jgi.p|Nanoce1779_2|574647, mRNA_918 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574647
Unique Name	mRNA_918
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1488
Alignment location	scaffold_2:748585..750572 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574733
Track	FilteredModels2
ProteinId	574647

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:748585..750572 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574647	gene_918	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574647	mRNA_918-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_918	CDS_918	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:748585..750572+
coding sequence from alignment at scaffold_2:748585..750572+

mRNA sequence

>mRNA_918 ID=mRNA_918|Name=jgi.p|Nanoce1779_2|574647|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp
ACAGATTCGAGCCGTCTACGCGCCTAGGTAGCCATGCTGGTGCCCTGCCT
TTCACTGGACGGGGTGCTTGCCGATCCCGACCTGGCTAAGCGGTACGGCG
TATTGGGTACCCTCCTGCTTCAGCCATCCCAATCATCCGCTCTCCCGGCC
GTAATCCCTGTGGCGTTGCTACACCATCACAGCCTTGCGCTAGGACCCCT
GGCCCTCGCCCAAGTTGAAGAAGTGCGGCCATGGCTACATAGCGGTATCC
GCAAGGCCTTCTTCACCATACCCAAGGATATGCCAGTGAACAGGGTCAGA
GAAGAACTTGCCCCCCTCCCTCGCGATCGTGTGGGGGCCATCGTCGTCGT
GGACGCCAAGGAGGGTGCCAGAGCATACTTGGCGGAGCGCGTGACACAGT
TGTGCGCGGATGCGTCGACAATTATCTTGCAAATTGAAGAAGGTGTTGTA
GATGGGGAGGAGTCACTTGTCGAAATGGTCAAGTCAGTGCGCCAGGCCAC
CAAGCCAAGTGCCTTGTTTTGGGGGATGATGGTTAAAGCACCTGCATCCA
TGACATGGTCGGCAACAAGCATCAGCGCTCTACACAAAATGGAAATACAG
GCACTTATTCCCGCTACCACTGTGGCCGGAAACAAGATCAGCACCACGAC
TACAACCAATACGGGCCCCACCGATCTACTTAATCCGTTGCTTCCCTTGG
GCCAGTCGTTGGTTGATGGCGTAGACGCCTTCTTGGCATGCCTACGCACC
GATCGTTCCGATGGACTTTTTACTACAGTGGTGGTGGACGAAAGCAACAT
GGCACTGGGCTTGGTGTATTCGAGCGGGGAAAGCGTGCGGGCGTCGGTAG
CGGAGCAGCGTGGCATTTACTACTCCCGGTCTCGGTCCAGCCTTTGGCGG
AAAGGAGACTCGAGTGGAGCTGTGCAGGAGTTGGTCAGTCTGGATATGGA
CTGCGACTCTGACGCTTTGCGCTTTGTTGTGCGGCAACGTGGCGACCCCC
CGGCCTTTTGTCACTTGAATCGACGCAATTGTTGGCAACGAGATCGAGGC
CTTACCGCCTTGCAACGAACCTTGGAGGAACGCTTGAAGAAAGCGACCGA
GGGTTCTTATACTCGTAGACTCTTTCAGGATCCAGAGCTGCTGCGACACA
AGCTGGTTGAAGAAGCACAGGAGCTTAGTGAGGCTGTGGAACCTGACGAC
GTGGCGGCAGAGGCAGCGGACGTGTTTTACTTTGCGTTGGTGCGGTGCGT
GGCGGCGGGTGTTGGTTTAGAGGACGTCGAGCGGCACCTTGACGCCCGGA
TGCTCAAGCTAGCGAGACGACCAGGCAATGCTAAGGCCTACCGGATCGAG
GCAGCTAAGGCTATTTTGGCTAATGAAAGTCCGCCATCGGCCTCCCCGTC
GTGATCTCGTGATCTTGAGGCGGAGATGTCATCGATACATAGAGAACAGA
GAGAGAGAGTAGAACATCAACCTTAAAAGAGAAGAAAT

