jgi.p|Nanoce1779_2|606757, mRNA_9175 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606757
Unique Name	mRNA_9175
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2906
Alignment location	scaffold_36:137295..140341 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606843
Track	FilteredModels2
ProteinId	606757

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:137295..140341 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606757	gene_9175	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606757	mRNA_9175-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9175	CDS_9175	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:137295..140341+
coding sequence from alignment at scaffold_36:137295..140341+

mRNA sequence

>mRNA_9175 ID=mRNA_9175|Name=jgi.p|Nanoce1779_2|606757|organism=Nannochloropsis oceanica|type=mRNA|length=2906bp
ACAGACAGGACTGAAGGCCAGCGTCGTCATCGAGACAGCCCGTCAAGGAA
CAAACATACGAGGTGAGACTCACGCGTGGAAATTTAGAGTGGGGCCATTC
CAAGGTCACGAAATGACATGTAGATGAGTGTCATTATTTAATTAATCTCC
AAACACTATGCATCTATCATGCCTATCCTGTCTGCCACTTTCCTTACCTT
GTTCAGCTCCCTCTTATCTTTGCCGCACATCACGCCCCGAGAAATCTCCT
CTGCCTTGGCGCCGGTGAGGTGTCTGCCTGCCTTACCCCTTTATATTCTT
ACTTGCTGATAGGAATACATTGAAGCTGTTGGTATTTGTCGTCGCGTAGA
CTGCTCGTCTCTCTCACTTTGTCTCACCGTGCGCTCTATCCTATCCGCTG
CATGCCCCCGGATTTCGCAGCAGTGCTCCGCACTGAGTGCCTGTACCTGC
CTGCATCCTGGTGCATAAGCCACCTCCTTATCTTTCTTATTCTCTTCCAA
TATTTCACCACCCTCCCCTCCCGCGCCACTGACCAGACCACCAAATCGAC
GAATTTCGGCATGTACGCTCAGCAGGAGGACGAGACCACTAGCCCAATGA
CCTATCGCAGGGTGGTAGCCCGCCACGACGAAGCAGAGGAAAACAAAGCC
ATTCTTTAACAGCTAGAGCAGCAAGCTAAAGTTTTGCGGGTTCGAGGCAG
CGAGCATCCCCTTAGTGGGGCGGTGACTGCCGCAGCCACTGCTACTGCTA
GTACTGCTGCTACCGTGACCACCTCGCATTTCAAAATGGACAGCCAGCAA
GAGGCCAAAGCTCAAGCGGCTGAGGCTCTGGCAAAAAACTACGCATTGAA
ATTGGATGTGATGAAGCAGCTTGAGAATTTTGAAATCGCACGAAGAATGT
ACTTCGATCACAAGCGCGAGTCGAATGCTATGTATTGGATGGCGTTTACC
CTTCTCATGAAACGCAGCAAGATTGAAAATACGCGTTATCTCGATTTCTT
TTCCCGCAAATTTGCCGCTGAAAATATGTACGCACGATGTTTCTTGGAGA
