jgi.p|Nanoce1779_2|606735, mRNA_9166 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606735
Unique NamemRNA_9166
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length516
Alignment locationscaffold_36:114447..115162 +

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Properties
Property NameValue
TranscriptId606821
TrackFilteredModels2
ProteinId606735
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:114447..115162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606735gene_9166Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606735mRNA_9166-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9166CDS_9166Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9166 ID=mRNA_9166|Name=jgi.p|Nanoce1779_2|606735|organism=Nannochloropsis oceanica|type=mRNA|length=516bp
CTTCATGACTGAAGGAATTCTGGTGAGCAGGAGGGAGTGGGCAAGGTGGA
GGGATGGGAGGATAGGAGGGAGGGAAGGAATGCGTTTCTAGAATGTCGAG
GGATTTCTCCGCTTGCCATGAAGAAGAAGATCCCGGTTCCACTCCATTCC
ACTGTCTTCTTCTCCACCTCCCTACATCCCTCCTTCCCTCCCTCTCCCTT
TCCTCAGGCCTACCGCAACCACGCCTGCTTCTCCTTCCTGGCGCCCATCA
TGCGTAATTCTGCCCGTGTGAAGCTCCAGAACATCCACCGAGGCTTCCAG
ATACTGGCGGCTTCCTGTATCGCGCTCGGCATTGCCTTTATCTTTGGCAA
CAAAGTCCGAAAACACCGCACCATCTTTCCAACCTCCATCCATGCCGCGC
TAGGCTTCCTCGTGTGTGCCCTCCTCGTCCTCCAAGTCCTTGCGGGCCTT
GAGAAATTGGACGCTCAGCGCTCCGGGGTGGTAGGACGGGGAGGAGGGAG
GGAGGGAGGGATTCAT
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protein sequence of jgi.p|Nanoce1779_2|606735

>mRNA_9166-protein ID=mRNA_9166-protein|Name=jgi.p|Nanoce1779_2|606735|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MKKKIPVPLHSTVFFSTSLHPSFPPSPFPQAYRNHACFSFLAPIMRNSAR
VKLQNIHRGFQILAASCIALGIAFIFGNKVRKHRTIFPTSIHAALGFLVC
ALLVLQVLAGLEKLDAQRSGVVGRGGGREGGIH
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mRNA from alignment at scaffold_36:114447..115162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9166 ID=mRNA_9166|Name=jgi.p|Nanoce1779_2|606735|organism=Nannochloropsis oceanica|type=mRNA|length=716bp|location=Sequence derived from alignment at scaffold_36:114447..115162+ (Nannochloropsis oceanica)
CTTCATGACTGAAGGAATTCTGGTGAGCAGGAGGGAGTGGGCAAGGTGGA
GGGATGGGAGGATAGGAGGGAGGGAAGGAATGCGTTTCTAGAATGTCGAG
GGATTTCTCCGCTTGCCATGAAGAAGAAGATCCCGGTTCCACTCCATTCC
ACTGTCTTCTTCTCCACCTCCCTACATCCCTCCTTCCCTCCCTCTCCCTT
TCCTCAGGCCTACCGCAACCACGCCTGCTTCTCCTTCCTGGCGCCCATCA
TGCGTAATTCTGCCCGTGTGAAGCTCCAGAACATCCACCGAGGCTTCCAG
ATACTGGCGGCTTCCTGTATCGCGCTCGGCATTGCCTTTATCTTTGGCAA
CAAAGGTCAGTCAGTAAAGCGGGGAGTGCTTGGGGCCTGGGTGGGGGTAA
TTTCCCTCCCTTCCTCCTTGCTTCTAACCCTTTCCATCGTGTCTGTCTTG
TGAAGCTCGTCAAATCGACGACGGCGTCAACCTGCAAGCACCTCTCCGCA
AACTCACATTTCTGTTCCTCTGTCCTCTCCTCCTCTCCCTCCCTCCCGCC
TTCAGTCCGAAAACACCGCACCATCTTTCCAACCTCCATCCATGCCGCGC
TAGGCTTCCTCGTGTGTGCCCTCCTCGTCCTCCAAGTCCTTGCGGGCCTT
GAGAAATTGGACGCTCAGCGCTCCGGGGTGGTAGGACGGGGAGGAGGGAG
GGAGGGAGGGATTCAT
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Coding sequence (CDS) from alignment at scaffold_36:114447..115162+

>mRNA_9166 ID=mRNA_9166|Name=jgi.p|Nanoce1779_2|606735|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_36:114447..115162+ (Nannochloropsis oceanica)
ATGAAGAAGAAGATCCCGGTTCCACTCCATTCCACTGTCTTCTTCTCCAC
CTCCCTACATCCCTCCTTCCCTCCCTCTCCCTTTCCTCAGGCCTACCGCA
ACCACGCCTGCTTCTCCTTCCTGGCGCCCATCATGCGTAATTCTGCCCGT
GTGAAGCTCCAGAACATCCACCGAGGCTTCCAGATACTGGCGGCTTCCTG
TATCGCGCTCGGCATTGCCTTTATCTTTGGCAACAAAGTCCGAAAACACC
GCACCATCTTTCCAACCTCCATCCATGCCGCGCTAGGCTTCCTCGTGTGT
GCCCTCCTCGTCCTCCAAGTCCTTGCGGGCCTTGAGAAATTGGACGCTCA
GCGCTCCGGGGTGGTAGGACGGGGAGGAGGGAGGGAGGGAGGGATTCATA
TGAAGAAGAAGATCCCGGTTCCACTCCATTCCACTGTCTTCTTCTCCACC
TCCCTACATCCCTCCTTCCCTCCCTCTCCCTTTCCTCAGGCCTACCGCAA
CCACGCCTGCTTCTCCTTCCTGGCGCCCATCATGCGTAATTCTGCCCGTG
TGAAGCTCCAGAACATCCACCGAGGCTTCCAGATACTGGCGGCTTCCTGT
ATCGCGCTCGGCATTGCCTTTATCTTTGGCAACAAAGTCCGAAAACACCG
CACCATCTTTCCAACCTCCATCCATGCCGCGCTAGGCTTCCTCGTGTGTG
CCCTCCTCGTCCTCCAAGTCCTTGCGGGCCTTGAGAAATTGGACGCTCAG
CGCTCCGGGGTGGTAGGACGGGGAGGAGGGAGGGAGGGAGGGATTCAT
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Synonyms
Publications