jgi.p|Nanoce1779_2|274293, mRNA_9171 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|274293
Unique Name	mRNA_9171
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2836
Alignment location	scaffold_36:127310..130145 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	274379
Track	FilteredModels2
ProteinId	274293

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:127310..130145 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|274293	gene_9171	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|274293	mRNA_9171-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9171	CDS_9171	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:127310..130145+
coding sequence from alignment at scaffold_36:127310..130145+

mRNA sequence

>mRNA_9171 ID=mRNA_9171|Name=jgi.p|Nanoce1779_2|274293|organism=Nannochloropsis oceanica|type=mRNA|length=2836bp
GTTATGAGATTCACAACAACACGCAAAACGCACTCAAAAAACGCACACGC
ACAGCCATGTCACAACTTCCTCGCTTATCCTTTCTGTAAGTCGGCTATAT
CCGCAAAGGGAGCGCTCTAGCAGCCAGAGAATTGACGATAATAATCAGCT
CCATCACATGTCGGCCGCCGCTTTCTCCTCCCCACCCTCCTCCCTGCCGC
CCACGTCACGCGAGCGACAAAGCCCACGCCCAACACGACCCCCACCATTG
CACCGCTTGCTTCTACGCGTTACATGCGTGGAGCTGGGCTCAAGCGGTAG
CGGCAACCACGATGACCATTCCCTCAACGACTTCGAGCACGACGAACCAC
CCCCCCTTCCTCCGCCGCCGCCTACCTCCCGTTCCTCCACCCCGCCTAGC
ACCCCGCGCTCCTCATCCTGGTCCTCCCGCACTTCCTCCGCTTTCTCCCA
GCAACATCAGCAACATCGACGTCAACGCACGAGCAGCCGAGAAAGACAGG
GAGGAGACCAAAGGGTCCGAGATGTAGTGGCCTTGAAAGAAACGACTGCT
AGTGCGGTTGTCCGTGGACTAGTTGAGGGGGAGATGCCCTGTGTCAGCAA
TGAGGTGGTGGCGAGGTATGCACTTGTAATGATGTATCCAATCAGGGAGG
AGGATGGGAGTTTGACGCATATCCTGCGTACATTGAGGGGGGAGGAGAAA
CCGTTGGAAGTCGTGGAGAAAGCGTTGGAGGAGGCGGAGGGAGGAATGGG
GGACAAGGACGAAGACGAGGGCGAGTGGGAAAGGGAAGAGAGAGTATGCG
ATATTGCCCTGGATGGTGAGCAAAGCATCCGTGCTTCGGAATCAGTTCCT
GCTCCGTCCTCTCCAACTGTCTCCCTTGGCACTAATCGAAAAGACAGCAC
AGCTCGGACACTGCCAACTCCAAAAGCAAAAGCAAAAGTGGAATGTAAAG
GAGCCTTCACCCGCACTCAACTTCTCGACGAAGGCCTCCTCTTCTGGCTC
