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Properties
| Property Name | Value |
|---|
| TranscriptId | 633590 |
| Track | FilteredModels2 |
| ProteinId | 633504 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:124291..127214 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9170 ID=mRNA_9170|Name=jgi.p|Nanoce1779_2|633504|organism=Nannochloropsis oceanica|type=mRNA|length=2493bp
AACAGCGCGACATTTAGCAGAATAAGAGTATGCCTTCATCCTTATCCTTT
GCCGCCGCGCCCAACAGGCCCTGGTCACCAGCCTCCACCTCCTCCAACTC
TTCGTTTGCCACCCACTGCCGCCCCCGAGGCTACATACTGGCGCCTTCTA
CTAACACCACGAAAAGTGAGCAGAAGCGACATTCCGTCCGCTACACTTCG
CGATACCTGCAAGAAGCCCAACAACGCGCCATCTCCCGCTCTGCTCAGCG
ATTGCATTTGCTTCGACAATCTCGGCTGCACGCGGAGAATGAGTGGGACA
GGGAAGAATCCTCTGCTGCGGCTGCGGCTGCAGCTGCTGCACTTGAGGCC
AAAAAGGTGGCGAAAAGGGATTCAGTTGGGTCACCTATGCTTTTTCCATC
AATAGCCCTGAAGTGTGGATGCAGTAGTGTCTTGAAGCCCCTTCCATCTC
CTCCCTCTGGCGGCGGTGACAAGTCCAGGCCATGGACCCCGCCTCCATCT
CCCCGCAGCCGTGAGGGTGGCGCGAGCATGACCATCCCTCCTCTCCCTAA
TACTACATCCCGCAACACAACGTTCAGCGTCAATTCTCAACGATCAGGAC
ATTGTCATCAACATGCGCACGTCAAGACTGCAAAAGGAAGCCTTGCTGGC
GCCACCACTACTGCCAACACAACCACAAGGAGCGGCAGCTGCAGCGGCAG
CAGCAGGACTCCAATTACTCGCATTATCAAGGGTGAATGGATCCGACATT
CTTCAAGTCAAACTGGAGGGGAAGGACTTTATTGCCTGCTTGATGAGGGA
GGAGGAACAGTGGGGTTTCCCCAGCGACGCCGACGCCGGGGCCGAAAAAG
AGGAGATGAAGATGGAGGAGGAGGAGCAGGAGGAGCAGGAGAAGCAGGAG
CAGTAGGGGGAAGGACTATGCCCTCGTGTACTCGGGCTTGCTCGCCCATC
GATCCTACAATTGTGGCTTGCATTTTACTGGAGGAGGAGGCCCAGCTGCA
GCAGCAGGAAGAGGAGAAGGAATGGCGGAATAACGAAAGAGTGCGGGAGG
AGGAGGATTCGCGGACGAAAAGGAATACATCAATAGAGGTCTGGCAGCAA
AATGATAAGGGAAGAGTGGAAGGGTTTGAACAGCAGAGTCAGCAGCAGAG
GCATCAGCAGGTCCGCTTTCGGTACTACTACGCCGAGAAGCCGCACCCTT
CGCCGTATCGTCGAGCAGCAGCACCACCACCACCAGCAGATGCACCAGTG
TTGCTTCCACGCAAGCAGCGAAAGCAGCACCAGCAACAGCAGGGGCGACA
TAATCATTTTGATAAGGAAGAGGAGGACGAAGACTTGACGCGCGAGCTGT
GCAGTAAACAGGACCTTGGGGAGCGGGAGGAGCAAGAGATGGGGAGGGAA
