGCACTGCATGCAGGCAAGGTCGGCTCCC
CTGCGGCTGCTCCTCGGCGCCGCATCGTGGGGACCAATGATGACGACGTG
GACGACATGTGTGCTGACGAGGATAATGCGGCCGCCGCCAATTTTGCTGA
CGAGGATAATGCAGCCGCTGCCAATTTTGCCGATTCCATGGCGGAGGATG
CACCAGCTAAATCCATGTTTGCTCGGGGCGGCACCACCGAGGACGCGGAG
GCAGCTAAGCGGGCCAAGTTTCTCTCGCGGCCCGCCCTGTTGGCCCTGCG
CCTGGGCAAGGAAGGAACTTGGAGGAAGCGGGAGCAACAAGAACGCAAGA
TAGATGCCATGCTGGCGGCGGAGGAGGCCATGGAGCAGGAACAGATGGCC
GCCATGGATGCG
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Synonyms
Publications