jgi.p|Nanoce1779_2|274532, mRNA_9182 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|274532
Unique Name	mRNA_9182
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1380
Alignment location	scaffold_36:156416..157901 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	274618
Track	FilteredModels2
ProteinId	274532

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:156416..157901 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|274532	gene_9182	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|274532	mRNA_9182-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9182	CDS_9182	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:156416..157901+
coding sequence from alignment at scaffold_36:156416..157901+

mRNA sequence

>mRNA_9182 ID=mRNA_9182|Name=jgi.p|Nanoce1779_2|274532|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp
GACTATTTAAACCTCCGCGTCTATACCTGGCATGTTTGGGATCATGGTGG
TTTTGAATGAGAACAGTTAATTTATACACTGGTCTCCAGCAGCAGCATGC
CTGCCACCATTAGTTACGGCCAATGTACTCTGCGACAGCATTTCTGGAGA
TCAAAGACATATGCAGTAGCTTTCGTTTCGCGAAGCAGCAGCACGAGTAG
ACGCCAGCGAGCCCTCGACTCAATTACCACGGAAGACAAGCTGGCCAAGG
ACAGCAAACGACGGCGAGAACGGGCCGACAGCGTCTCTGAAACTATGCTT
CAAGACCGGCGTCGGCACTTGGAACGCATCTCAGAGATGGCACAAGAGAC
AGAGAAGGGGGAGGCAGGGGAAGAAGTCACGGGCGGGGGGGAGCACATGG
ACTCTGTGATACTACGACGCATTCGGGCTTTGGGCCTGGGCCAAAAACAG
CGTGGAAAGGACACATCTCGATATCGACGTGGGCCAAAAGATGATGCGGC
AGATCCTTCAGAAATTGGGGCGACGGGGTTTGCGACTTACATGGCCGCAG
CGAGTGGGGGAGGAAGGGAGGGGTGGCCATTGTTTAAGCACATGTTGCCG
GAGGTGGCGTTTGCCGGGCATTCAAACTGTGGAAAATCGAGTTTGGTGAA
TGCCGTGGCGGGGATGGCGCCTCGTAGGGGGTTGGCACGGGTGTCGGATC
GGGCAGGATGGACGGATGCGGTTTTCTTTTATCAGTTGGGAAAGAAGCCG
CCCGTGTTAACATTGGCTGACCTACCGGGGTATGGGCATGCAGTGGCGTC
CATGCAGCAGAAGCGAAGATGGAGGGATATGACAAATGATTATTTCATGT
CGCGAAAGGTGCTAACTTTGTGTTGTGTGTTGGTGGATTGCGTGAGGGGG
CTATGCAAAGAGGATCAAGATTTACTGGAGTCCTTGAGAGCCAAGGGCGT
GCCAGTCAAAGTGATACTGACGAAGGGTGACTTATTAGACGAGGTAGACT
TGGCGCGTAGCCACGCATTGGTGGTGAGAGATTTGCAGGCAATGGGGTTG
TTTGATGAGGAAGGGGATGAGGGAGGGAGGGAGGGAGGGAGGGAGGATGT
ATTGATGGTGAGTTCGAGTACGGGAGCGGGCGTGTCGGTCTTGTGGAAAG
CATTGGTGGAGTGCACAAGGAATGATGTCGTCTTTAAGGGTGATATTGGT
TTGCATCGGGCATCGTTGCGGTAGACAAGATGGAGAAGGGATGCCGTTGC
GTCCGTAGGGAGGTTTACATGGTACGAGTGGGGTGACAGGCGATAAAAAA
AGCGAAACGGAAATAAGGCTCGTCTACCAGTTGGAGCGCAAAGTAGTGAT
GGTACGGGCCTAGCGGGGCGCTGCAAGGCC

protein sequence of jgi.p|Nanoce1779_2|274532

>mRNA_9182-protein ID=mRNA_9182-protein|Name=jgi.p|Nanoce1779_2|274532|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MPATISYGQCTLRQHFWRSKTYAVAFVSRSSSTSRRQRALDSITTEDKLA
KDSKRRRERADSVSETMLQDRRRHLERISEMAQETEKGEAGEEVTGGGEH
MDSVILRRIRALGLGQKQRGKDTSRYRRGPKDDAADPSEIGATGFATYMA
AASGGGREGWPLFKHMLPEVAFAGHSNCGKSSLVNAVAGMAPRRGLARVS
DRAGWTDAVFFYQLGKKPPVLTLADLPGYGHAVASMQQKRRWRDMTNDYF
MSRKVLTLCCVLVDCVRGLCKEDQDLLESLRAKGVPVKVILTKGDLLDEV
DLARSHALVVRDLQAMGLFDEEGDEGGREGGREDVLMVSSSTGAGVSVLW
KALVECTRNDVVFKGDIGLHRASLR*