GAGAGGCGATGTTTCTCGCTTTCCTCGACACCATCGCCATCGTCTTTTGG
CTCCTCCTCCTCCGTCTCCGTCTCGTCCTCCTCCTGGAAAGACGTCATCC
CTTTGCCGCGTGAAAATCACAATGCGAGGCGAGAGGGTCATGTTATCCCC
TTAGATGTGTCCGAGCGAGAGCAAGCGGATATCGAGGGGAAGCATGGAGT
AAAGTGCACACATATTTGGGGGGAAAAGAAAGGGAGGGAGGCACAAAAAA
TGAGAGTAGCAAGGCGGCTGGCGGAGGAGGTAGCCAACGAGCTGGTGAAG
GAAGCGAGTGAGGAGTTGGAGGGCATCTTAAGAGGCTACGCCGAGGACGT
CTTTGCCTGGCTCTGAAAGACGAAAAGACATACAAACAAGATGTCGGGTA
CCTATTTGGAAGCAAACAAAGAAGATTCACATAAGGCCATCGACAAACCT
CTTAACGTATTTTTCGACTACTTGCTCGGGGATATAAGTGAAATTCAAAT
GCATATGTGAGAGAGTGTTTTGTGATTCTCGTGCCTTCTTTTTTCTATAT
GTGGTTCCGTTCTTCTCGACAGTCTTTCCAACTGGCTGCCTGCTTTCCTC
TCCCTCCCTCGTTTGCCTCCTATATGTCTTCTCCCTTCCCCTCCACGCGG
CATGGCCGTCTCACTTTCCCGTGCAGTCGTGGTCGTGGCTTTACACTTTG
CTGTACTCCAACTTCCCCTCCAGCTTTTTGGCATCCATCAGCTTCCGACT
CGCCTTCATGAAGTCCTCTTCCAAGACGTAGTCCCTCCCCGCCCTGATGG
CAAACAGGCCCGCCTCCGTGCACACGTTCCGAATGTCCGCGCAATTAAAC
CCGTCCGTGAGCTTCACGATGCTCTCGTAGTCGATCTCCCCGCGCTTGGT
GATGGGCGCTAAGGGGAATGGCAGAGGGGCATAGATTAAGGGCTGAATGG
CACTGTTTGATTTACTCTCTTGACTCGTGGATTACCGTGGTGATCTCTTT
TGTTTCCAGGCTCTCCCTTCCTCGCCTCGTCGCCTCTCCGCCCTCCCTCC
CTCTCGACCTTCCTCCCTACCTGCATGGATCTTGAGCACGTCC back to topprotein sequence of jgi.p|Nanoce1779_2|633504 >mRNA_9170-protein ID=mRNA_9170-protein|Name=jgi.p|Nanoce1779_2|633504|organism=Nannochloropsis oceanica|type=polypeptide|length=579bp
MPSSLSFAAAPNRPWSPASTSSNSSFATHCRPRGYILAPSTNTTKSEQKR
HSVRYTSRYLQEAQQRAISRSAQRLHLLRQSRLHAENEWDREESSAAAAA
AAAALEAKKVAKRDSVGSPMLFPSIALKCGCSSVLKPLPSPPSGGGDKSR
PWTPPPSPRSREGGASMTIPPLPNTTSRNTTFSVNSQRSGHCHQHAHVKT
AKGSLAGATTTANTTTRSGSCSGSSRTPITRIIKGEWIRHSSSQTGGEGL
YCLLDEGGGTVGFPQRRRRRGRKRGDEDGGGGAGGAGEAGAVGGRTMPSC
TRACSPIDPTIVACILLEEEAQLQQQEEEKEWRNNERVREEEDSRTKRNT
SIEVWQQNDKGRVEGFEQQSQQQRHQQVRFRYYYAEKPHPSPYRRAAAPP
PPADAPVLLPRKQRKQHQQQQGRHNHFDKEEEDEDLTRELCSKQDLGERE
EQEMGREERRCFSLSSTPSPSSFGSSSSVSVSSSSWKDVIPLPRENHNAR
