jgi.p|Nanoce1779_2|606770, mRNA_9179 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606770
Unique Name	mRNA_9179
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2070
Alignment location	scaffold_36:146493..148562 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606856
Track	FilteredModels2
ProteinId	606770

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:146493..148562 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606770	gene_9179	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606770	mRNA_9179-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9179	CDS_9179	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:146493..148562+
coding sequence from alignment at scaffold_36:146493..148562+

mRNA sequence

>mRNA_9179 ID=mRNA_9179|Name=jgi.p|Nanoce1779_2|606770|organism=Nannochloropsis oceanica|type=mRNA|length=2070bp
ACAGCCTCCAATCGCCCAACAGCAGGTCACTGGTGTAGGCTGGAGCGAGG
CGAGGCAGCACGTCGGCTCTGTCCACCGTCCTCCACTCGGCTTGACCCAA
TCAAAACCCCAAGGATCTGGTGAAGAATCATCATCCACTGCCTGCCTACT
GCCTTCATCATGAACGCCATCTTGTCCCCTCGCTTGCGCCTGACCCAGCT
GCTGCTGCGCCAAAGCAACAGCACGCTGGTGCGGCAGCAGCAGTCGTTCT
CATCCAAGATCAAGGCCGTGGCGGACCGGCCGAGCGTAGTGACACTCAAG
AATGCCTTCCGTGTGCGCCTGGAGGAGGAACGGGCCAAGGCCTTGCAAGG
CGGGGGAGAGAAACGTGTGGCCAAGCAGCATGCCAAGGGCAAGCTTACGG
CACGGGAGCGGCTATCATTGCTGCTGGATGAGGGCTCGTTTCGGGAGTCT
GACATGCTCAAGACGCATCGATGCACGGACTTTGGGATGCAAGACGAGAT
GTACCCGGGGGATGGCGTGGTAACGGGCTGGGGAACCGTGAATGGGCGCC
CTGTCTATGTGTTTAGTCAGGATTTCACCGTATTTGGTGGATCATTGTCT
GAAACGCACGCGCAGAAGATTTGCAAGATTATGGACAAGGCAGTGCAGTC
GGGCGTGCCTGTCATTGGGCTAAACGACTCGGGGGGTGCGCGCATCCAGG
AAGGGGTCGATTCGCTGGGTGGGTACGCCGAGGTGTTTCAGCGCAATGTG
AATGCGTCAGGAGTAGTGCCTCAGATCAGCTTGGTCATGGGTCCATGTGC
GGGGGGTGCGGTGTACTCGCCGGCGATGACCGATTTTATTTTCATGGTGC
GTCGGACTTCGTACATGTTTGTGACAGGGCCGGATGTCGTCAGGACCGTG
ACACAGGAGGAGATCTCGCAAGAGGAGCTGGGGGGCGCAGAGACACACAC
CACCATGTCGGGCGTGGCCCACTGCGCATTTGACAATGACATTGAGGCTC
TGCGGGCTACGAGGCTGTTGCTCGATTTCCTTCCGCTAAATTCACGCGAG
AAGCCCCCAGCCGTGCACACTGAAGACTCGCGCCATCGTCAAGAGCCCTG
CCTGCGCTATTTGTGCCCAGATGACCCCAATCATCCGTATGATATGGCGG
AAGTTGTAAAGAAGGTGGTGGATGAAGGAAATTTTTTCGAGATTATGCCC
GGTTTCGCCAAGAACATTGTCACGGGTTTCGCACGCTTGGAGGGCCACCC
GGTCGCCATCGTCGCAAACAACCCGGCGCATCTGGCTGGATGTTTGGACA
TAAATTCGTCGGTGAAAGCGGGAAGGTTTGTGCGGTTCGCCGATGCGTTT
AATATCCCGATCGTGACTTTCGTGGATGTCCCGGGGTTTTTGCCGGGGGT
GGATCAGGAGCACAACGGCATCATCCGAAACGGCGCGAAGCTGCTCTTTG
CCTACGCTGAAGCAACTGTGCCGAAGGTTACGGTGATCACGCGTAAGGCC
TACGGGGGGGCTTATGACGTCATGTCGAGTAAGCATCTGAGGGGCGACGC
GAACTTTGCATGGCCGGGGGCCGAGATCGCTGTTATGGGCGCTAAGGGCG
CCGTGGGCATAATCTTCAGGGGCAAGGATGTGGAGGCCAACACATTGAAG
TACACAGACAGGTTTGCGAACCCGATGGTGGCGGCTCAGAGGGGATATAT
TGATGAGGTGATTGACCCGGCCTGCACGAGGCAGCATCTCTGCAAGGAAT
TGGAAATCCTGCGAAATAAGAAGGTGGAAAACCCGCACCGGAAGCACAGC
AATGTGCCTTTATAATCATCGAGGAGGGGAGCAGAGGAACTAAGGAAGGG
AGGGTGTAAGAAAATGGGGGCAGAGACGCAGAAAGGGAGGAGGGAATAGG
AGTATGTTCATTGTTTTGAACGGTAACGGCAGGTGCGGAGAAAAGGAGAA
ATGGAAAATTGTGGGCCCGGCGAGAACACGTTCGAGATCGAGGGTGAAGA
CAAACAAGAAAAGGAAAATGAATGTAACAAAGAAGAGCGGAAAGAAAAGA
AGATCAAAACCCTTGTCTAC