TAAAAGAAGAGTCCGAAAAGCTCAAGCATGGGGGAGAGCATAAATCGACT
CTAGAGATGGGCAGTGAAAAAGGATTTACTCAATGATGTAATAGGGGTCC
AGGAACACATGATGTATCAGGTGCATACATTTGGCAAGGTAATAGAGGGA
CAGATTTTGCCGGAGTTCGAGAAAATGGTCTTGACTTATAAGAAAGAGAT
GGAGCCGATTTTGGCGGATGGTAAGAGATATCTTGAGGACATCGAGCTGG
CGGAGGGGAATGTTCAGACGGCGTATAGGGAGTACAGGGACCAGGCGCAG
GCACTGGAGAAGATGGGGGTGAGCGACAGTGAGCTGGATTTGTGGGTTTT
TGAAATGCAGTACCGCGTGGCAGTGGGGCTCTTGTTGGAGACGTGGAAAG
TGTGTAGATCGGCGTTGGGGGCCCTGTTTAAACGGATGAAGGATGCGGAG
ATGACAAGGAGACGGGTCACTCACGCGGCACTGGGGACAGTGCTTGGCCA
GCAGACCACATATTGGAAGAGGCTCCCGGAGTATGGCCTGACGTTGCCCA
GCCAGGTACATCCTCGGGTGTCGGAACCGCGTTTAATCGAGAAAGAAATT
GGGGCTGATGTCAGGACGGGGGTTCAGAGGCTGCAGCATTCCCAGGAGGG
ATGGCGACGTAAGATTGTGGCCAATCGACCCATGCCTATGCGCACTCCTA
CTCCTTTTACGAGTGCTCCGGGCCTTGGAGGGACAAGTGTTGATTGGTCG
TCTAATTCGATGAACCTGGCTTTATCGACGAATGCTGTTGCTGCTGGTGC
CGCCGCGGGGGGTGAAGTGAAAGGAGTACGGACAAGAAGCAGCAGGAAGC
AGTTGGCCAAGGAGTTTACCCATGTACTAAAGGGCCCGTTGGACAGTCCG
TTGACGAAGCGTGTCCAGGTGTTCGAGCGGAAGAATAACAATGTCTTCAT
GCCCTGGAAACCCGTCCTGGCCGTCCTTACCGTCGACAACTACCTCCATA
TTTTCGACCTCCCCTCCTGTCGCAACAAAGCTACCACGGCTGCTACTGCT
ACTGCTGCTGCCGCAGCTGCCCAAGAGGCGTTCGAAAGCCTTGTGGCCAA
GCCAGAAACAGTTAGTCGTGCGTCCTGCGCGATTCCTCTCGCGAGTCCTA
CCACGAATCTCTTCCATAAAGAGAATGAGGGGGGAGGAATTGGGATCGTC
TCGCCGAGCAAGTCGTTTAATCTCGACATTTGCGATGCGCATTTTAAGGA
TGCAAAAAGTGTGAGAGATTTGTCTTTCGATATAATAGAGGCGGGCGTAC
GGGCGGGGGGGGGCATGGGTCTGCAGGGAGTTGTCAAGGACCTTGCCAAT
AAGCAGGTGGTGACTTTAAAAGGGCGGGATAAGGCGGAAATGACTGAGTG
GTGCAACGTTTTCCATACCTTGAAGCGAATGAAATGCGTCGATGCAGCGG
TGGGCGCTAGGTAATGGAGGGAGGAAGGGTAGAGGAAGACGAGAGAGGAA
GGGATCAGAAGGTGGGGAGGGAGGAGGGGTAGGAGAAGAGTGAAGTCTTC
CTCTTATGTAGTTGTTGGTATATATATATATGTAAGTGGGTGTACTGGAT
GATTATTATACATATACATAGAGCGAAGAACGGTTGAGATGATGGCAGAT
TAGAGGTAGCAGGACCACCGTGGTCTTAATGCGCAGTGCAAGAAAGAAGA
GGCTAAGTGGTATTTACTTTGATTTACGTATGTTAAATTGGGGCATGCTT
ACCCAGTGTGTGTGTGAAAATCTTCAGGGAAAATAGAGGTGAAATATAAT
TGAGCTGAATGTATACATGCATGCACATGTAAATTACCAAATGCTTTTTG
GTGTCG