REGHVIPLDVSEREQADIEGKHGVKCTHIWGEKKGREAQKMRVARRLAEE
VANELVKEASEELEGILRGYAEDVFAWL* back to topmRNA from alignment at scaffold_36:124291..127214- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9170 ID=mRNA_9170|Name=jgi.p|Nanoce1779_2|633504|organism=Nannochloropsis oceanica|type=mRNA|length=2924bp|location=Sequence derived from alignment at scaffold_36:124291..127214- (Nannochloropsis oceanica)
AACAGCGCGACATTTAGCAGAATAAGAGTATGCCTTCATCCTTATCCTTT
GCCGCCGCGCCCAACAGGCCCTGGTCACCAGCCTCCACCTCCTCCAACTC
TTCGTTTGCCACCCACTGCCGCCCCCGAGGCTACATACTGGCGCCTTCTA
CTAACACCACGAAAAGTGAGCAGAAGCGACATTCCGTCCGCTACACTTCG
CGATACCTGCAAGAAGCCCAACAACGCGCCATCTCCCGCTCTGCTCAGCG
ATTGCATTTGCTTCGACAATCTCGGCTGCACGCGGAGAATGAGTGGGACA
GGGAAGAATCCTCTGCTGCGGCTGCGGCTGCAGCTGCTGCACTTGAGGCC
AAAAAGGTGGCGAAAAGGGATTCAGTTGGGTCACCTATGCTTTTTCCATC
AATAGCCCTGAAGTGTGGATGCAGTAGTGTCTTGAAGCCCCTTCCATCTC
CTCCCTCTGGCGGCGGTGACAAGTCCAGGCCATGGACCCCGCCTCCATCT
CCCCGCAGCCGTGAGGGTGGCGCGAGCATGACCATCCCTCCTCTCCCTAA
TACTACATCCCGCAACACAACGTTCAGCGTCAATTCTCAACGATCAGGAC
ATTGTCATCAACATGCGCACGTCAAGACTGCAAAAGGAAGCCTTGCTGGC
GCCACCACTACTGCCAACACAACCACAAGGAGCGGCAGCTGCAGCGGCAG
CAGCAGGACTCCAATTACTCGCATTATCAAGGGTGAATGGATCCGACATT
CTTCAAGTCAAACTGGAGGGGAAGGACTTTATTGCCTGCTTGATGAGGGA
GGAGGAACAGTGGGGTTTCCCCAGCGACGCCGACGCCGGGGCCGAAAAAG
AGGAGATGAAGATGGAGGAGGAGGAGCAGGAGGAGCAGGAGAAGCAGGAG
CAGTAGGGGGAAGGACTATGCCCTCGTGTACTCGGGCTTGCTCGCCCATC
GATCCTACAATTGTGGCTTGCATTTTACTGGAGGAGGAGGCCCAGCTGCA
GCAGCAGGAAGAGGAGAAGGAATGGCGGAATAACGAAAGAGTGCGGGAGG
AGGAGGATTCGCGGACGAAAAGGAATACATCAATAGAGGTCTGGCAGCAA
AATGATAAGGGAAGAGTGGAAGGGTTTGAACAGCAGAGTCAGCAGCAGAG
GCATCAGCAGGTCCGCTTTCGGTACTACTACGCCGAGAAGCCGCACCCTT
CGCCGTATCGTCGAGCAGCAGCACCACCACCACCAGCAGATGCACCAGTG
TTGCTTCCACGCAAGCAGCGAAAGCAGCACCAGCAACAGCAGGGGCGACA
TAATCATTTTGATAAGGAAGAGGAGGACGAAGACTTGACGCGCGAGCTGT
GCAGTAAACAGGACCTTGGGGAGCGGGAGGAGCAAGAGATGGGGAGGGAA