protein sequence of jgi.p|Nanoce1779_2|606770

>mRNA_9179-protein ID=mRNA_9179-protein|Name=jgi.p|Nanoce1779_2|606770|organism=Nannochloropsis oceanica|type=polypeptide|length=552bp
MNAILSPRLRLTQLLLRQSNSTLVRQQQSFSSKIKAVADRPSVVTLKNAF
RVRLEEERAKALQGGGEKRVAKQHAKGKLTARERLSLLLDEGSFRESDML
KTHRCTDFGMQDEMYPGDGVVTGWGTVNGRPVYVFSQDFTVFGGSLSETH
AQKICKIMDKAVQSGVPVIGLNDSGGARIQEGVDSLGGYAEVFQRNVNAS
GVVPQISLVMGPCAGGAVYSPAMTDFIFMVRRTSYMFVTGPDVVRTVTQE
EISQEELGGAETHTTMSGVAHCAFDNDIEALRATRLLLDFLPLNSREKPP
AVHTEDSRHRQEPCLRYLCPDDPNHPYDMAEVVKKVVDEGNFFEIMPGFA
KNIVTGFARLEGHPVAIVANNPAHLAGCLDINSSVKAGRFVRFADAFNIP
IVTFVDVPGFLPGVDQEHNGIIRNGAKLLFAYAEATVPKVTVITRKAYGG
AYDVMSSKHLRGDANFAWPGAEIAVMGAKGAVGIIFRGKDVEANTLKYTD
RFANPMVAAQRGYIDEVIDPACTRQHLCKELEILRNKKVENPHRKHSNVP
L*