protein sequence of jgi.p|Nanoce1779_2|606757

>mRNA_9175-protein ID=mRNA_9175-protein|Name=jgi.p|Nanoce1779_2|606757|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MMYQVHTFGKVIEGQILPEFEKMVLTYKKEMEPILADGKRYLEDIELAEG
NVQTAYREYRDQAQALEKMGVSDSELDLWVFEMQYRVAVGLLLETWKVCR
SALGALFKRMKDAEMTRRRVTHAALGTVLGQQTTYWKRLPEYGLTLPSQV
HPRVSEPRLIEKEIGADVRTGVQRLQHSQEGWRRKIVANRPMPMRTPTPF
TSAPGLGGTSVDWSSNSMNLALSTNAVAAGAAAGGEVKGVRTRSSRKQLA
KEFTHVLKGPLDSPLTKRVQVFERKNNNVFMPWKPVLAVLTVDNYLHIFD
LPSCRNKATTAATATAAAAAAQEAFESLVAKPETVSRASCAIPLASPTTN
LFHKENEGGGIGIVSPSKSFNLDICDAHFKDAKSVRDLSFDIIEAGVRAG
GGMGLQGVVKDLANKQVVTLKGRDKAEMTEWCNVFHTLKRMKCVDAAVGA
R*

mRNA from alignment at scaffold_36:137295..140341+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9175 ID=mRNA_9175|Name=jgi.p|Nanoce1779_2|606757|organism=Nannochloropsis oceanica|type=mRNA|length=3047bp|location=Sequence derived from alignment at scaffold_36:137295..140341+ (Nannochloropsis oceanica)
ACAGACAGGACTGAAGGCCAGCGTCGTCATCGAGACAGCCCGTCAAGGAA
CAAACATACGAGGTGAGACTCACGCGTGGAAATTTAGAGTGGGGCCATTC
CAAGGTCACGAAATGACATGTAGATGAGTGTCATTATTTAATTAATCTCC
AAACACTATGCATCTATCATGCCTATCCTGTCTGCCACTTTCCTTACCTT
GTTCAGCTCCCTCTTATCTTTGCCGCACATCACGCCCCGAGAAATCTCCT
CTGCCTTGGCGCCGGTGAGGTGTCTGCCTGCCTTACCCCTTTATATTCTT
ACTTGCTGATAGGAATACATTGAAGCTGTTGGTATTTGTCGTCGCGTAGA
CTGCTCGTCTCTCTCACTTTGTCTCACCGTGCGCTCTATCCTATCCGCTG
CATGCCCCCGGATTTCGCAGCAGTGCTCCGCACTGAGTGCCTGTACCTGC
CTGCATCCTGGTGCATAAGCCACCTCCTTATCTTTCTTATTCTCTTCCAA
TATTTCACCACCCTCCCCTCCCGCGCCACTGACCAGACCACCAAATCGAC
GAATTTCGGCATGTACGCTCAGCAGGAGGACGAGACCACTAGCCCAATGA
CCTATCGCAGGGTGGTAGCCCGCCACGACGAAGCAGAGGAAAACAAAGCC
ATTCTTTAACAGCTAGAGCAGCAAGCTAAAGTTTTGCGGGTTCGAGGCAG
CGAGCATCCCCTTAGTGGGGCGGTGACTGCCGCAGCCACTGCTACTGCTA
GTACTGCTGCTACCGTGACCACCTCGCATTTCAAAATGGACAGCCAGCAA
GAGGCCAAAGCTCAAGCGGCTGAGGCTCTGGCAAAAAACTACGCATTGAA
ATTGGATGTGATGAAGCAGCTTGAGAATTTTGAAATCGCACGAAGAATGT
ACTTCGATCACAAGCGCGAGTCGAATGCTATGTATTGGATGGCGTTTACC
CTTCTCATGAAACGCAGCAAGATTGAAAATACGCGTTATCTCGATTTCTT
TTCCCGCAAATTTGCCGCTGAAAATATGTACGCACGATGTTTCTTGGAGA