GAGAGGCGATGTTTCTCGCTTTCCTCGACACCATCGCCATCGTCTTTTGG
CTCCTCCTCCTCCGTCTCCGTCTCGTCCTCCTCCTGGAAAGACGTCATCC
CTTTGCCGCGTGAAAATCACAATGCGAGGCGAGAGGGTCATGTTATCCCC
TTAGATGTGTCCGAGCGAGAGCAAGCGGATATCGAGGGGAAGCATGGAGT
AAAGTGCACACATATTTGGGGGGAAAAGAAAGGGAGGGAGGCACAAAAAA
TGAGAGTAGCAAGGCGGTAAGTGATGCGAGTGTGATGATGGAGTGGATGG
GAGGTGGCAGACATCTCCGGCACTCCCACCCTCATTGCCGTAGCCTCGCG
CTCTGCTGAGTGGTACATGGAAGAAACCGTCAGTCTTGTCTCTTAAACCT
TCCTGCCCAGCCCTTCTGACAGGCACGGATGCGATGGTGTGCAGTTCAGA
CATCACCAGATGTGCTCACTGAGTCTCTCTCACTTCTTACAATGTCCCTG
TAGGCTGGCGGAGGAGGTAGCCAACGAGCTGGTGAAGGAAGCGAGTGAGG
AGTTGGAGGGCATCTTAAGAGGCTACGCCGAGGACGTCTTTGCCTGGCTC
TGAAAGACGAAAAGACATACAAACAAGATGTCGGGTACCTATTTGGAAGC
AAACAAAGAAGATTCACATAAGGCCATCGACAAACCTCTTAACGTATTTT
TCGACTACTTGCTCGGGGATATAAGTGAAATTCAAATGCATATGTGAGAG
AGTGTTTTGTGATTCTCGTGCCTTCTTTTTTCTATATGTGGTTCCGTTCT
TCTCGACAGTCTTTCCAACTGGCTGCCTGCTTTCCTCTCCCTCCCTCGTT
TGCCTCCTATATGTCTTCTCCCTTCCCCTCCACGCGGCATGGCCGTCTCA
CTTTCCCGTGCAGTCGTGGTCGTGGCTTTACACTCTGTTATTGTTGGGGG
GCAGAGAGGGCAAGGAGTAGATAGGATAATACAAATCAATACATAGGGCG
GTGAAAGCGCTCATTCATAGAATTAAATAAAAGACATAATCTCCTTCCCT
CTCTCCTTCCCTCTCTCCTTCCCTCTCTCCTTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCATCCAACGTACTTGCTGTACTCCAACTTCCCCT
CCAGCTTTTTGGCATCCATCAGCTTCCGACTCGCCTTCATGAAGTCCTCT
TCCAAGACGTAGTCCCTCCCCGCCCTGATGGCAAACAGGCCCGCCTCCGT
GCACACGTTCCGAATGTCCGCGCAATTAAACCCGTCCGTGAGCTTCACGA
TGCTCTCGTAGTCGATCTCCCCGCGCTTGGTGATGGGCGCTAAGGGGAAT
GGCAGAGGGGCATAGATTAAGGGCTGAATGGCACTGTTTGATTTACTCTC
TTGACTCGTGGATTACCGTGGTGATCTCTTTTGTTTCCAGGCTCTCCCTT
CCTCGCCTCGTCGCCTCTCCGCCCTCCCTCCCTCTCGACCTTCCTCCCTA
CCTGCATGGATCTTGAGCACGTCC back to topCoding sequence (CDS) from alignment at scaffold_36:124291..127214- >mRNA_9170 ID=mRNA_9170|Name=jgi.p|Nanoce1779_2|633504|organism=Nannochloropsis oceanica|type=CDS|length=3474bp|location=Sequence derived from alignment at scaffold_36:124291..127214- (Nannochloropsis oceanica)
