jgi.p|Nanoce1779_2|606796, mRNA_9184 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606796
Unique Name	mRNA_9184
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2781
Alignment location	scaffold_36:162487..165267 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606882
Track	FilteredModels2
ProteinId	606796

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:162487..165267 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606796	gene_9184	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606796	mRNA_9184-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9184	CDS_9184	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:162487..165267-
coding sequence from alignment at scaffold_36:162487..165267-

mRNA sequence

>mRNA_9184 ID=mRNA_9184|Name=jgi.p|Nanoce1779_2|606796|organism=Nannochloropsis oceanica|type=mRNA|length=2781bp
AAGACGAAGACAAAGAGGAGGGAGGTGGGAAAAAAAAGCAGGAGGAGCAG
GAGGAGCAGGATGGGGAGGAGGAGCAGGAGAGGGAGGAGGAGACGGAGGA
GAAGGAGGAGGAGGAGGACATGGGGACAAATGGAAGTGGCGAGGCCGCCA
GGACGCTCCAAAATATGGCTCCAGCCCCACGGCCAGAGCAATTGTGGGTG
AACCGGTACTCTCCGTCCGCCTTCCCCCACCTCCTGAGTGACGAGGCCAC
CAATCGGGAGGTGCTGCGTTTACTGCGCTCTTGGGATGAGTTTGTCTTCA
AGAGGGCCGTGCCCAAAACGCTTGCCGAGGCGCCCGCACAGCCAGCCTGG
AAGACCAACTGGAATAACAAGAACAATAATCAGGACAAGGACAGAGGTAG
CAACCAGCAGCAGCATCGCAACGGTGGCGGCACGGGCAGCAACCCCATGT
TAACCCCGCGGGAACGAGCCTCGATGGACGCCGAGCGGGAGGCGGCGGCA
GTGCAGCGGCGCGACAAACGACCCAAGGAACAGGCGCGGGCCATCCTTCT
GTGCGGGCCGCCAGGCATGGGAAAGACGACGCTGGCGCACGTGGTGGCAG
CTCACTGCGGTTACCGACCCCTGGAGTTCAACGCTTCAGACGACCGGTCG
GCGGCCGTGCTGCAAGAGAAGATAACGCGGGCCATGCAGAACCAGGCCGT
GCTGGGCGACAAGCGGCCCAATTGCATAATCCTCGACGAGGCAGACGGCA
TTGACGGCAAGACGGGCATCAAGATGATCGTGGACATGATCAAGGCGCCG
CTCAAGAGCGACGCGGCCGGCGGCAAGAAGAAAAGTGGCGGCGACGGGAG
TGCCTCGGTGCCCGCCCTGACGCGGCCCCTAATTTGCATCTGCAATGACC
TGTACGCACCCCAGCTGCGGCCCCTGCGCGACGTGGCTACCGTTTTCCGA