CTAAAGGACCTCCGTGGCCCGCCCTTGGAGTTTGAGGGCTACGTGAGTGG
CGCCGAGACCTCGGACGACGAAGTGCCCTCCTCCTCTTCCTTCCTCTCTC
CCTCGTCCTCCTTCCCTCCTTCCTCTGATGTGGTGGGTCCTGTGTTTTAT
TCTGGATATTTGTTGAAGCAAAGCTCGCGGGATCCCTGTCTGTGGCGACG
ACGATGGTGTGTCTTAGGGGAGAACAAGATCTGGTACACCAAGGTAAAAC
ATCGAGAAGGGAGGGCGGGGGGTTGGGAAGGCGGAAGGGCAGGAGGAGGA
AGAAGGGGAAAGGTGGCGTTTTTGTCGCTGGTTGGACTGCAGGTGTTGGA
ATCGAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGTTATAGTGTTCTCA
CAACAGGAGCAGGCGCAGAAGCAGGAGGAGCAGCTGGAGCAGCAGCAGTA
GTACCGTTTGGGATAGAGCTTCACACGGCCCATGGCGTGCAAGTGTTCAG
GGCTGCTGAAAGGAGGGAGCAGGCGGGGTGGGTGGATGCAATTAGGAGGA
GGGTGGTCCTAAGTGAGGAGAATGAGTGGATGGCCATGGCGGAGCTGGTG
GTGGGGGAGGAGGAGAGGGCGAGGGGTAGGAGATATGAGAGGTGTGTAGA
ACAGGTCTGGAAAGAGGGAGGGAGGGGGGAGGTAAAAGACGAGGACGAGG
AAGAAAATGAAGGGAGTGAGGATTTGGTGGGGGGAAAGGATGGGAAGGAA
GAAATGGATTTCGAGGAGGACTCTCCAGCGAAAGGGGCACAGGCGAGGAA
GAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCCAGACAGCA
GGAGCATCAGCAAAAGCAGGAGGCAGGCAAGGATTCGCCGGCTCCTGTGC
GGAGGAGGAGGAAAAATGAGGGAAGGAGGGAGGGGTCTAGGCGAGAAGCT
GGCGTTCGTGTTGGCGGTGCAGGACTACAGGGAATTGTGTCGGTTGGAAA
GCGATCCTCTCCTGGCTCCCCCGGAGAGGAAATGGGCAGTGGCACAGGCT
GTCTACGATGAATTTTTAAGGGGAGCTGGGGGAAAGGGAGGAAGGGAGGA
GGAAGTGGCGGGGGTGTTGGAGGAGCATGCGGCAAGGCTGCGGGCGCGGA
GAGAGGGGAGGGGGGCGAGGGGAGGGATGGACGGAGGAGGGAAGGGTCCA
GGCACGAGCAAGCCGCTGGATGTACCTCGTTTGTTGAGAAGACAAGGGAA
GGGATCTTTGTCATCCTCCTCCCCCCCTCCCCCCTCCGATCTGAAGGAGA
TCGACGGGAGCACAGGGCCGTTGCCTTGTCCGCCGAAAGAGCTGTTTGAT
GACGTCATTCTGAGCTGGGGGGGGGCACAGCTCAACGACAGGAAGAAGGG
AGGGACGAAAGGAACACTAGGTTGAAAACGTCTATGTACATATCTACGGA
TGCATACAACAAGCGAAAGCACACAAAAAAGTCGATATCAGTGCACAAAG
CTGAAGCCATGCCTCCTTTTCTTTTTTGTCGTCGCCTCCTCCCTTCCATT
CTTTCTGTCAAGGACTTGCCCCTGAGGGCCCGGCAACACCATCAAAAAGG
CATGCAGCACATGAAGTTTCAGAAACCTCTACGAATGCACGAGCCACCGC
GCTAAAAGTCATGTGCGGTGTGATAGGACGCATGCGCCGAGCGGCCAGGA
TAGACGAAGGAGGACACACATGCTAAAAATGATCTCAGGTGGATGGTACC
CACGCACGCACAGCTACAAGATAAGTTAAAGCAAGGCCAAAGCATGTCAT
GAGTCAGGTATTGCTGGGTTCTTTTATCCCTCTCAA

