jgi.p|Nanoce1779_2|674112, mRNA_9167 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674112
Unique Name	mRNA_9167
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1811
Alignment location	scaffold_36:116005..117815 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	674198
Track	FilteredModels2
ProteinId	674112

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:116005..117815 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674112	gene_9167	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674112	mRNA_9167-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9167	CDS_9167	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:116005..117815+
coding sequence from alignment at scaffold_36:116005..117815+

mRNA sequence

>mRNA_9167 ID=mRNA_9167|Name=jgi.p|Nanoce1779_2|674112|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp
AGCTGATTCTCTTCGGTGTGCTTGTTATCCTGTTGGCAGAGAAACAATGA
CTGCCAACGCCCTTCGATCATTGTACCAGAGGAGACAACTGCTTTCCCTT
TGTCCGCTTACAGTCATATTCGTAGCTGGCTTATGCTCTTGGGAGCCCCC
TCAAGCTCTCTCATCTCCACCATGCCTTACCACCGCATAAGGGGCAATAG
TTCGGGAGCACAGGCAGCATCCAGCATAGACAGCTGCCAGCCAAGCTGCA
GCAACACACACGGACAATACTCATGGTAAATGCACGGGAAGGAAAGCGTG
TGGCACAAGGCAAGGGCAAGAAGGGAGTCTAAAAGGCTGCAACCATGAAG
AAGACAGGGGTCGCTACCAAGCGCAAGGACCTGAAGCGTAATCGCACTCT
TTCTGACGAGGCAGCCTATACCGAATCCGCCGCCAAGGTCTCGGAATTGG
TCACGCTGGCGCACAATTTTGCTTTCTTGAAGAGCGGCCGAGCAGTTTAC
TGCGCAGTTCCTGAGATCAAGTGCCTCGTCACACTGGGAAACGAGATGGT
GGATGCCGGGGTGATGACGGCGGGGCAATTCTATAAAACCTGCGTGTCCT
CGTCCTACTTTTCCCGCTACCGAAAGACAGATCGCTTTACTTATTTGCAG
AGGCTCGCGGTACGAAAACAATTGAATAGCAAGTTTCTCGACGCGTGGAA
GAGTGAGCAGCCCCTCAATAAAGCGGGAGAGGACTACGCCCAAAAAGTGG
GGCAAGAGGTGCGTGAGAAGGAAGATGAAGAGGAGGATGATATGTTTGAG
AATTTAGCCGAGGCCACGGCTCGCGTTGCCTGGGGGAAGGGGGCTTTGTT
TAAGATGCTAAAGGGGTACGCTATTCATCGTGCGAGCAACAAGGGCTGCC
CCTTTATCAAAGGTTGGATCAAGGCACAAGCCTCCATGGTGGTCACCACC
GTGTTGAAAGGTGAATTCAGCGCTGTAGACGTAAGGAGATGGGTGGCAAA
GGCGAAGGGGAAGGACTCAAGCTTTTATTTTGTGTCTCATTTTGTGTCTT
ATGACGAGGAGATTGTGGGCTTTCTCTATCACGAGAAGGCGGACTTCCAG
GGCAAATATGACGTGGATCTGATCAGAGCGTATGGTGTTGTCGAACGTCT
GAAGAATAAGGGAGTCGGTCTGGCGTTAATTTATTCTTGCTTCAGTGATC
TACCCAGGTCCCCTTACATTTGTGCTGATATTGACAGTGCACACCTAGAG
TCCCTTGCTTGTATCCGTCAGGCGGCACCGGTGTTTGGACGGAAGTTGTT
GGCTCTAGGGCGGGTGGTGATGAGACCCAGTCAGGAATGCATCCTTGAGT
GGAACCGGCACCCGCGGGCCGGGACTTTGGAAAGCAAGGAGTGGTGCTGC
ATGCTCAAGGGTGTCCCTGACTTTGAAGAGCGCGAGAATGAAGAACACTG
GCCGGCCTTGGAGGAGGAGCATTTGCCTGCTACGGAAAGGGATGACAAGC
AAGGAGGAGGGAAGCCAAAAGAGAAGAATATGGTGGTAAAGCAGAAGATC
AAAAATGTGAGGATAATGAAGGCGAAAGAGAAAAATATGGCGATAAAGCA
GGAGAAAGTTTCGAGGAATCTCCGTGGGCGTCCACACAAGAGCACTACAT
TCCTCACGAGGAGCACCCCAAAAAAGAAGAAAGAGGATTAACTAAAGAGA
TTATAAATAAATGGAAGACAAGGAAAAGCGAGACAAAGAACAGCGTGGGC
AAGGAGAAGGAGAGCTAGAGCGAGGTCACGGGTGCCAAGAAAATTAAGGT
TGGAAAGTGAG