mRNA from alignment at scaffold_36:146493..148562+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9179 ID=mRNA_9179|Name=jgi.p|Nanoce1779_2|606770|organism=Nannochloropsis oceanica|type=mRNA|length=2070bp|location=Sequence derived from alignment at scaffold_36:146493..148562+ (Nannochloropsis oceanica)
ACAGCCTCCAATCGCCCAACAGCAGGTCACTGGTGTAGGCTGGAGCGAGG
CGAGGCAGCACGTCGGCTCTGTCCACCGTCCTCCACTCGGCTTGACCCAA
TCAAAACCCCAAGGATCTGGTGAAGAATCATCATCCACTGCCTGCCTACT
GCCTTCATCATGAACGCCATCTTGTCCCCTCGCTTGCGCCTGACCCAGCT
GCTGCTGCGCCAAAGCAACAGCACGCTGGTGCGGCAGCAGCAGTCGTTCT
CATCCAAGATCAAGGCCGTGGCGGACCGGCCGAGCGTAGTGACACTCAAG
AATGCCTTCCGTGTGCGCCTGGAGGAGGAACGGGCCAAGGCCTTGCAAGG
CGGGGGAGAGAAACGTGTGGCCAAGCAGCATGCCAAGGGCAAGCTTACGG
CACGGGAGCGGCTATCATTGCTGCTGGATGAGGGCTCGTTTCGGGAGTCT
GACATGCTCAAGACGCATCGATGCACGGACTTTGGGATGCAAGACGAGAT
GTACCCGGGGGATGGCGTGGTAACGGGCTGGGGAACCGTGAATGGGCGCC
CTGTCTATGTGTTTAGTCAGGATTTCACCGTATTTGGTGGATCATTGTCT
GAAACGCACGCGCAGAAGATTTGCAAGATTATGGACAAGGCAGTGCAGTC
GGGCGTGCCTGTCATTGGGCTAAACGACTCGGGGGGTGCGCGCATCCAGG
AAGGGGTCGATTCGCTGGGTGGGTACGCCGAGGTGTTTCAGCGCAATGTG
AATGCGTCAGGAGTAGTGCCTCAGATCAGCTTGGTCATGGGTCCATGTGC
GGGGGGTGCGGTGTACTCGCCGGCGATGACCGATTTTATTTTCATGGTGC
GTCGGACTTCGTACATGTTTGTGACAGGGCCGGATGTCGTCAGGACCGTG
ACACAGGAGGAGATCTCGCAAGAGGAGCTGGGGGGCGCAGAGACACACAC
CACCATGTCGGGCGTGGCCCACTGCGCATTTGACAATGACATTGAGGCTC
TGCGGGCTACGAGGCTGTTGCTCGATTTCCTTCCGCTAAATTCACGCGAG
AAGCCCCCAGCCGTGCACACTGAAGACTCGCGCCATCGTCAAGAGCCCTG
CCTGCGCTATTTGTGCCCAGATGACCCCAATCATCCGTATGATATGGCGG
AAGTTGTAAAGAAGGTGGTGGATGAAGGAAATTTTTTCGAGATTATGCCC
GGTTTCGCCAAGAACATTGTCACGGGTTTCGCACGCTTGGAGGGCCACCC
GGTCGCCATCGTCGCAAACAACCCGGCGCATCTGGCTGGATGTTTGGACA
TAAATTCGTCGGTGAAAGCGGGAAGGTTTGTGCGGTTCGCCGATGCGTTT
AATATCCCGATCGTGACTTTCGTGGATGTCCCGGGGTTTTTGCCGGGGGT
GGATCAGGAGCACAACGGCATCATCCGAAACGGCGCGAAGCTGCTCTTTG
CCTACGCTGAAGCAACTGTGCCGAAGGTTACGGTGATCACGCGTAAGGCC
TACGGGGGGGCTTATGACGTCATGTCGAGTAAGCATCTGAGGGGCGACGC
GAACTTTGCATGGCCGGGGGCCGAGATCGCTGTTATGGGCGCTAAGGGCG
CCGTGGGCATAATCTTCAGGGGCAAGGATGTGGAGGCCAACACATTGAAG
TACACAGACAGGTTTGCGAACCCGATGGTGGCGGCTCAGAGGGGATATAT
TGATGAGGTGATTGACCCGGCCTGCACGAGGCAGCATCTCTGCAAGGAAT
TGGAAATCCTGCGAAATAAGAAGGTGGAAAACCCGCACCGGAAGCACAGC
AATGTGCCTTTATAATCATCGAGGAGGGGAGCAGAGGAACTAAGGAAGGG
AGGGTGTAAGAAAATGGGGGCAGAGACGCAGAAAGGGAGGAGGGAATAGG
AGTATGTTCATTGTTTTGAACGGTAACGGCAGGTGCGGAGAAAAGGAGAA
ATGGAAAATTGTGGGCCCGGCGAGAACACGTTCGAGATCGAGGGTGAAGA
CAAACAAGAAAAGGAAAATGAATGTAACAAAGAAGAGCGGAAAGAAAAGA
AGATCAAAACCCTTGTCTAC