protein sequence of jgi.p|Nanoce1779_2|574647

>mRNA_918-protein ID=mRNA_918-protein|Name=jgi.p|Nanoce1779_2|574647|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MLVPCLSLDGVLADPDLAKRYGVLGTLLLQPSQSSALPAVIPVALLHHHS
LALGPLALAQVEEVRPWLHSGIRKAFFTIPKDMPVNRVREELAPLPRDRV
GAIVVVDAKEGARAYLAERVTQLCADASTIILQIEEGVVDGEESLVEMVK
SVRQATKPSALFWGMMVKAPASMTWSATSISALHKMEIQALIPATTVAGN
KISTTTTTNTGPTDLLNPLLPLGQSLVDGVDAFLACLRTDRSDGLFTTVV
VDESNMALGLVYSSGESVRASVAEQRGIYYSRSRSSLWRKGDSSGAVQEL
VSLDMDCDSDALRFVVRQRGDPPAFCHLNRRNCWQRDRGLTALQRTLEER
LKKATEGSYTRRLFQDPELLRHKLVEEAQELSEAVEPDDVAAEAADVFYF
ALVRCVAAGVGLEDVERHLDARMLKLARRPGNAKAYRIEAAKAILANESP
PSASPS*

mRNA from alignment at scaffold_2:748585..750572+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_918 ID=mRNA_918|Name=jgi.p|Nanoce1779_2|574647|organism=Nannochloropsis oceanica|type=mRNA|length=1988bp|location=Sequence derived from alignment at scaffold_2:748585..750572+ (Nannochloropsis oceanica)
ACAGATTCGAGCCGTCTACGCGCCTAGGTAGCCATGCTGGTGCCCTGCCT
TTCACTGGACGGGGTGCTTGCCGATCCCGACCTGGCTAAGCGGTACGGCG
TATTGGGTACCCTCCTGCTTCAGCCATCCCAATCATCCGCTCTCCCGGCC
GTGTAAGTCAGCTAATCTTCCCCTCATGTATGCATCTTATTGCGACGGTC
CGAATGTGTCTTCAATAGCGGACGCGGCTTCCTTTCCAAGTACACAAGTT
GCGATCTCCCTTCCGCCCTCCCTTTCATGTCCCAACACAAACCATCACCT
CAACTGAGCCTCACACTCACACGAGTCATTTCTTTTTTCTTTTCTTTAAC
TTCACTCACGTATCAATCCATGCGTCGCCAATCCTTTTTTCCTTTTACTC
CATTCTCGGCCTCTGCTTTCCCATTGCGCTAACCCTCCCGACAGAATCCC
TGTGGCGTTGCTACACCATCACAGCCTTGCGCTAGGACCCCTGGCCCTCG
CCCAAGTTGAAGAAGTGCGGCCATGGCTACATAGCGGTATCCGCAAGGCC