TAAAAGAAGAGTCCGAAAAGCTCAAGCATGGGGGAGAGCATAAATCGACT
CTAGAGATGGGCAGTGAAAAAGGATTTACTCAATGATGTAATAGGGGTCC
AGGAACACATGATGTATCAGGTGCATACATTTGGCAAGGTAATAGAGGGA
CAGATTTTGCCGGAGTTCGAGAAAATGGTCTTGACTTATAAGAAAGAGAT
GGAGCCGATTTTGGCGGATGGTAAGAGATATCTTGAGGACATCGAGCTGG
CGGAGGGGAATGTTCAGACGGCGTATAGGGAGTACAGGGACCAGGCGCAG
GCACTGGAGAAGATGGGGGTGAGCGACAGTGAGCTGGATTTGTGGGTTTT
TGAAATGCAGTACCGCGTGGCAGTGGGGCTCTTGTTGGAGACGTGGAAAG
TGTGTAGATCGGCGTTGGGGGCCCTGTTTAAACGGATGAAGGATGCGGAG
ATGACAAGGAGACGGGTCACTCACGCGGCACTGGGGACAGTGCTTGGCCA
GCAGACCACATATTGGAAGAGGCTCCCGGAGTATGGCCTGACGTTGCCCA
GCCAGGTACATCCTCGGGTGTCGGAACCGCGTTTAATCGAGAAAGAAATT
GGGGCTGATGTCAGGACGGGGGTTCAGAGGCTGCAGCATTCCCAGGAGGG
ATGGCGACGTAAGATTGTGGCCAATCGACCCATGCCTATGCGCACTCCTA
CTCCTTTTACGAGTGCTCCGGGCCTTGGAGGGACAAGTGTTGATTGGTCG
TCTAATTCGATGAACCTGGCTTTATCGACGAATGCTGTTGCTGCTGGTGC
CGCCGCGGGGGGTGAAGTGAAAGGAGTACGGACAAGAAGCAGCAGGAAGC
AGTTGGCCAAGGAGTTTACCCATGTACTAAAGGGCCCGTTGGACAGTCCG
TTGACGAAGCGTGTCCAGGTAGGCGGCACATACTCCCTCCCCCCCATCTA
CCTTTCATCCCCTTCTCCCTCATATGTTTGGGCTGAGAATTTGACACTCC
AAGTTCCATGACGCTTCTCGCCTCCCTCCTACCCTCCGTCCATCTGCTCC
CTTCCCCAGGTGTTCGAGCGGAAGAATAACAATGTCTTCATGCCCTGGAA
ACCCGTCCTGGCCGTCCTTACCGTCGACAACTACCTCCATATTTTCGACC
TCCCCTCCTGTCGCAACAAAGCTACCACGGCTGCTACTGCTACTGCTGCT
GCCGCAGCTGCCCAAGAGGCGTTCGAAAGCCTTGTGGCCAAGCCAGAAAC
AGTTAGTCGTGCGTCCTGCGCGATTCCTCTCGCGAGTCCTACCACGAATC
TCTTCCATAAAGAGAATGAGGGGGGAGGAATTGGGATCGTCTCGCCGAGC
AAGTCGTTTAATCTCGACATTTGCGATGCGCATTTTAAGGATGCAAAAAG
TGTGAGAGATTTGTCTTTCGATATAATAGAGGCGGGCGTACGGGCGGGGG
GGGGCATGGGTCTGCAGGGAGTTGTCAAGGACCTTGCCAATAAGCAGGTG
GTGACTTTAAAAGGGCGGGATAAGGCGGAAATGACTGAGTGGTGCAACGT
TTTCCATACCTTGAAGCGAATGAAATGCGTCGATGCAGCGGTGGGCGCTA
GGTAATGGAGGGAGGAAGGGTAGAGGAAGACGAGAGAGGAAGGGATCAGA
AGGTGGGGAGGGAGGAGGGGTAGGAGAAGAGTGAAGTCTTCCTCTTATGT
AGTTGTTGGTATATATATATATGTAAGTGGGTGTACTGGATGATTATTAT
ACATATACATAGAGCGAAGAACGGTTGAGATGATGGCAGATTAGAGGTAG
CAGGACCACCGTGGTCTTAATGCGCAGTGCAAGAAAGAAGAGGCTAAGTG
GTATTTACTTTGATTTACGTATGTTAAATTGGGGCATGCTTACCCAGTGT
GTGTGTGAAAATCTTCAGGGAAAATAGAGGTGAAATATAATTGAGCTGAA
TGTATACATGCATGCACATGTAAATTACCAAATGCTTTTTGGTGTCG