Coding sequence (CDS) from alignment at scaffold_36:146493..148562+

>mRNA_9179 ID=mRNA_9179|Name=jgi.p|Nanoce1779_2|606770|organism=Nannochloropsis oceanica|type=CDS|length=1656bp|location=Sequence derived from alignment at scaffold_36:146493..148562+ (Nannochloropsis oceanica)
ATGAACGCCATCTTGTCCCCTCGCTTGCGCCTGACCCAGCTGCTGCTGCG
CCAAAGCAACAGCACGCTGGTGCGGCAGCAGCAGTCGTTCTCATCCAAGA
TCAAGGCCGTGGCGGACCGGCCGAGCGTAGTGACACTCAAGAATGCCTTC
CGTGTGCGCCTGGAGGAGGAACGGGCCAAGGCCTTGCAAGGCGGGGGAGA
GAAACGTGTGGCCAAGCAGCATGCCAAGGGCAAGCTTACGGCACGGGAGC
GGCTATCATTGCTGCTGGATGAGGGCTCGTTTCGGGAGTCTGACATGCTC
AAGACGCATCGATGCACGGACTTTGGGATGCAAGACGAGATGTACCCGGG
GGATGGCGTGGTAACGGGCTGGGGAACCGTGAATGGGCGCCCTGTCTATG
TGTTTAGTCAGGATTTCACCGTATTTGGTGGATCATTGTCTGAAACGCAC
GCGCAGAAGATTTGCAAGATTATGGACAAGGCAGTGCAGTCGGGCGTGCC
TGTCATTGGGCTAAACGACTCGGGGGGTGCGCGCATCCAGGAAGGGGTCG
ATTCGCTGGGTGGGTACGCCGAGGTGTTTCAGCGCAATGTGAATGCGTCA
GGAGTAGTGCCTCAGATCAGCTTGGTCATGGGTCCATGTGCGGGGGGTGC
GGTGTACTCGCCGGCGATGACCGATTTTATTTTCATGGTGCGTCGGACTT
CGTACATGTTTGTGACAGGGCCGGATGTCGTCAGGACCGTGACACAGGAG
GAGATCTCGCAAGAGGAGCTGGGGGGCGCAGAGACACACACCACCATGTC
GGGCGTGGCCCACTGCGCATTTGACAATGACATTGAGGCTCTGCGGGCTA
CGAGGCTGTTGCTCGATTTCCTTCCGCTAAATTCACGCGAGAAGCCCCCA
GCCGTGCACACTGAAGACTCGCGCCATCGTCAAGAGCCCTGCCTGCGCTA
TTTGTGCCCAGATGACCCCAATCATCCGTATGATATGGCGGAAGTTGTAA
AGAAGGTGGTGGATGAAGGAAATTTTTTCGAGATTATGCCCGGTTTCGCC
AAGAACATTGTCACGGGTTTCGCACGCTTGGAGGGCCACCCGGTCGCCAT
CGTCGCAAACAACCCGGCGCATCTGGCTGGATGTTTGGACATAAATTCGT
CGGTGAAAGCGGGAAGGTTTGTGCGGTTCGCCGATGCGTTTAATATCCCG
ATCGTGACTTTCGTGGATGTCCCGGGGTTTTTGCCGGGGGTGGATCAGGA
GCACAACGGCATCATCCGAAACGGCGCGAAGCTGCTCTTTGCCTACGCTG
AAGCAACTGTGCCGAAGGTTACGGTGATCACGCGTAAGGCCTACGGGGGG
GCTTATGACGTCATGTCGAGTAAGCATCTGAGGGGCGACGCGAACTTTGC
ATGGCCGGGGGCCGAGATCGCTGTTATGGGCGCTAAGGGCGCCGTGGGCA
TAATCTTCAGGGGCAAGGATGTGGAGGCCAACACATTGAAGTACACAGAC
AGGTTTGCGAACCCGATGGTGGCGGCTCAGAGGGGATATATTGATGAGGT
GATTGACCCGGCCTGCACGAGGCAGCATCTCTGCAAGGAATTGGAAATCC
TGCGAAATAAGAAGGTGGAAAACCCGCACCGGAAGCACAGCAATGTGCCT
TTATAA

Synonyms

Publications