TTCTTCACCATACCCAAGGATATGCCAGTGAACAGGGTCAGAGAAGAACT
TGCCCCCCTCCCTCGCGATCGTGTGGGGGCCATCGTCGTCGTGGACGCCA
AGGAGGGTGCCAGAGCATACTTGGCGGAGCGCGTGACACAGTTGTGCGCG
GATGCGTCGACAATTATCTTGCAAATTGAAGAAGGTGTTGTAGATGGGGA
GGAGTCACTTGTCGAAATGGTCAAGTCAGTGCGCCAGGCCACCAAGCCAA
GTGCCTTGTTTTGGGGGATGATGGTTAAAGCACCTGCATCCATGACATGG
TCGGCAACAAGCATCAGCGCTCTACACAAAATGGAAATACAGGCACTTAT
TCCCGCTACCACTGTGGCCGGAAACAAGATCAGCACCACGACTACAACCA
ATACGGGCCCCACCGATCTACTTAATCCGTTGCTTCCCTTGGGCCAGTCG
TTGGTTGATGGCGTAGACGCCTTCTTGGCATGCCTACGCACCGATCGTTC
CGATGGACTTTTTACTACAGTGGTGGTGGACGAAAGCAACATGGCACTGG
GCTTGGTGTATTCGAGCGGGGAAAGCGTGCGGGCGTCGGTAGCGGAGCAG
CGTGGCATTTACTACTCCCGGTCTCGGTCCAGCCTTTGGCGGAAAGGAGA
CTCGAGTGGAGCTGTGCAGGAGTTGGTCAGTCTGGATATGGACTGCGACT
CTGACGCTTTGCGCTTTGTTGTGCGGCAACGTGGCGACCCCCCGGTGAGT
GGCCAGGTGGTGTTAGGGGAGGGCATGGTTAGCTATGTATGATGTGGTGT
GCGGCCGTTTGAGAAATAATCATTAGGGGGAAAGACAGCACACACCGGCT
TGTATGATTTCAAAGAAATCAAGATCACCTTCGCTACAGGCACCATGTAA
TGTACGGTCAACTAATTCAATCTATACCTGGCGCTCTACCATCGCAACAT
AGGCCTTTTGTCACTTGAATCGACGCAATTGTTGGCAACGAGATCGAGGC
CTTACCGCCTTGCAACGAACCTTGGAGGAACGCTTGAAGAAAGCGACCGA
GGGTTCTTATACTCGTAGACTCTTTCAGGATCCAGAGCTGCTGCGACACA
AGCTGGTTGAAGAAGCACAGGAGCTTAGTGAGGCTGTGGAACCTGACGAC
GTGGCGGCAGAGGCAGCGGACGTGTTTTACTTTGCGTTGGTGCGGTGCGT
GGCGGCGGGTGTTGGTTTAGAGGACGTCGAGCGGCACCTTGACGCCCGGA
TGCTCAAGCTAGCGAGACGACCAGGCAATGCTAAGGCCTACCGGATCGAG
GCAGCTAAGGCTATTTTGGCTAATGAAAGTCCGCCATCGGCCTCCCCGTC
GTGATCTCGTGATCTTGAGGCGGAGATGTCATCGATACATAGAGAACAGA
GAGAGAGAGTAGAACATCAACCTTAAAAGAGAAGAAAT