Coding sequence (CDS) from alignment at scaffold_36:137295..140341+

>mRNA_9175 ID=mRNA_9175|Name=jgi.p|Nanoce1779_2|606757|organism=Nannochloropsis oceanica|type=CDS|length=2712bp|location=Sequence derived from alignment at scaffold_36:137295..140341+ (Nannochloropsis oceanica)
ATGATGTATCAGGTGCATACATTTGGCAAGGTAATAGAGGGACAGATTTT
GCCGGAGTTCGAGAAAATGGTCTTGACTTATAAGAAAGAGATGGAGCCGA
TTTTGGCGGATGGTAAGAGATATCTTGAGGACATCGAGCTGGCGGAGGGG
AATGTTCAGACGGCGTATAGGGAGTACAGGGACCAGGCGCAGGCACTGGA
GAAGATGGGGGTGAGCGACAGTGAGCTGGATTTGTGGGTTTTTGAAATGC
AGTACCGCGTGGCAGTGGGGCTCTTGTTGGAGACGTGGAAAGTGTGTAGA
TCGGCGTTGGGGGCCCTGTTTAAACGGATGAAGGATGCGGAGATGACAAG
GAGACGGGTCACTCACGCGGCACTGGGGACAGTGCTTGGCCAGCAGACCA
CATATTGGAAGAGGCTCCCGGAGTATGGCCTGACGTTGCCCAGCCAGGTA
CATCCTCGGGTGTCGGAACCGCGTTTAATCGAGAAAGAAATTGGGGCTGA
TGTCAGGACGGGGGTTCAGAGGCTGCAGCATTCCCAGGAGGGATGGCGAC
GTAAGATTGTGGCCAATCGACCCATGCCTATGCGCACTCCTACTCCTTTT
ACGAGTGCTCCGGGCCTTGGAGGGACAAGTGTTGATTGGTCGTCTAATTC
GATGAACCTGGCTTTATCGACGAATGCTGTTGCTGCTGGTGCCGCCGCGG
GGGGTGAAGTGAAAGGAGTACGGACAAGAAGCAGCAGGAAGCAGTTGGCC
AAGGAGTTTACCCATGTACTAAAGGGCCCGTTGGACAGTCCGTTGACGAA
GCGTGTCCAGGTGTTCGAGCGGAAGAATAACAATGTCTTCATGCCCTGGA
AACCCGTCCTGGCCGTCCTTACCGTCGACAACTACCTCCATATTTTCGAC
CTCCCCTCCTGTCGCAACAAAGCTACCACGGCTGCTACTGCTACTGCTGC
TGCCGCAGCTGCCCAAGAGGCGTTCGAAAGCCTTGTGGCCAAGCCAGAAA
CAGTTAGTCGTGCGTCCTGCGCGATTCCTCTCGCGAGTCCTACCACGAAT
CTCTTCCATAAAGAGAATGAGGGGGGAGGAATTGGGATCGTCTCGCCGAG
CAAGTCGTTTAATCTCGACATTTGCGATGCGCATTTTAAGGATGCAAAAA
GTGTGAGAGATTTGTCTTTCGATATAATAGAGGCGGGCGTACGGGCGGGG
GGGGGCATGGGTCTGCAGGGAGTTGTCAAGGACCTTGCCAATAAGCAGGT
GGTGACTTTAAAAGGGCGGGATAAGGCGGAAATGACTGAGTGGTGCAACG
TTTTCCATACCTTGAAGCGAATGAAATGCGTCGATGCAGCGGTGGGCGCT
AGGTAAATGATGTATCAGGTGCATACATTTGGCAAGGTAATAGAGGGACA
GATTTTGCCGGAGTTCGAGAAAATGGTCTTGACTTATAAGAAAGAGATGG
AGCCGATTTTGGCGGATGGTAAGAGATATCTTGAGGACATCGAGCTGGCG
GAGGGGAATGTTCAGACGGCGTATAGGGAGTACAGGGACCAGGCGCAGGC
ACTGGAGAAGATGGGGGTGAGCGACAGTGAGCTGGATTTGTGGGTTTTTG
AAATGCAGTACCGCGTGGCAGTGGGGCTCTTGTTGGAGACGTGGAAAGTG
TGTAGATCGGCGTTGGGGGCCCTGTTTAAACGGATGAAGGATGCGGAGAT
GACAAGGAGACGGGTCACTCACGCGGCACTGGGGACAGTGCTTGGCCAGC
AGACCACATATTGGAAGAGGCTCCCGGAGTATGGCCTGACGTTGCCCAGC
CAGGTACATCCTCGGGTGTCGGAACCGCGTTTAATCGAGAAAGAAATTGG
GGCTGATGTCAGGACGGGGGTTCAGAGGCTGCAGCATTCCCAGGAGGGAT
GGCGACGTAAGATTGTGGCCAATCGACCCATGCCTATGCGCACTCCTACT
CCTTTTACGAGTGCTCCGGGCCTTGGAGGGACAAGTGTTGATTGGTCGTC
TAATTCGATGAACCTGGCTTTATCGACGAATGCTGTTGCTGCTGGTGCCG
CCGCGGGGGGTGAAGTGAAAGGAGTACGGACAAGAAGCAGCAGGAAGCAG
TTGGCCAAGGAGTTTACCCATGTACTAAAGGGCCCGTTGGACAGTCCGTT
GACGAAGCGTGTCCAGGTGTTCGAGCGGAAGAATAACAATGTCTTCATGC
CCTGGAAACCCGTCCTGGCCGTCCTTACCGTCGACAACTACCTCCATATT
TTCGACCTCCCCTCCTGTCGCAACAAAGCTACCACGGCTGCTACTGCTAC
TGCTGCTGCCGCAGCTGCCCAAGAGGCGTTCGAAAGCCTTGTGGCCAAGC
CAGAAACAGTTAGTCGTGCGTCCTGCGCGATTCCTCTCGCGAGTCCTACC
ACGAATCTCTTCCATAAAGAGAATGAGGGGGGAGGAATTGGGATCGTCTC
GCCGAGCAAGTCGTTTAATCTCGACATTTGCGATGCGCATTTTAAGGATG
CAAAAAGTGTGAGAGATTTGTCTTTCGATATAATAGAGGCGGGCGTACGG
GCGGGGGGGGGCATGGGTCTGCAGGGAGTTGTCAAGGACCTTGCCAATAA
GCAGGTGGTGACTTTAAAAGGGCGGGATAAGGCGGAAATGACTGAGTGGT
GCAACGTTTTCCATACCTTGAAGCGAATGAAATGCGTCGATGCAGCGGTG
GGCGCTAGGTAA

Synonyms

Publications