GCTGGCGGAGGAGGTAGCCAACGAGCTGGTGAAGGAAGCGAGTGAGGAGT
TGGAGGGCATCTTAAGAGGCTACGCCGAGGACGTCTTTGCCTGGCTCTGA
ATGCCTTCATCCTTATCCTTTGCCGCCGCGCCCAACAGGCCCTGGTCACC
AGCCTCCACCTCCTCCAACTCTTCGTTTGCCACCCACTGCCGCCCCCGAG
GCTACATACTGGCGCCTTCTACTAACACCACGAAAAGTGAGCAGAAGCGA
CATTCCGTCCGCTACACTTCGCGATACCTGCAAGAAGCCCAACAACGCGC
CATCTCCCGCTCTGCTCAGCGATTGCATTTGCTTCGACAATCTCGGCTGC
ACGCGGAGAATGAGTGGGACAGGGAAGAATCCTCTGCTGCGGCTGCGGCT
GCAGCTGCTGCACTTGAGGCCAAAAAGGTGGCGAAAAGGGATTCAGTTGG
GTCACCTATGCTTTTTCCATCAATAGCCCTGAAGTGTGGATGCAGTAGTG
TCTTGAAGCCCCTTCCATCTCCTCCCTCTGGCGGCGGTGACAAGTCCAGG
CCATGGACCCCGCCTCCATCTCCCCGCAGCCGTGAGGGTGGCGCGAGCAT
GACCATCCCTCCTCTCCCTAATACTACATCCCGCAACACAACGTTCAGCG
TCAATTCTCAACGATCAGGACATTGTCATCAACATGCGCACGTCAAGACT
GCAAAAGGAAGCCTTGCTGGCGCCACCACTACTGCCAACACAACCACAAG
GAGCGGCAGCTGCAGCGGCAGCAGCAGGACTCCAATTACTCGCATTATCA
AGGGTGAATGGATCCGACATTCTTCAAGTCAAACTGGAGGGGAAGGACTT
TATTGCCTGCTTGATGAGGGAGGAGGAACAGTGGGGTTTCCCCAGCGACG
CCGACGCCGGGGCCGAAAAAGAGGAGATGAAGATGGAGGAGGAGGAGCAG
GAGGAGCAGGAGAAGCAGGAGCAGTAGGGGGAAGGACTATGCCCTCGTGT
ACTCGGGCTTGCTCGCCCATCGATCCTACAATTGTGGCTTGCATTTTACT
GGAGGAGGAGGCCCAGCTGCAGCAGCAGGAAGAGGAGAAGGAATGGCGGA
ATAACGAAAGAGTGCGGGAGGAGGAGGATTCGCGGACGAAAAGGAATACA
TCAATAGAGGTCTGGCAGCAAAATGATAAGGGAAGAGTGGAAGGGTTTGA
ACAGCAGAGTCAGCAGCAGAGGCATCAGCAGGTCCGCTTTCGGTACTACT
ACGCCGAGAAGCCGCACCCTTCGCCGTATCGTCGAGCAGCAGCACCACCA
CCACCAGCAGATGCACCAGTGTTGCTTCCACGCAAGCAGCGAAAGCAGCA
CCAGCAACAGCAGGGGCGACATAATCATTTTGATAAGGAAGAGGAGGACG
AAGACTTGACGCGCGAGCTGTGCAGTAAACAGGACCTTGGGGAGCGGGAG
GAGCAAGAGATGGGGAGGGAAGAGAGGCGATGTTTCTCGCTTTCCTCGAC
ACCATCGCCATCGTCTTTTGGCTCCTCCTCCTCCGTCTCCGTCTCGTCCT
CCTCCTGGAAAGACGTCATCCCTTTGCCGCGTGAAAATCACAATGCGAGG
CGAGAGGGTCATGTTATCCCCTTAGATGTGTCCGAGCGAGAGCAAGCGGA
TATCGAGGGGAAGCATGGAGTAAAGTGCACACATATTTGGGGGGAAAAGA
AAGGGAGGGAGGCACAAAAAATGAGAGTAGCAAGGCGGCTGGCGGAGGAG