Coding sequence (CDS) from alignment at scaffold_2:748585..750572+

>mRNA_918 ID=mRNA_918|Name=jgi.p|Nanoce1779_2|574647|organism=Nannochloropsis oceanica|type=CDS|length=4113bp|location=Sequence derived from alignment at scaffold_2:748585..750572+ (Nannochloropsis oceanica)
ATGCTGGTGCCCTGCCTTTCACTGGACGGGGTGCTTGCCGATCCCGACCT
GGCTAAGCGGTACGGCGTATTGGGTACCCTCCTGCTTCAGCCATCCCAAT
CATCCGCTCTCCCGGCCGTAATCCCTGTGGCGTTGCTACACCATCACAGC
CTTGCGCTAGGACCCCTGGCCCTCGCCCAAGTTGAAGAAGTGCGGCCATG
GCTACATAGCGGTATCCGCAAGGCCTTCTTCACCATACCCAAGGATATGC
CAGTGAACAGGGTCAGAGAAGAACTTGCCCCCCTCCCTCGCGATCGTGTG
GGGGCCATCGTCGTCGTGGACGCCAAGGAGGGTGCCAGAGCATACTTGGC
GGAGCGCGTGACACAGTTGTGCGCGGATGCGTCGACAATTATCTTGCAAA
TTGAAGAAGGTGTTGTAGATGGGGAGGAGTCACTTGTCGAAATGGTCAAG
TCAGTGCGCCAGGCCACCAAGCCAAGTGCCTTGTTTTGGGGGATGATGGT
TAAAGCACCTGCATCCATGACATGGTCGGCAACAAGCATCAGCGCTCTAC
ACAAAATGGAAATACAGGCACTTATTCCCGCTACCACTGTGGCCGGAAAC
AAGATCAGCACCACGACTACAACCAATACGGGCCCCACCGATCTACTTAA
TCCGTTGCTTCCCTTGGGCCAGTCGTTGGTTGATGGCGTAGACGCCTTCT
TGGCATGCCTACGCACCGATCGTTCCGATGGACTTTTTACTACAGTGGTG
GTGGACGAAAGCAACATGGCACTGGGCTTGGTGTATTCGAGCGGGGAAAG
CGTGCGGGCGTCGGTAGCGGAGCAGCGTGGCATTTACTACTCCCGGTCTC
GGTCCAGCCTTTGGCGGAAAGGAGACTCGAGTGGAGCTGTGCAGGAGTTG
GTCAGTCTGGATATGGACTGCGACTCTGACGCTTTGCGCTTTGTTGTGCG
GCAACGTGGCGACCCCCCGGCCTTTTGTCACTTGAATCGACGCAATTGTT
GGCAACGAGATCGAGGCCTTACCGCCTTGCAACGAACCTTGGAGGAACGC
TTGAAGAAAGCGACCGAGGGTTCTTATACTCGTAGACTCTTTCAGGATCC
AGAGCTGCTGCGACACAAGCTGGTTGAAGAAGCACAGGAGCTTAGTGAGG
CTGTGGAACCTGACGACGTGGCGGCAGAGGCAGCGGACGTGTTTTACTTT
GCGTTGGTGCGGTGCGTGGCGGCGGGTGTTGGTTTAGAGGACGTCGAGCG
GCACCTTGACGCCCGGATGCTCAAGCTAGCGAGACGACCAGGCAATGCTA
AGGCCTACCGGATCGAGGCAGCTAAGGCTATTTTGGCTAATGAAAGTCCG
CCATCGGCCTCCCCGTCGTGAATGCTGGTGCCCTGCCTTTCACTGGACGG
GGTGCTTGCCGATCCCGACCTGGCTAAGCGGTACGGCGTATTGGGTACCC
TCCTGCTTCAGCCATCCCAATCATCCGCTCTCCCGGCCGTAATCCCTGTG
GCGTTGCTACACCATCACAGCCTTGCGCTAGGACCCCTGGCCCTCGCCCA
AGTTGAAGAAGTGCGGCCATGGCTACATAGCGGTATCCGCAAGGCCTTCT
TCACCATACCCAAGGATATGCCAGTGAACAGGGTCAGAGAAGAACTTGCC
CCCCTCCCTCGCGATCGTGTGGGGGCCATCGTCGTCGTGGACGCCAAGGA
GGGTGCCAGAGCATACTTGGCGGAGCGCGTGACACAGTTGTGCGCGGATG
CGTCGACAATTATCTTGCAAATTGAAGAAGGTGTTGTAGATGGGGAGGAG
TCACTTGTCGAAATGGTCAAGTCAGTGCGCCAGGCCACCAAGCCAAGTGC
CTTGTTTTGGGGGATGATGGTTAAAGCACCTGCATCCATGACATGGTCGG
CAACAAGCATCAGCGCTCTACACAAAATGGAAATACAGGCACTTATTCCC