protein sequence of jgi.p|Nanoce1779_2|274293

>mRNA_9171-protein ID=mRNA_9171-protein|Name=jgi.p|Nanoce1779_2|274293|organism=Nannochloropsis oceanica|type=polypeptide|length=756bp
MSAAAFSSPPSSLPPTSRERQSPRPTRPPPLHRLLLRVTCVELGSSGSGN
HDDHSLNDFEHDEPPPLPPPPPTSRSSTPPSTPRSSSWSSRTSSAFSQQH
QQHRRQRTSSRERQGGDQRVRDVVALKETTASAVVRGLVEGEMPCVSNEV
VARYALVMMYPIREEDGSLTHILRTLRGEEKPLEVVEKALEEAEGGMGDK
DEDEGEWEREERVCDIALDGEQSIRASESVPAPSSPTVSLGTNRKDSTAR
TLPTPKAKAKVECKGAFTRTQLLDEGLLFWLLKDLRGPPLEFEGYVSGAE
TSDDEVPSSSSFLSPSSSFPPSSDVVGPVFYSGYLLKQSSRDPCLWRRRW
CVLGENKIWYTKVKHREGRAGGWEGGRAGGGRRGKVAFLSLVGLQVLESS
RSSSSSSSSSYSVLTTGAGAEAGGAAGAAAVVPFGIELHTAHGVQVFRAA
ERREQAGWVDAIRRRVVLSEENEWMAMAELVVGEEERARGRRYERCVEQV
WKEGGRGEVKDEDEEENEGSEDLVGGKDGKEEMDFEEDSPAKGAQARKKG
SSSSSSSSSSSPDSRSISKSRRQARIRRLLCGGGGKMREGGRGLGEKLAF
VLAVQDYRELCRLESDPLLAPPERKWAVAQAVYDEFLRGAGGKGGREEEV
AGVLEEHAARLRARREGRGARGGMDGGGKGPGTSKPLDVPRLLRRQGKGS
LSSSSPPPPSDLKEIDGSTGPLPCPPKELFDDVILSWGGAQLNDRKKGGT
KGTLG*