GTAGCCAACGAGCTGGTGAAGGAAGCGAGTGAGGAGTTGGAGGGCATCTT
AAGAGGCTACGCCGAGGACGTCTTTGCCTGGCTCTGAATGCCTTCATCCT
TATCCTTTGCCGCCGCGCCCAACAGGCCCTGGTCACCAGCCTCCACCTCC
TCCAACTCTTCGTTTGCCACCCACTGCCGCCCCCGAGGCTACATACTGGC
GCCTTCTACTAACACCACGAAAAGTGAGCAGAAGCGACATTCCGTCCGCT
ACACTTCGCGATACCTGCAAGAAGCCCAACAACGCGCCATCTCCCGCTCT
GCTCAGCGATTGCATTTGCTTCGACAATCTCGGCTGCACGCGGAGAATGA
GTGGGACAGGGAAGAATCCTCTGCTGCGGCTGCGGCTGCAGCTGCTGCAC
TTGAGGCCAAAAAGGTGGCGAAAAGGGATTCAGTTGGGTCACCTATGCTT
TTTCCATCAATAGCCCTGAAGTGTGGATGCAGTAGTGTCTTGAAGCCCCT
TCCATCTCCTCCCTCTGGCGGCGGTGACAAGTCCAGGCCATGGACCCCGC
CTCCATCTCCCCGCAGCCGTGAGGGTGGCGCGAGCATGACCATCCCTCCT
CTCCCTAATACTACATCCCGCAACACAACGTTCAGCGTCAATTCTCAACG
ATCAGGACATTGTCATCAACATGCGCACGTCAAGACTGCAAAAGGAAGCC
TTGCTGGCGCCACCACTACTGCCAACACAACCACAAGGAGCGGCAGCTGC
AGCGGCAGCAGCAGGACTCCAATTACTCGCATTATCAAGGGTGAATGGAT
CCGACATTCTTCAAGTCAAACTGGAGGGGAAGGACTTTATTGCCTGCTTG
ATGAGGGAGGAGGAACAGTGGGGTTTCCCCAGCGACGCCGACGCCGGGGC
CGAAAAAGAGGAGATGAAGATGGAGGAGGAGGAGCAGGAGGAGCAGGAGA
AGCAGGAGCAGTAGGGGGAAGGACTATGCCCTCGTGTACTCGGGCTTGCT
CGCCCATCGATCCTACAATTGTGGCTTGCATTTTACTGGAGGAGGAGGCC
CAGCTGCAGCAGCAGGAAGAGGAGAAGGAATGGCGGAATAACGAAAGAGT
GCGGGAGGAGGAGGATTCGCGGACGAAAAGGAATACATCAATAGAGGTCT
GGCAGCAAAATGATAAGGGAAGAGTGGAAGGGTTTGAACAGCAGAGTCAG
CAGCAGAGGCATCAGCAGGTCCGCTTTCGGTACTACTACGCCGAGAAGCC
GCACCCTTCGCCGTATCGTCGAGCAGCAGCACCACCACCACCAGCAGATG
CACCAGTGTTGCTTCCACGCAAGCAGCGAAAGCAGCACCAGCAACAGCAG
GGGCGACATAATCATTTTGATAAGGAAGAGGAGGACGAAGACTTGACGCG
CGAGCTGTGCAGTAAACAGGACCTTGGGGAGCGGGAGGAGCAAGAGATGG
GGAGGGAAGAGAGGCGATGTTTCTCGCTTTCCTCGACACCATCGCCATCG
TCTTTTGGCTCCTCCTCCTCCGTCTCCGTCTCGTCCTCCTCCTGGAAAGA
CGTCATCCCTTTGCCGCGTGAAAATCACAATGCGAGGCGAGAGGGTCATG
TTATCCCCTTAGATGTGTCCGAGCGAGAGCAAGCGGATATCGAGGGGAAG
CATGGAGTAAAGTGCACACATATTTGGGGGGAAAAGAAAGGGAGGGAGGC
ACAAAAAATGAGAGTAGCAAGGCG back to top
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