mRNA from alignment at scaffold_36:156416..157901+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9182 ID=mRNA_9182|Name=jgi.p|Nanoce1779_2|274532|organism=Nannochloropsis oceanica|type=mRNA|length=1486bp|location=Sequence derived from alignment at scaffold_36:156416..157901+ (Nannochloropsis oceanica)
GACTATTTAAACCTCCGCGTCTATACCTGGCATGTTTGGGATCATGGTGG
TTTTGAATGAGAACAGTTAGTAAGTGTGATATGTTAGCGAGAGTGGCATG
AATATATTCCTGTCTTGACCTCCCCACCCCCCTGCCTCTTCTTACTCTTT
AACCATCCGCTCCATCATTGAACAGATTTATACACTGGTCTCCAGCAGCA
GCATGCCTGCCACCATTAGTTACGGCCAATGTACTCTGCGACAGCATTTC
TGGAGATCAAAGACATATGCAGTAGCTTTCGTTTCGCGAAGCAGCAGCAC
GAGTAGACGCCAGCGAGCCCTCGACTCAATTACCACGGAAGACAAGCTGG
CCAAGGACAGCAAACGACGGCGAGAACGGGCCGACAGCGTCTCTGAAACT
ATGCTTCAAGACCGGCGTCGGCACTTGGAACGCATCTCAGAGATGGCACA
AGAGACAGAGAAGGGGGAGGCAGGGGAAGAAGTCACGGGCGGGGGGGAGC
ACATGGACTCTGTGATACTACGACGCATTCGGGCTTTGGGCCTGGGCCAA
AAACAGCGTGGAAAGGACACATCTCGATATCGACGTGGGCCAAAAGATGA
TGCGGCAGATCCTTCAGAAATTGGGGCGACGGGGTTTGCGACTTACATGG
CCGCAGCGAGTGGGGGAGGAAGGGAGGGGTGGCCATTGTTTAAGCACATG
TTGCCGGAGGTGGCGTTTGCCGGGCATTCAAACTGTGGAAAATCGAGTTT
GGTGAATGCCGTGGCGGGGATGGCGCCTCGTAGGGGGTTGGCACGGGTGT
CGGATCGGGCAGGATGGACGGATGCGGTTTTCTTTTATCAGTTGGGAAAG
AAGCCGCCCGTGTTAACATTGGCTGACCTACCGGGGTATGGGCATGCAGT
GGCGTCCATGCAGCAGAAGCGAAGATGGAGGGATATGACAAATGATTATT
TCATGTCGCGAAAGGTGCTAACTTTGTGTTGTGTGTTGGTGGATTGCGTG
AGGGGGCTATGCAAAGAGGATCAAGATTTACTGGAGTCCTTGAGAGCCAA
GGGCGTGCCAGTCAAAGTGATACTGACGAAGGGTGACTTATTAGACGAGG
TAGACTTGGCGCGTAGCCACGCATTGGTGGTGAGAGATTTGCAGGCAATG
GGGTTGTTTGATGAGGAAGGGGATGAGGGAGGGAGGGAGGGAGGGAGGGA
GGATGTATTGATGGTGAGTTCGAGTACGGGAGCGGGCGTGTCGGTCTTGT
GGAAAGCATTGGTGGAGTGCACAAGGAATGATGTCGTCTTTAAGGGTGAT
ATTGGTTTGCATCGGGCATCGTTGCGGTAGACAAGATGGAGAAGGGATGC
CGTTGCGTCCGTAGGGAGGTTTACATGGTACGAGTGGGGTGACAGGCGAT
AAAAAAAGCGAAACGGAAATAAGGCTCGTCTACCAGTTGGAGCGCAAAGT
AGTGATGGTACGGGCCTAGCGGGGCGCTGCAAGGCC

Coding sequence (CDS) from alignment at scaffold_36:156416..157901+

>mRNA_9182 ID=mRNA_9182|Name=jgi.p|Nanoce1779_2|274532|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at scaffold_36:156416..157901+ (Nannochloropsis oceanica)
ATGCCTGCCACCATTAGTTACGGCCAATGTACTCTGCGACAGCATTTCTG
GAGATCAAAGACATATGCAGTAGCTTTCGTTTCGCGAAGCAGCAGCACGA
GTAGACGCCAGCGAGCCCTCGACTCAATTACCACGGAAGACAAGCTGGCC
AAGGACAGCAAACGACGGCGAGAACGGGCCGACAGCGTCTCTGAAACTAT
GCTTCAAGACCGGCGTCGGCACTTGGAACGCATCTCAGAGATGGCACAAG
AGACAGAGAAGGGGGAGGCAGGGGAAGAAGTCACGGGCGGGGGGGAGCAC
ATGGACTCTGTGATACTACGACGCATTCGGGCTTTGGGCCTGGGCCAAAA
ACAGCGTGGAAAGGACACATCTCGATATCGACGTGGGCCAAAAGATGATG
CGGCAGATCCTTCAGAAATTGGGGCGACGGGGTTTGCGACTTACATGGCC
GCAGCGAGTGGGGGAGGAAGGGAGGGGTGGCCATTGTTTAAGCACATGTT
GCCGGAGGTGGCGTTTGCCGGGCATTCAAACTGTGGAAAATCGAGTTTGG
TGAATGCCGTGGCGGGGATGGCGCCTCGTAGGGGGTTGGCACGGGTGTCG
GATCGGGCAGGATGGACGGATGCGGTTTTCTTTTATCAGTTGGGAAAGAA
GCCGCCCGTGTTAACATTGGCTGACCTACCGGGGTATGGGCATGCAGTGG
CGTCCATGCAGCAGAAGCGAAGATGGAGGGATATGACAAATGATTATTTC
ATGTCGCGAAAGGTGCTAACTTTGTGTTGTGTGTTGGTGGATTGCGTGAG
GGGGCTATGCAAAGAGGATCAAGATTTACTGGAGTCCTTGAGAGCCAAGG
GCGTGCCAGTCAAAGTGATACTGACGAAGGGTGACTTATTAGACGAGGTA
GACTTGGCGCGTAGCCACGCATTGGTGGTGAGAGATTTGCAGGCAATGGG
GTTGTTTGATGAGGAAGGGGATGAGGGAGGGAGGGAGGGAGGGAGGGAGG
ATGTATTGATGGTGAGTTCGAGTACGGGAGCGGGCGTGTCGGTCTTGTGG
AAAGCATTGGTGGAGTGCACAAGGAATGATGTCGTCTTTAAGGGTGATAT
TGGTTTGCATCGGGCATCGTTGCGGTAG

Synonyms

Publications