TTCCGCAAGACATCCAGCACGCGCCTGCTGCAGCGCCTCAAGACCATCTG
TCTGGCTGAGAGCCTGCCGCTGGAGAGCACGGCTCTGGGCGCTCTTTGCG
AGGCCGCAGGCAACGATGTCCGCTCCTGCCTCAACACACTCCAATTCTTC
AAGTCCCGCGTACCCCAGCCGACGGGCGGAGAGGCCGCGGGGGGCGTGGG
GCAGGCGGCGCGGGCCTCTGCGCTGTCTCGACAGCTGATGCAGCACATCG
GGGCGGGGCTGAAGGACCAGGAGAAGGACATGCTCCAGGTGTGCAACGCG
ATCTTCCGCAAGCCACAGGCCAAAACCTCGGCAACCGCCACGGCCACGGT
CCTGCTCCTGCCGGGCGAGGAGGAGGAGGAAGAGGCTACGAGGCGGGACG
GGCAGCCGTACTCCTCCTCTTCCTCCCCCTCTCACCGAAAGCAGCGCGAT
ACAGACATGGTCATCTCCACCGTGGCCGCCTTCAGCGACCATGGGCAAGT
GCTGCAGGCAGCGCACGAGAACTTCTGCCAGATGCGGTACACAGACCCGA
ACCTGACTAAGACTGCACTGGCGGCCGAGTGGCTGGCCTTCTCGGACCTG
ATCCATGGCCGGCAGCTGGAGGGCCGGTGCCACTTGATGGAGGATCTGCA
CCTGGCCACGGCTGCTGCCATACATCTTCTCTGCCGTGTCGAGGTACGCC
CGCGCATTACGCTGCCACGAAAGGATTACGAGTTCCGGAGCGCGCGCCTG
AGCCGGCAGCACATTCTTCAATCCTTCACGGAGGGTTGCGTGTTGCAGGC
ACTCTGGGCGCGGCACCCGGCCGCCATCGTGCTGGACGTAGTCTCTCCGC
TAGTGCACATTCTGAACCCCAGCCTGCGGCCCATCAACCCCGACCTGTAC
TCCTTTGCGGAGAAGGCTATGCTGCGGCAGCTGGTCGGTGTCATGATGGC
CTGCGGTGTTTCCTTCATGCATACGAACCGGGCCGGCCTCTATTCCCATC
AACAGGGAGCGCACGACCCGCTGGAGATGGTCCCCATGCTAGTGCATCTG
GCTGAGTTTGGCCTGTCCAACGACGGAAGCGGGGCACCGAAGGACGAGGC
CCTGCCCGTGCAGCGACCCCGGCCCGCGCGTGTCCTGCCGACCTTCGTCA
AACTGCTAGCCACTCAGGAGGCCAAGCTGGAGGTCATGAAGCAGGCCGAG
TGCCGCAAGGCGGATGCGATAAAGGCCAGGCACGGCGGCGTCTTACCTAC
GGCCTTGAATAAAAAGGCCGAGCGTCCCGGCCATGCCCTCCCATCGTTCT
CTACGCCTTCTCCTGCCGACACCAAGAAGCCCCGGTTCGGCGCTGCCAAC
TTGTCGGCCAAGCTGTTGATGCCTGACATGAAGGAGGAGCCTACGCACAA
AACGTGGTTTGTAAAGCTAGGCACAAAGCGCAGCACCTCTAAAGCCAAGC
CCAGCATCAGTTACAATGACCGGTTGGACGCCCTTCAGCAGCAGGGGCAG
GACGGGGGATCTCATCATTCAGGCGAGGCAAGGCAGCAGCCAGCGACAAA
CAAGGCGACCATCCGCTTCAAGTACGTGGCTGGCTACACTAACGCAGTCC
GTCGTCCGGTTTGTATGAAGGATATGCTTTAGAAAAGCTCGGGTGGTACA
AGCGAGGGCATGGGATGGGATCGTAACAGTAAAGTGCGAAAAAAGCAAAG
TCGGCAAGAACCAGTGAACGGAAAAGTCAATTAAAGGCGGTCTTGTATCT
TTTAATAGGTGTAACAGCATAGGAATTGTGTTGCGAGCAGTATCTACTCG
TCGAAAGCAAACAGGAAACGTGAGCTTTGCA