protein sequence of jgi.p|Nanoce1779_2|674112

>mRNA_9167-protein ID=mRNA_9167-protein|Name=jgi.p|Nanoce1779_2|674112|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MKKTGVATKRKDLKRNRTLSDEAAYTESAAKVSELVTLAHNFAFLKSGRA
VYCAVPEIKCLVTLGNEMVDAGVMTAGQFYKTCVSSSYFSRYRKTDRFTY
LQRLAVRKQLNSKFLDAWKSEQPLNKAGEDYAQKVGQEVREKEDEEEDDM
FENLAEATARVAWGKGALFKMLKGYAIHRASNKGCPFIKGWIKAQASMVV
TTVLKGEFSAVDVRRWVAKAKGKDSSFYFVSHFVSYDEEIVGFLYHEKAD
FQGKYDVDLIRAYGVVERLKNKGVGLALIYSCFSDLPRSPYICADIDSAH
LESLACIRQAAPVFGRKLLALGRVVMRPSQECILEWNRHPRAGTLESKEW
CCMLKGVPDFEERENEEHWPALEEEHLPATERDDKQGGGKPKEKNMVVKQ
KIKNVRIMKAKEKNMAIKQEKVSRNLRGRPHKSTTFLTRSTPKKKKED*

mRNA from alignment at scaffold_36:116005..117815+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9167 ID=mRNA_9167|Name=jgi.p|Nanoce1779_2|674112|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp|location=Sequence derived from alignment at scaffold_36:116005..117815+ (Nannochloropsis oceanica)
AGCTGATTCTCTTCGGTGTGCTTGTTATCCTGTTGGCAGAGAAACAATGA
CTGCCAACGCCCTTCGATCATTGTACCAGAGGAGACAACTGCTTTCCCTT
TGTCCGCTTACAGTCATATTCGTAGCTGGCTTATGCTCTTGGGAGCCCCC
TCAAGCTCTCTCATCTCCACCATGCCTTACCACCGCATAAGGGGCAATAG
TTCGGGAGCACAGGCAGCATCCAGCATAGACAGCTGCCAGCCAAGCTGCA
GCAACACACACGGACAATACTCATGGTAAATGCACGGGAAGGAAAGCGTG
TGGCACAAGGCAAGGGCAAGAAGGGAGTCTAAAAGGCTGCAACCATGAAG
AAGACAGGGGTCGCTACCAAGCGCAAGGACCTGAAGCGTAATCGCACTCT
TTCTGACGAGGCAGCCTATACCGAATCCGCCGCCAAGGTCTCGGAATTGG
TCACGCTGGCGCACAATTTTGCTTTCTTGAAGAGCGGCCGAGCAGTTTAC
TGCGCAGTTCCTGAGATCAAGTGCCTCGTCACACTGGGAAACGAGATGGT
GGATGCCGGGGTGATGACGGCGGGGCAATTCTATAAAACCTGCGTGTCCT
CGTCCTACTTTTCCCGCTACCGAAAGACAGATCGCTTTACTTATTTGCAG
AGGCTCGCGGTACGAAAACAATTGAATAGCAAGTTTCTCGACGCGTGGAA
GAGTGAGCAGCCCCTCAATAAAGCGGGAGAGGACTACGCCCAAAAAGTGG
GGCAAGAGGTGCGTGAGAAGGAAGATGAAGAGGAGGATGATATGTTTGAG
AATTTAGCCGAGGCCACGGCTCGCGTTGCCTGGGGGAAGGGGGCTTTGTT
TAAGATGCTAAAGGGGTACGCTATTCATCGTGCGAGCAACAAGGGCTGCC
CCTTTATCAAAGGTTGGATCAAGGCACAAGCCTCCATGGTGGTCACCACC
GTGTTGAAAGGTGAATTCAGCGCTGTAGACGTAAGGAGATGGGTGGCAAA
GGCGAAGGGGAAGGACTCAAGCTTTTATTTTGTGTCTCATTTTGTGTCTT
ATGACGAGGAGATTGTGGGCTTTCTCTATCACGAGAAGGCGGACTTCCAG
GGCAAATATGACGTGGATCTGATCAGAGCGTATGGTGTTGTCGAACGTCT
GAAGAATAAGGGAGTCGGTCTGGCGTTAATTTATTCTTGCTTCAGTGATC
TACCCAGGTCCCCTTACATTTGTGCTGATATTGACAGTGCACACCTAGAG
TCCCTTGCTTGTATCCGTCAGGCGGCACCGGTGTTTGGACGGAAGTTGTT
GGCTCTAGGGCGGGTGGTGATGAGACCCAGTCAGGAATGCATCCTTGAGT
GGAACCGGCACCCGCGGGCCGGGACTTTGGAAAGCAAGGAGTGGTGCTGC
ATGCTCAAGGGTGTCCCTGACTTTGAAGAGCGCGAGAATGAAGAACACTG
GCCGGCCTTGGAGGAGGAGCATTTGCCTGCTACGGAAAGGGATGACAAGC
AAGGAGGAGGGAAGCCAAAAGAGAAGAATATGGTGGTAAAGCAGAAGATC
AAAAATGTGAGGATAATGAAGGCGAAAGAGAAAAATATGGCGATAAAGCA
GGAGAAAGTTTCGAGGAATCTCCGTGGGCGTCCACACAAGAGCACTACAT
TCCTCACGAGGAGCACCCCAAAAAAGAAGAAAGAGGATTAACTAAAGAGA
TTATAAATAAATGGAAGACAAGGAAAAGCGAGACAAAGAACAGCGTGGGC
AAGGAGAAGGAGAGCTAGAGCGAGGTCACGGGTGCCAAGAAAATTAAGGT
TGGAAAGTGAG