GCTACCACTGTGGCCGGAAACAAGATCAGCACCACGACTACAACCAATAC
GGGCCCCACCGATCTACTTAATCCGTTGCTTCCCTTGGGCCAGTCGTTGG
TTGATGGCGTAGACGCCTTCTTGGCATGCCTACGCACCGATCGTTCCGAT
GGACTTTTTACTACAGTGGTGGTGGACGAAAGCAACATGGCACTGGGCTT
GGTGTATTCGAGCGGGGAAAGCGTGCGGGCGTCGGTAGCGGAGCAGCGTG
GCATTTACTACTCCCGGTCTCGGTCCAGCCTTTGGCGGAAAGGAGACTCG
AGTGGAGCTGTGCAGGAGTTGGTCAGTCTGGATATGGACTGCGACTCTGA
CGCTTTGCGCTTTGTTGTGCGGCAACGTGGCGACCCCCCGGCCTTTTGTC
ACTTGAATCGACGCAATTGTTGGCAACGAGATCGAGGCCTTACCGCCTTG
CAACGAACCTTGGAGGAACGCTTGAAGAAAGCGACCGAGGGTTCTTATAC
TCGTAGACTCTTTCAGGATCCAGAGCTGCTGCGACACAAGCTGGTTGAAG
AAGCACAGGAGCTTAGTGAGGCTGTGGAACCTGACGACGTGGCGGCAGAG
GCAGCGGACGTGTTTTACTTTGCGTTGGTGCGGTGCGTGGCGGCGGGTGT
TGGTTTAGAGGACGTCGAGCGGCACCTTGACGCCCGGATGCTCAAGCTAG
CGAGACGACCAGGCAATGCTAAGGCCTACCGGATCGAGGCAGCTAAGGCT
ATTTTGGCTAATGAAAGTCCGCCATCGGCCTCCCCGTCGTGAATGCTGGT
GCCCTGCCTTTCACTGGACGGGGTGCTTGCCGATCCCGACCTGGCTAAGC
GGTACGGCGTATTGGGTACCCTCCTGCTTCAGCCATCCCAATCATCCGCT
CTCCCGGCCGTAATCCCTGTGGCGTTGCTACACCATCACAGCCTTGCGCT
AGGACCCCTGGCCCTCGCCCAAGTTGAAGAAGTGCGGCCATGGCTACATA
GCGGTATCCGCAAGGCCTTCTTCACCATACCCAAGGATATGCCAGTGAAC
AGGGTCAGAGAAGAACTTGCCCCCCTCCCTCGCGATCGTGTGGGGGCCAT
CGTCGTCGTGGACGCCAAGGAGGGTGCCAGAGCATACTTGGCGGAGCGCG
TGACACAGTTGTGCGCGGATGCGTCGACAATTATCTTGCAAATTGAAGAA
GGTGTTGTAGATGGGGAGGAGTCACTTGTCGAAATGGTCAAGTCAGTGCG
CCAGGCCACCAAGCCAAGTGCCTTGTTTTGGGGGATGATGGTTAAAGCAC
CTGCATCCATGACATGGTCGGCAACAAGCATCAGCGCTCTACACAAAATG
GAAATACAGGCACTTATTCCCGCTACCACTGTGGCCGGAAACAAGATCAG
CACCACGACTACAACCAATACGGGCCCCACCGATCTACTTAATCCGTTGC
TTCCCTTGGGCCAGTCGTTGGTTGATGGCGTAGACGCCTTCTTGGCATGC
CTACGCACCGATCGTTCCGATGGACTTTTTACTACAGTGGTGGTGGACGA
AAGCAACATGGCACTGGGCTTGGTGTATTCGAGCGGGGAAAGCGTGCGGG
CGTCGGTAGCGGAGCAGCGTGGCATTTACTACTCCCGGTCTCGGTCCAGC
CTTTGGCGGAAAGGAGACTCGAGTGGAGCTGTGCAGGAGTTGGTCAGTCT
GGATATGGACTGCGACTCTGACGCTTTGCGCTTTGTTGTGCGGCAACGTG
GCGACCCCCCGGCCTTTTGTCACTTGAATCGACGCAATTGTTGGCAACGA
GATCGAGGCCTTACCGCCTTGCAACGAACCTTGGAGGAACGCTTGAAGAA
AGCGACCGAGGGTTCTTATACTCGTAGACTCTTTCAGGATCCAGAGCTGC
TGCGACACAAGCTGGTTGAAGAAGCACAGGAGCTTAGTGAGGCTGTGGAA
CCTGACGACGTGGCGGCAGAGGCAGCGGACGTGTTTTACTTTGCGTTGGT
GCGGTGCGTGGCGGCGGGTGTTGGTTTAGAGGACGTCGAGCGGCACCTTG
ACGCCCGGATGCTCAAGCTAGCGAGACGACCAGGCAATGCTAAGGCCTAC
CGGATCGAGGCAGCTAAGGCTATTTTGGCTAATGAAAGTCCGCCATCGGC
CTCCCCGTCGTGA

Synonyms

Publications