protein sequence of jgi.p|Nanoce1779_2|606796

>mRNA_9184-protein ID=mRNA_9184-protein|Name=jgi.p|Nanoce1779_2|606796|organism=Nannochloropsis oceanica|type=polypeptide|length=821bp
MGTNGSGEAARTLQNMAPAPRPEQLWVNRYSPSAFPHLLSDEATNREVLR
LLRSWDEFVFKRAVPKTLAEAPAQPAWKTNWNNKNNNQDKDRGSNQQQHR
NGGGTGSNPMLTPRERASMDAEREAAAVQRRDKRPKEQARAILLCGPPGM
GKTTLAHVVAAHCGYRPLEFNASDDRSAAVLQEKITRAMQNQAVLGDKRP
NCIILDEADGIDGKTGIKMIVDMIKAPLKSDAAGGKKKSGGDGSASVPAL
TRPLICICNDLYAPQLRPLRDVATVFRFRKTSSTRLLQRLKTICLAESLP
LESTALGALCEAAGNDVRSCLNTLQFFKSRVPQPTGGEAAGGVGQAARAS
ALSRQLMQHIGAGLKDQEKDMLQVCNAIFRKPQAKTSATATATVLLLPGE
EEEEEATRRDGQPYSSSSSPSHRKQRDTDMVISTVAAFSDHGQVLQAAHE
NFCQMRYTDPNLTKTALAAEWLAFSDLIHGRQLEGRCHLMEDLHLATAAA
IHLLCRVEVRPRITLPRKDYEFRSARLSRQHILQSFTEGCVLQALWARHP
AAIVLDVVSPLVHILNPSLRPINPDLYSFAEKAMLRQLVGVMMACGVSFM
HTNRAGLYSHQQGAHDPLEMVPMLVHLAEFGLSNDGSGAPKDEALPVQRP
RPARVLPTFVKLLATQEAKLEVMKQAECRKADAIKARHGGVLPTALNKKA
ERPGHALPSFSTPSPADTKKPRFGAANLSAKLLMPDMKEEPTHKTWFVKL
GTKRSTSKAKPSISYNDRLDALQQQGQDGGSHHSGEARQQPATNKATIRF
KYVAGYTNAVRRPVCMKDML*