mRNA from alignment at scaffold_36:127310..130145+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9171 ID=mRNA_9171|Name=jgi.p|Nanoce1779_2|274293|organism=Nannochloropsis oceanica|type=mRNA|length=2836bp|location=Sequence derived from alignment at scaffold_36:127310..130145+ (Nannochloropsis oceanica)
GTTATGAGATTCACAACAACACGCAAAACGCACTCAAAAAACGCACACGC
ACAGCCATGTCACAACTTCCTCGCTTATCCTTTCTGTAAGTCGGCTATAT
CCGCAAAGGGAGCGCTCTAGCAGCCAGAGAATTGACGATAATAATCAGCT
CCATCACATGTCGGCCGCCGCTTTCTCCTCCCCACCCTCCTCCCTGCCGC
CCACGTCACGCGAGCGACAAAGCCCACGCCCAACACGACCCCCACCATTG
CACCGCTTGCTTCTACGCGTTACATGCGTGGAGCTGGGCTCAAGCGGTAG
CGGCAACCACGATGACCATTCCCTCAACGACTTCGAGCACGACGAACCAC
CCCCCCTTCCTCCGCCGCCGCCTACCTCCCGTTCCTCCACCCCGCCTAGC
ACCCCGCGCTCCTCATCCTGGTCCTCCCGCACTTCCTCCGCTTTCTCCCA
GCAACATCAGCAACATCGACGTCAACGCACGAGCAGCCGAGAAAGACAGG
GAGGAGACCAAAGGGTCCGAGATGTAGTGGCCTTGAAAGAAACGACTGCT
AGTGCGGTTGTCCGTGGACTAGTTGAGGGGGAGATGCCCTGTGTCAGCAA
TGAGGTGGTGGCGAGGTATGCACTTGTAATGATGTATCCAATCAGGGAGG
AGGATGGGAGTTTGACGCATATCCTGCGTACATTGAGGGGGGAGGAGAAA
CCGTTGGAAGTCGTGGAGAAAGCGTTGGAGGAGGCGGAGGGAGGAATGGG
GGACAAGGACGAAGACGAGGGCGAGTGGGAAAGGGAAGAGAGAGTATGCG
ATATTGCCCTGGATGGTGAGCAAAGCATCCGTGCTTCGGAATCAGTTCCT
GCTCCGTCCTCTCCAACTGTCTCCCTTGGCACTAATCGAAAAGACAGCAC
AGCTCGGACACTGCCAACTCCAAAAGCAAAAGCAAAAGTGGAATGTAAAG
GAGCCTTCACCCGCACTCAACTTCTCGACGAAGGCCTCCTCTTCTGGCTC
CTAAAGGACCTCCGTGGCCCGCCCTTGGAGTTTGAGGGCTACGTGAGTGG
CGCCGAGACCTCGGACGACGAAGTGCCCTCCTCCTCTTCCTTCCTCTCTC
CCTCGTCCTCCTTCCCTCCTTCCTCTGATGTGGTGGGTCCTGTGTTTTAT
TCTGGATATTTGTTGAAGCAAAGCTCGCGGGATCCCTGTCTGTGGCGACG
ACGATGGTGTGTCTTAGGGGAGAACAAGATCTGGTACACCAAGGTAAAAC
ATCGAGAAGGGAGGGCGGGGGGTTGGGAAGGCGGAAGGGCAGGAGGAGGA
AGAAGGGGAAAGGTGGCGTTTTTGTCGCTGGTTGGACTGCAGGTGTTGGA
ATCGAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGTTATAGTGTTCTCA
CAACAGGAGCAGGCGCAGAAGCAGGAGGAGCAGCTGGAGCAGCAGCAGTA
GTACCGTTTGGGATAGAGCTTCACACGGCCCATGGCGTGCAAGTGTTCAG
GGCTGCTGAAAGGAGGGAGCAGGCGGGGTGGGTGGATGCAATTAGGAGGA
GGGTGGTCCTAAGTGAGGAGAATGAGTGGATGGCCATGGCGGAGCTGGTG
GTGGGGGAGGAGGAGAGGGCGAGGGGTAGGAGATATGAGAGGTGTGTAGA
ACAGGTCTGGAAAGAGGGAGGGAGGGGGGAGGTAAAAGACGAGGACGAGG
AAGAAAATGAAGGGAGTGAGGATTTGGTGGGGGGAAAGGATGGGAAGGAA
GAAATGGATTTCGAGGAGGACTCTCCAGCGAAAGGGGCACAGGCGAGGAA
GAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCCAGACAGCA
GGAGCATCAGCAAAAGCAGGAGGCAGGCAAGGATTCGCCGGCTCCTGTGC
GGAGGAGGAGGAAAAATGAGGGAAGGAGGGAGGGGTCTAGGCGAGAAGCT
GGCGTTCGTGTTGGCGGTGCAGGACTACAGGGAATTGTGTCGGTTGGAAA
GCGATCCTCTCCTGGCTCCCCCGGAGAGGAAATGGGCAGTGGCACAGGCT
GTCTACGATGAATTTTTAAGGGGAGCTGGGGGAAAGGGAGGAAGGGAGGA
GGAAGTGGCGGGGGTGTTGGAGGAGCATGCGGCAAGGCTGCGGGCGCGGA
GAGAGGGGAGGGGGGCGAGGGGAGGGATGGACGGAGGAGGGAAGGGTCCA
GGCACGAGCAAGCCGCTGGATGTACCTCGTTTGTTGAGAAGACAAGGGAA
GGGATCTTTGTCATCCTCCTCCCCCCCTCCCCCCTCCGATCTGAAGGAGA
TCGACGGGAGCACAGGGCCGTTGCCTTGTCCGCCGAAAGAGCTGTTTGAT
GACGTCATTCTGAGCTGGGGGGGGGCACAGCTCAACGACAGGAAGAAGGG
AGGGACGAAAGGAACACTAGGTTGAAAACGTCTATGTACATATCTACGGA
TGCATACAACAAGCGAAAGCACACAAAAAAGTCGATATCAGTGCACAAAG
CTGAAGCCATGCCTCCTTTTCTTTTTTGTCGTCGCCTCCTCCCTTCCATT
CTTTCTGTCAAGGACTTGCCCCTGAGGGCCCGGCAACACCATCAAAAAGG
CATGCAGCACATGAAGTTTCAGAAACCTCTACGAATGCACGAGCCACCGC
GCTAAAAGTCATGTGCGGTGTGATAGGACGCATGCGCCGAGCGGCCAGGA
TAGACGAAGGAGGACACACATGCTAAAAATGATCTCAGGTGGATGGTACC
CACGCACGCACAGCTACAAGATAAGTTAAAGCAAGGCCAAAGCATGTCAT
GAGTCAGGTATTGCTGGGTTCTTTTATCCCTCTCAA

