jgi.p|Nanoce1779_2|606756, mRNA_9174 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606756
Unique NamemRNA_9174
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length458
Alignment locationscaffold_36:136869..137326 +

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Properties
Property NameValue
TranscriptId606842
TrackFilteredModels2
ProteinId606756
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:136869..137326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606756gene_9174Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606756mRNA_9174-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9174CDS_9174Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9174 ID=mRNA_9174|Name=jgi.p|Nanoce1779_2|606756|organism=Nannochloropsis oceanica|type=mRNA|length=458bp
GCTACTATCAATTAACTTAACATTTATCATTACTCTTGCCTGTCGCTGTT
TGGAGTCAGCTGCTACTGGTGCTGCCAAGAAACGGCTATGTTTAAATTTC
AAAATCTCAATTGAGACGGACGCATACGCAACGTTGCATCATGATTTCGA
TCCTCCTCCCGGGCAACAGATCTCCCGAACCAAAATAACAATGTATACAG
AGCTCGATGATAAATTACTGGATGAATGTCCTGGCCCACTTCACCCATCC
TCATTGGTCTCGATTCGAAGCTTACACCCCGATATCTTGTCTTCCCCATT
CTACTGGCTTTGTTTGCCTGTTTGTCGTCCTTATTGGTCCCAATGCCCCT
ATAACTGCGAGCTTTCACTCGATGTATTCGGTGTTAAGCACTACTTACCT
GTTATCTCTCCATGCACACTACATACACAGACAGGACTGAAGGCCAGCGT
CGTCATCG
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protein sequence of jgi.p|Nanoce1779_2|606756

>mRNA_9174-protein ID=mRNA_9174-protein|Name=jgi.p|Nanoce1779_2|606756|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MINYWMNVLAHFTHPHWSRFEAYTPISCLPHSTGFVCLFVVLIGPNAPIT
ASFHSMYSVLSTTYLLSLHAHYIHRQD*
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mRNA from alignment at scaffold_36:136869..137326+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9174 ID=mRNA_9174|Name=jgi.p|Nanoce1779_2|606756|organism=Nannochloropsis oceanica|type=mRNA|length=458bp|location=Sequence derived from alignment at scaffold_36:136869..137326+ (Nannochloropsis oceanica)
GCTACTATCAATTAACTTAACATTTATCATTACTCTTGCCTGTCGCTGTT
TGGAGTCAGCTGCTACTGGTGCTGCCAAGAAACGGCTATGTTTAAATTTC
AAAATCTCAATTGAGACGGACGCATACGCAACGTTGCATCATGATTTCGA
TCCTCCTCCCGGGCAACAGATCTCCCGAACCAAAATAACAATGTATACAG
AGCTCGATGATAAATTACTGGATGAATGTCCTGGCCCACTTCACCCATCC
TCATTGGTCTCGATTCGAAGCTTACACCCCGATATCTTGTCTTCCCCATT
CTACTGGCTTTGTTTGCCTGTTTGTCGTCCTTATTGGTCCCAATGCCCCT
ATAACTGCGAGCTTTCACTCGATGTATTCGGTGTTAAGCACTACTTACCT
GTTATCTCTCCATGCACACTACATACACAGACAGGACTGAAGGCCAGCGT
CGTCATCG
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Coding sequence (CDS) from alignment at scaffold_36:136869..137326+

>mRNA_9174 ID=mRNA_9174|Name=jgi.p|Nanoce1779_2|606756|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_36:136869..137326+ (Nannochloropsis oceanica)
ATGATAAATTACTGGATGAATGTCCTGGCCCACTTCACCCATCCTCATTG
GTCTCGATTCGAAGCTTACACCCCGATATCTTGTCTTCCCCATTCTACTG
GCTTTGTTTGCCTGTTTGTCGTCCTTATTGGTCCCAATGCCCCTATAACT
GCGAGCTTTCACTCGATGTATTCGGTGTTAAGCACTACTTACCTGTTATC
TCTCCATGCACACTACATACACAGACAGGACTGA
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Synonyms
Publications