mRNA from alignment at scaffold_36:162487..165267-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9184 ID=mRNA_9184|Name=jgi.p|Nanoce1779_2|606796|organism=Nannochloropsis oceanica|type=mRNA|length=2781bp|location=Sequence derived from alignment at scaffold_36:162487..165267- (Nannochloropsis oceanica)
AAGACGAAGACAAAGAGGAGGGAGGTGGGAAAAAAAAGCAGGAGGAGCAG
GAGGAGCAGGATGGGGAGGAGGAGCAGGAGAGGGAGGAGGAGACGGAGGA
GAAGGAGGAGGAGGAGGACATGGGGACAAATGGAAGTGGCGAGGCCGCCA
GGACGCTCCAAAATATGGCTCCAGCCCCACGGCCAGAGCAATTGTGGGTG
AACCGGTACTCTCCGTCCGCCTTCCCCCACCTCCTGAGTGACGAGGCCAC
CAATCGGGAGGTGCTGCGTTTACTGCGCTCTTGGGATGAGTTTGTCTTCA
AGAGGGCCGTGCCCAAAACGCTTGCCGAGGCGCCCGCACAGCCAGCCTGG
AAGACCAACTGGAATAACAAGAACAATAATCAGGACAAGGACAGAGGTAG
CAACCAGCAGCAGCATCGCAACGGTGGCGGCACGGGCAGCAACCCCATGT
TAACCCCGCGGGAACGAGCCTCGATGGACGCCGAGCGGGAGGCGGCGGCA
GTGCAGCGGCGCGACAAACGACCCAAGGAACAGGCGCGGGCCATCCTTCT
GTGCGGGCCGCCAGGCATGGGAAAGACGACGCTGGCGCACGTGGTGGCAG
CTCACTGCGGTTACCGACCCCTGGAGTTCAACGCTTCAGACGACCGGTCG
GCGGCCGTGCTGCAAGAGAAGATAACGCGGGCCATGCAGAACCAGGCCGT
GCTGGGCGACAAGCGGCCCAATTGCATAATCCTCGACGAGGCAGACGGCA
TTGACGGCAAGACGGGCATCAAGATGATCGTGGACATGATCAAGGCGCCG
CTCAAGAGCGACGCGGCCGGCGGCAAGAAGAAAAGTGGCGGCGACGGGAG
TGCCTCGGTGCCCGCCCTGACGCGGCCCCTAATTTGCATCTGCAATGACC
TGTACGCACCCCAGCTGCGGCCCCTGCGCGACGTGGCTACCGTTTTCCGA
TTCCGCAAGACATCCAGCACGCGCCTGCTGCAGCGCCTCAAGACCATCTG
TCTGGCTGAGAGCCTGCCGCTGGAGAGCACGGCTCTGGGCGCTCTTTGCG
AGGCCGCAGGCAACGATGTCCGCTCCTGCCTCAACACACTCCAATTCTTC
AAGTCCCGCGTACCCCAGCCGACGGGCGGAGAGGCCGCGGGGGGCGTGGG
GCAGGCGGCGCGGGCCTCTGCGCTGTCTCGACAGCTGATGCAGCACATCG
GGGCGGGGCTGAAGGACCAGGAGAAGGACATGCTCCAGGTGTGCAACGCG
ATCTTCCGCAAGCCACAGGCCAAAACCTCGGCAACCGCCACGGCCACGGT
CCTGCTCCTGCCGGGCGAGGAGGAGGAGGAAGAGGCTACGAGGCGGGACG
GGCAGCCGTACTCCTCCTCTTCCTCCCCCTCTCACCGAAAGCAGCGCGAT
ACAGACATGGTCATCTCCACCGTGGCCGCCTTCAGCGACCATGGGCAAGT
GCTGCAGGCAGCGCACGAGAACTTCTGCCAGATGCGGTACACAGACCCGA
ACCTGACTAAGACTGCACTGGCGGCCGAGTGGCTGGCCTTCTCGGACCTG
ATCCATGGCCGGCAGCTGGAGGGCCGGTGCCACTTGATGGAGGATCTGCA
CCTGGCCACGGCTGCTGCCATACATCTTCTCTGCCGTGTCGAGGTACGCC
CGCGCATTACGCTGCCACGAAAGGATTACGAGTTCCGGAGCGCGCGCCTG
AGCCGGCAGCACATTCTTCAATCCTTCACGGAGGGTTGCGTGTTGCAGGC
ACTCTGGGCGCGGCACCCGGCCGCCATCGTGCTGGACGTAGTCTCTCCGC
TAGTGCACATTCTGAACCCCAGCCTGCGGCCCATCAACCCCGACCTGTAC
TCCTTTGCGGAGAAGGCTATGCTGCGGCAGCTGGTCGGTGTCATGATGGC
CTGCGGTGTTTCCTTCATGCATACGAACCGGGCCGGCCTCTATTCCCATC
AACAGGGAGCGCACGACCCGCTGGAGATGGTCCCCATGCTAGTGCATCTG
GCTGAGTTTGGCCTGTCCAACGACGGAAGCGGGGCACCGAAGGACGAGGC
CCTGCCCGTGCAGCGACCCCGGCCCGCGCGTGTCCTGCCGACCTTCGTCA
AACTGCTAGCCACTCAGGAGGCCAAGCTGGAGGTCATGAAGCAGGCCGAG
TGCCGCAAGGCGGATGCGATAAAGGCCAGGCACGGCGGCGTCTTACCTAC
GGCCTTGAATAAAAAGGCCGAGCGTCCCGGCCATGCCCTCCCATCGTTCT
CTACGCCTTCTCCTGCCGACACCAAGAAGCCCCGGTTCGGCGCTGCCAAC
TTGTCGGCCAAGCTGTTGATGCCTGACATGAAGGAGGAGCCTACGCACAA
AACGTGGTTTGTAAAGCTAGGCACAAAGCGCAGCACCTCTAAAGCCAAGC
CCAGCATCAGTTACAATGACCGGTTGGACGCCCTTCAGCAGCAGGGGCAG
GACGGGGGATCTCATCATTCAGGCGAGGCAAGGCAGCAGCCAGCGACAAA
CAAGGCGACCATCCGCTTCAAGTACGTGGCTGGCTACACTAACGCAGTCC
GTCGTCCGGTTTGTATGAAGGATATGCTTTAGAAAAGCTCGGGTGGTACA
AGCGAGGGCATGGGATGGGATCGTAACAGTAAAGTGCGAAAAAAGCAAAG
TCGGCAAGAACCAGTGAACGGAAAAGTCAATTAAAGGCGGTCTTGTATCT
TTTAATAGGTGTAACAGCATAGGAATTGTGTTGCGAGCAGTATCTACTCG
TCGAAAGCAAACAGGAAACGTGAGCTTTGCA

