jgi.p|Nanoce1779_2|606761, mRNA_9176 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606761
Unique NamemRNA_9176
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length734
Alignment locationscaffold_36:140338..141071 -

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Properties
Property NameValue
TranscriptId606847
TrackFilteredModels2
ProteinId606761
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:140338..141071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606761gene_9176Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606761mRNA_9176-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9176CDS_9176Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9176 ID=mRNA_9176|Name=jgi.p|Nanoce1779_2|606761|organism=Nannochloropsis oceanica|type=mRNA|length=734bp
ACAGACATCTTTTCTGTTATGCATGCCTCCTGCACCTCGACACTGCTTTT
TCTGCTCTTGGGCTGTACTGCGATTATCTTGACTGGGGCCTACCTCCGCC
GTGCATCAATGGGCACCGATAGAGGCGTGGCGGTGGGAGAAAATTCCACG
TCACTGGTGGCGCTGCGTGCTTCCACAGCCTTCGGCTCTCGGTCAGCTTC
GCGCTCAGGTGTCTCTTTCACTATATCCGCACAAGAAAGAGATAGCCGTG
GCCTGACGGGTGCCCTTGACAATCATGCCGGCTCCGTGAAAGGTAGCATG
CCGCAGAAACATGGACAGCCAAACCTCGCCATCGGCACACCGCCGCTCCA
AACTCTTCAGGGACAGGCGCTTGGGCCTGCGGAACTGCCAGCAACTATGC
CTTTTGCATCTCCTTACGTGGGGACCCCGTAGGACGCATGGAGAAGAGAC
ATATCCACTTTTCAATGAAAGTGAAATGTCTTTATGCTTTATGGCAGCGC
GGGAGAAGTTATCAAGCGAAAAAGATGGTGCGCAGGTTGGCGGACAGAAA
CCACCAGAGGGATAAAAGGAAGGAAGAGACACCGCACGTGCCAAAGTGAG
ACTTAGAATAGCAACTTTATTCTTTCCGAGTCGTTATTCATTCAAATTTT
ATATTTGAAATAGTGACTTATGGAAGGGTGCGGAAAACAAAAAAAAATTG
GACAGATGGGAGCAAGAAAAGAATTGAAAACGAC
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protein sequence of jgi.p|Nanoce1779_2|606761

>mRNA_9176-protein ID=mRNA_9176-protein|Name=jgi.p|Nanoce1779_2|606761|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MHASCTSTLLFLLLGCTAIILTGAYLRRASMGTDRGVAVGENSTSLVALR
ASTAFGSRSASRSGVSFTISAQERDSRGLTGALDNHAGSVKGSMPQKHGQ
PNLAIGTPPLQTLQGQALGPAELPATMPFASPYVGTP*
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mRNA from alignment at scaffold_36:140338..141071-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9176 ID=mRNA_9176|Name=jgi.p|Nanoce1779_2|606761|organism=Nannochloropsis oceanica|type=mRNA|length=734bp|location=Sequence derived from alignment at scaffold_36:140338..141071- (Nannochloropsis oceanica)
ACAGACATCTTTTCTGTTATGCATGCCTCCTGCACCTCGACACTGCTTTT
TCTGCTCTTGGGCTGTACTGCGATTATCTTGACTGGGGCCTACCTCCGCC
GTGCATCAATGGGCACCGATAGAGGCGTGGCGGTGGGAGAAAATTCCACG
TCACTGGTGGCGCTGCGTGCTTCCACAGCCTTCGGCTCTCGGTCAGCTTC
GCGCTCAGGTGTCTCTTTCACTATATCCGCACAAGAAAGAGATAGCCGTG
GCCTGACGGGTGCCCTTGACAATCATGCCGGCTCCGTGAAAGGTAGCATG
CCGCAGAAACATGGACAGCCAAACCTCGCCATCGGCACACCGCCGCTCCA
AACTCTTCAGGGACAGGCGCTTGGGCCTGCGGAACTGCCAGCAACTATGC
CTTTTGCATCTCCTTACGTGGGGACCCCGTAGGACGCATGGAGAAGAGAC
ATATCCACTTTTCAATGAAAGTGAAATGTCTTTATGCTTTATGGCAGCGC
GGGAGAAGTTATCAAGCGAAAAAGATGGTGCGCAGGTTGGCGGACAGAAA
CCACCAGAGGGATAAAAGGAAGGAAGAGACACCGCACGTGCCAAAGTGAG
ACTTAGAATAGCAACTTTATTCTTTCCGAGTCGTTATTCATTCAAATTTT
ATATTTGAAATAGTGACTTATGGAAGGGTGCGGAAAACAAAAAAAAATTG
GACAGATGGGAGCAAGAAAAGAATTGAAAACGAC
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Coding sequence (CDS) from alignment at scaffold_36:140338..141071-

>mRNA_9176 ID=mRNA_9176|Name=jgi.p|Nanoce1779_2|606761|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_36:140338..141071- (Nannochloropsis oceanica)
ATGCATGCCTCCTGCACCTCGACACTGCTTTTTCTGCTCTTGGGCTGTAC
TGCGATTATCTTGACTGGGGCCTACCTCCGCCGTGCATCAATGGGCACCG
ATAGAGGCGTGGCGGTGGGAGAAAATTCCACGTCACTGGTGGCGCTGCGT
GCTTCCACAGCCTTCGGCTCTCGGTCAGCTTCGCGCTCAGGTGTCTCTTT
CACTATATCCGCACAAGAAAGAGATAGCCGTGGCCTGACGGGTGCCCTTG
ACAATCATGCCGGCTCCGTGAAAGGTAGCATGCCGCAGAAACATGGACAG
CCAAACCTCGCCATCGGCACACCGCCGCTCCAAACTCTTCAGGGACAGGC
GCTTGGGCCTGCGGAACTGCCAGCAACTATGCCTTTTGCATCTCCTTACG
TGGGGACCCCGTAG
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Synonyms
Publications