Coding sequence (CDS) from alignment at scaffold_36:116005..117815+

>mRNA_9167 ID=mRNA_9167|Name=jgi.p|Nanoce1779_2|674112|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at scaffold_36:116005..117815+ (Nannochloropsis oceanica)
ATGAAGAAGACAGGGGTCGCTACCAAGCGCAAGGACCTGAAGCGTAATCG
CACTCTTTCTGACGAGGCAGCCTATACCGAATCCGCCGCCAAGGTCTCGG
AATTGGTCACGCTGGCGCACAATTTTGCTTTCTTGAAGAGCGGCCGAGCA
GTTTACTGCGCAGTTCCTGAGATCAAGTGCCTCGTCACACTGGGAAACGA
GATGGTGGATGCCGGGGTGATGACGGCGGGGCAATTCTATAAAACCTGCG
TGTCCTCGTCCTACTTTTCCCGCTACCGAAAGACAGATCGCTTTACTTAT
TTGCAGAGGCTCGCGGTACGAAAACAATTGAATAGCAAGTTTCTCGACGC
GTGGAAGAGTGAGCAGCCCCTCAATAAAGCGGGAGAGGACTACGCCCAAA
AAGTGGGGCAAGAGGTGCGTGAGAAGGAAGATGAAGAGGAGGATGATATG
TTTGAGAATTTAGCCGAGGCCACGGCTCGCGTTGCCTGGGGGAAGGGGGC
TTTGTTTAAGATGCTAAAGGGGTACGCTATTCATCGTGCGAGCAACAAGG
GCTGCCCCTTTATCAAAGGTTGGATCAAGGCACAAGCCTCCATGGTGGTC
ACCACCGTGTTGAAAGGTGAATTCAGCGCTGTAGACGTAAGGAGATGGGT
GGCAAAGGCGAAGGGGAAGGACTCAAGCTTTTATTTTGTGTCTCATTTTG
TGTCTTATGACGAGGAGATTGTGGGCTTTCTCTATCACGAGAAGGCGGAC
TTCCAGGGCAAATATGACGTGGATCTGATCAGAGCGTATGGTGTTGTCGA
ACGTCTGAAGAATAAGGGAGTCGGTCTGGCGTTAATTTATTCTTGCTTCA
GTGATCTACCCAGGTCCCCTTACATTTGTGCTGATATTGACAGTGCACAC
CTAGAGTCCCTTGCTTGTATCCGTCAGGCGGCACCGGTGTTTGGACGGAA
GTTGTTGGCTCTAGGGCGGGTGGTGATGAGACCCAGTCAGGAATGCATCC
TTGAGTGGAACCGGCACCCGCGGGCCGGGACTTTGGAAAGCAAGGAGTGG
TGCTGCATGCTCAAGGGTGTCCCTGACTTTGAAGAGCGCGAGAATGAAGA
ACACTGGCCGGCCTTGGAGGAGGAGCATTTGCCTGCTACGGAAAGGGATG
ACAAGCAAGGAGGAGGGAAGCCAAAAGAGAAGAATATGGTGGTAAAGCAG
AAGATCAAAAATGTGAGGATAATGAAGGCGAAAGAGAAAAATATGGCGAT
AAAGCAGGAGAAAGTTTCGAGGAATCTCCGTGGGCGTCCACACAAGAGCA
CTACATTCCTCACGAGGAGCACCCCAAAAAAGAAGAAAGAGGATTAA

Synonyms

Publications