Coding sequence (CDS) from alignment at scaffold_36:162487..165267-

>mRNA_9184 ID=mRNA_9184|Name=jgi.p|Nanoce1779_2|606796|organism=Nannochloropsis oceanica|type=CDS|length=2463bp|location=Sequence derived from alignment at scaffold_36:162487..165267- (Nannochloropsis oceanica)
ATGGGGACAAATGGAAGTGGCGAGGCCGCCAGGACGCTCCAAAATATGGC
TCCAGCCCCACGGCCAGAGCAATTGTGGGTGAACCGGTACTCTCCGTCCG
CCTTCCCCCACCTCCTGAGTGACGAGGCCACCAATCGGGAGGTGCTGCGT
TTACTGCGCTCTTGGGATGAGTTTGTCTTCAAGAGGGCCGTGCCCAAAAC
GCTTGCCGAGGCGCCCGCACAGCCAGCCTGGAAGACCAACTGGAATAACA
AGAACAATAATCAGGACAAGGACAGAGGTAGCAACCAGCAGCAGCATCGC
AACGGTGGCGGCACGGGCAGCAACCCCATGTTAACCCCGCGGGAACGAGC
CTCGATGGACGCCGAGCGGGAGGCGGCGGCAGTGCAGCGGCGCGACAAAC
GACCCAAGGAACAGGCGCGGGCCATCCTTCTGTGCGGGCCGCCAGGCATG
GGAAAGACGACGCTGGCGCACGTGGTGGCAGCTCACTGCGGTTACCGACC
CCTGGAGTTCAACGCTTCAGACGACCGGTCGGCGGCCGTGCTGCAAGAGA
AGATAACGCGGGCCATGCAGAACCAGGCCGTGCTGGGCGACAAGCGGCCC
AATTGCATAATCCTCGACGAGGCAGACGGCATTGACGGCAAGACGGGCAT
CAAGATGATCGTGGACATGATCAAGGCGCCGCTCAAGAGCGACGCGGCCG
GCGGCAAGAAGAAAAGTGGCGGCGACGGGAGTGCCTCGGTGCCCGCCCTG
ACGCGGCCCCTAATTTGCATCTGCAATGACCTGTACGCACCCCAGCTGCG
GCCCCTGCGCGACGTGGCTACCGTTTTCCGATTCCGCAAGACATCCAGCA
CGCGCCTGCTGCAGCGCCTCAAGACCATCTGTCTGGCTGAGAGCCTGCCG
CTGGAGAGCACGGCTCTGGGCGCTCTTTGCGAGGCCGCAGGCAACGATGT
CCGCTCCTGCCTCAACACACTCCAATTCTTCAAGTCCCGCGTACCCCAGC
CGACGGGCGGAGAGGCCGCGGGGGGCGTGGGGCAGGCGGCGCGGGCCTCT
GCGCTGTCTCGACAGCTGATGCAGCACATCGGGGCGGGGCTGAAGGACCA
GGAGAAGGACATGCTCCAGGTGTGCAACGCGATCTTCCGCAAGCCACAGG
CCAAAACCTCGGCAACCGCCACGGCCACGGTCCTGCTCCTGCCGGGCGAG
GAGGAGGAGGAAGAGGCTACGAGGCGGGACGGGCAGCCGTACTCCTCCTC
TTCCTCCCCCTCTCACCGAAAGCAGCGCGATACAGACATGGTCATCTCCA
CCGTGGCCGCCTTCAGCGACCATGGGCAAGTGCTGCAGGCAGCGCACGAG
AACTTCTGCCAGATGCGGTACACAGACCCGAACCTGACTAAGACTGCACT
GGCGGCCGAGTGGCTGGCCTTCTCGGACCTGATCCATGGCCGGCAGCTGG
AGGGCCGGTGCCACTTGATGGAGGATCTGCACCTGGCCACGGCTGCTGCC
ATACATCTTCTCTGCCGTGTCGAGGTACGCCCGCGCATTACGCTGCCACG
AAAGGATTACGAGTTCCGGAGCGCGCGCCTGAGCCGGCAGCACATTCTTC
AATCCTTCACGGAGGGTTGCGTGTTGCAGGCACTCTGGGCGCGGCACCCG
GCCGCCATCGTGCTGGACGTAGTCTCTCCGCTAGTGCACATTCTGAACCC
CAGCCTGCGGCCCATCAACCCCGACCTGTACTCCTTTGCGGAGAAGGCTA
TGCTGCGGCAGCTGGTCGGTGTCATGATGGCCTGCGGTGTTTCCTTCATG
CATACGAACCGGGCCGGCCTCTATTCCCATCAACAGGGAGCGCACGACCC
GCTGGAGATGGTCCCCATGCTAGTGCATCTGGCTGAGTTTGGCCTGTCCA
ACGACGGAAGCGGGGCACCGAAGGACGAGGCCCTGCCCGTGCAGCGACCC
CGGCCCGCGCGTGTCCTGCCGACCTTCGTCAAACTGCTAGCCACTCAGGA
GGCCAAGCTGGAGGTCATGAAGCAGGCCGAGTGCCGCAAGGCGGATGCGA
TAAAGGCCAGGCACGGCGGCGTCTTACCTACGGCCTTGAATAAAAAGGCC
GAGCGTCCCGGCCATGCCCTCCCATCGTTCTCTACGCCTTCTCCTGCCGA
CACCAAGAAGCCCCGGTTCGGCGCTGCCAACTTGTCGGCCAAGCTGTTGA
TGCCTGACATGAAGGAGGAGCCTACGCACAAAACGTGGTTTGTAAAGCTA
GGCACAAAGCGCAGCACCTCTAAAGCCAAGCCCAGCATCAGTTACAATGA
CCGGTTGGACGCCCTTCAGCAGCAGGGGCAGGACGGGGGATCTCATCATT
CAGGCGAGGCAAGGCAGCAGCCAGCGACAAACAAGGCGACCATCCGCTTC
AAGTACGTGGCTGGCTACACTAACGCAGTCCGTCGTCCGGTTTGTATGAA
GGATATGCTTTAG

Synonyms

Publications