Coding sequence (CDS) from alignment at scaffold_36:127310..130145+

>mRNA_9171 ID=mRNA_9171|Name=jgi.p|Nanoce1779_2|274293|organism=Nannochloropsis oceanica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_36:127310..130145+ (Nannochloropsis oceanica)
ATGTCGGCCGCCGCTTTCTCCTCCCCACCCTCCTCCCTGCCGCCCACGTC
ACGCGAGCGACAAAGCCCACGCCCAACACGACCCCCACCATTGCACCGCT
TGCTTCTACGCGTTACATGCGTGGAGCTGGGCTCAAGCGGTAGCGGCAAC
CACGATGACCATTCCCTCAACGACTTCGAGCACGACGAACCACCCCCCCT
TCCTCCGCCGCCGCCTACCTCCCGTTCCTCCACCCCGCCTAGCACCCCGC
GCTCCTCATCCTGGTCCTCCCGCACTTCCTCCGCTTTCTCCCAGCAACAT
CAGCAACATCGACGTCAACGCACGAGCAGCCGAGAAAGACAGGGAGGAGA
CCAAAGGGTCCGAGATGTAGTGGCCTTGAAAGAAACGACTGCTAGTGCGG
TTGTCCGTGGACTAGTTGAGGGGGAGATGCCCTGTGTCAGCAATGAGGTG
GTGGCGAGGTATGCACTTGTAATGATGTATCCAATCAGGGAGGAGGATGG
GAGTTTGACGCATATCCTGCGTACATTGAGGGGGGAGGAGAAACCGTTGG
AAGTCGTGGAGAAAGCGTTGGAGGAGGCGGAGGGAGGAATGGGGGACAAG
GACGAAGACGAGGGCGAGTGGGAAAGGGAAGAGAGAGTATGCGATATTGC
CCTGGATGGTGAGCAAAGCATCCGTGCTTCGGAATCAGTTCCTGCTCCGT
CCTCTCCAACTGTCTCCCTTGGCACTAATCGAAAAGACAGCACAGCTCGG
ACACTGCCAACTCCAAAAGCAAAAGCAAAAGTGGAATGTAAAGGAGCCTT
CACCCGCACTCAACTTCTCGACGAAGGCCTCCTCTTCTGGCTCCTAAAGG
ACCTCCGTGGCCCGCCCTTGGAGTTTGAGGGCTACGTGAGTGGCGCCGAG
ACCTCGGACGACGAAGTGCCCTCCTCCTCTTCCTTCCTCTCTCCCTCGTC
CTCCTTCCCTCCTTCCTCTGATGTGGTGGGTCCTGTGTTTTATTCTGGAT
ATTTGTTGAAGCAAAGCTCGCGGGATCCCTGTCTGTGGCGACGACGATGG
TGTGTCTTAGGGGAGAACAAGATCTGGTACACCAAGGTAAAACATCGAGA
AGGGAGGGCGGGGGGTTGGGAAGGCGGAAGGGCAGGAGGAGGAAGAAGGG
GAAAGGTGGCGTTTTTGTCGCTGGTTGGACTGCAGGTGTTGGAATCGAGC
AGAAGCAGCAGCAGCAGCAGCAGCAGCAGTTATAGTGTTCTCACAACAGG
AGCAGGCGCAGAAGCAGGAGGAGCAGCTGGAGCAGCAGCAGTAGTACCGT
TTGGGATAGAGCTTCACACGGCCCATGGCGTGCAAGTGTTCAGGGCTGCT
GAAAGGAGGGAGCAGGCGGGGTGGGTGGATGCAATTAGGAGGAGGGTGGT
CCTAAGTGAGGAGAATGAGTGGATGGCCATGGCGGAGCTGGTGGTGGGGG
AGGAGGAGAGGGCGAGGGGTAGGAGATATGAGAGGTGTGTAGAACAGGTC
TGGAAAGAGGGAGGGAGGGGGGAGGTAAAAGACGAGGACGAGGAAGAAAA
TGAAGGGAGTGAGGATTTGGTGGGGGGAAAGGATGGGAAGGAAGAAATGG
ATTTCGAGGAGGACTCTCCAGCGAAAGGGGCACAGGCGAGGAAGAAGGGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCCAGACAGCAGGAGCAT
CAGCAAAAGCAGGAGGCAGGCAAGGATTCGCCGGCTCCTGTGCGGAGGAG
GAGGAAAAATGAGGGAAGGAGGGAGGGGTCTAGGCGAGAAGCTGGCGTTC
GTGTTGGCGGTGCAGGACTACAGGGAATTGTGTCGGTTGGAAAGCGATCC
TCTCCTGGCTCCCCCGGAGAGGAAATGGGCAGTGGCACAGGCTGTCTACG
ATGAATTTTTAAGGGGAGCTGGGGGAAAGGGAGGAAGGGAGGAGGAAGTG
GCGGGGGTGTTGGAGGAGCATGCGGCAAGGCTGCGGGCGCGGAGAGAGGG
GAGGGGGGCGAGGGGAGGGATGGACGGAGGAGGGAAGGGTCCAGGCACGA
GCAAGCCGCTGGATGTACCTCGTTTGTTGAGAAGACAAGGGAAGGGATCT
TTGTCATCCTCCTCCCCCCCTCCCCCCTCCGATCTGAAGGAGATCGACGG
GAGCACAGGGCCGTTGCCTTGTCCGCCGAAAGAGCTGTTTGATGACGTCA
TTCTGAGCTGGGGGGGGGCACAGCTCAACGACAGGAAGAAGGGAGGGACG
AAAGGAACACTAGGTTGA

Synonyms

Publications