jgi.p|Nanoce1779_2|606730, mRNA_9164 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606730
Unique Name	mRNA_9164
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1941
Alignment location	scaffold_36:110640..112580 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606816
Track	FilteredModels2
ProteinId	606730

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:110640..112580 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606730	gene_9164	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606730	mRNA_9164-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9164	CDS_9164	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:110640..112580+
coding sequence from alignment at scaffold_36:110640..112580+

mRNA sequence

>mRNA_9164 ID=mRNA_9164|Name=jgi.p|Nanoce1779_2|606730|organism=Nannochloropsis oceanica|type=mRNA|length=1941bp
TGCAGCAGCAGCACCACCACCACCACCAACAACAACGGCAGCAGCAGCAA
AAGCTGCAGATGTTGTGGTCTCCACAAAATTCGCAGAAGCATATTTTGAC
ACCCTTCCAGCGACTGGTGCTCCGGCAGCAGCAGCAGCTACATCAAGAGC
CACTCATTTTTCTTCCCTCCAACTGCCCTTCCAAGTTCCAGCAGCAGCGA
CAGCAGGAGGAGGAGCAGTCATCTCCCTTTGTAGCTTTATCAGCAGCATG
TGAAGGGCATTTCTTGGTTGAGAGATCAAAGAGGGAGGAGGAAAGGGGAG
GGGGAGAGCAGGGAAAGGACGGCTCCACGAGCGGCATACAAGAGGGATGG
ATGACCTTCCCTCCCATTCTTCCCGCCATTGCTGCTGCTACGCCTGATCA
CGATACTGCTCTTGCTTCTTCTGCTGTATTTGGTGAAGCGAGAGGAGTGA
AGCGAACACGCATGGAGGGAAGAGGACAGCGGGGAATGATCGGAGAGAAA
GGAAGCGGAGGAAGAGGAGGACGGTCACCAGAAAGGGGCACTGTCCCAAG
AGAAAACCAGTTTCAACTTCACAGTCCAAGTGGTAGTGGCAGCAGTTTGA
GCCGCAGCAGCTTTACTTGCATGAAGGGCCGTGGCACCTGCCATAAATAC
CCGGGTGAAAAGCATGCCAGGCGGGCTCCAAGGGGGCCTCTAGCGTCGCC
GGCCTACCCGACGCCCCTCCTCGCGAGACGTATGGTGCTTGGTGAGAACA
ATCGACTCACACTCCAGGACGAACAATATCGACAGCAGCAGCAGCAACAG
CAGCAGCAGACACATCCTGGATCCTTCCTTTTAAAGAGCAGCAGCACCAG
CACCGTCAGCAGCTTTGGCAGCACCATGAGAGGAGGAGGAGATGAACTTC
TAAATCTTTTAATGGGCTTCGACCGCATCAACGACTCGTCTTCTCATTGT
TGTACTTGTCGTGCTTCTCCTTCCTGTTCTTCTTCCCCTTCATCTTATGC
GTCATCAAGTGGCATGCTTTTTTACCGACGGGAGAACAACCGCTTAACGA
CCATTATTCGATCCCTTGAAGGAAAGCTGTTCACCCTGACTTCTCAACTA
GAGAACCAGCGGCTGCAGCAGGAGGAACAGCGAAAGCAGCAGGAGATTGA
GTCACTTGCAGACGGGTGGTGGTGTCACGAACTGCTTTTCTCCTCCCTTC
CATACTCCCTTCCTTCCTCCCCATCCTCTCTTCTGCCGCGTGATGACGTC
GCGCTGGAAGAGAGCTTGGACCGATTTTTGGTTGAGATGTTGAACGGCTT
CAACGGCGAAGGCATGCTTTGAGAAGAACGTTTATTCCCCATCTCATTTT
CGTCCTCTCTCACTCTCTCCATTTCTCCTCCCTCCCTCTTCCTTCCCTCA
CTGCACGAGGTGAAATCGACTTAGAAAATAGGAGCATGATAAGGAGCATG
ATGAACACTCAATCAAGACGACTACCACCTTGGTAGAGTGAGAGAGTGTG
TATCTGTTTATCTATCTATCTACATTGAAACATGCCAGTAACTTTCCAGC
AACCAAGCGACCAGATGCACGCCTCGATTCCTCATGAAACCAGGCCAAGC
CAAGCCGAGCAACACTAGATAAGGAAACCAACGACCGGAGAAGGCAAGAA
GGAGAGTGGACCTGGTAGAACGCGAATTACATCGTAACTTTATACGTGCA
CAGACAAATACACTCAAACATGACCCCTCATCTCGATGATATGTTGAACA
AAGCACAAAGCAAGACAATAAAAGCTGAACAAGAGAGGAGAGAGAGAAGA
GGAAGCAATGGCCTCTCAATAATAGGTTCACTTTAAAATGTGTGGAAAGT
AAAATATCCCGCTTCACACCTACGACTCCAGCTTTTCAAAAACGACAAAG
ATTCAAAGAAAAGAAGTATGCATGCAGCCAGATGGAAGCCA

protein sequence of jgi.p|Nanoce1779_2|606730

>mRNA_9164-protein ID=mRNA_9164-protein|Name=jgi.p|Nanoce1779_2|606730|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MLWSPQNSQKHILTPFQRLVLRQQQQLHQEPLIFLPSNCPSKFQQQRQQE
EEQSSPFVALSAACEGHFLVERSKREEERGGGEQGKDGSTSGIQEGWMTF
PPILPAIAAATPDHDTALASSAVFGEARGVKRTRMEGRGQRGMIGEKGSG
GRGGRSPERGTVPRENQFQLHSPSGSGSSLSRSSFTCMKGRGTCHKYPGE
KHARRAPRGPLASPAYPTPLLARRMVLGENNRLTLQDEQYRQQQQQQQQQ
THPGSFLLKSSSTSTVSSFGSTMRGGGDELLNLLMGFDRINDSSSHCCTC
RASPSCSSSPSSYASSSGMLFYRRENNRLTTIIRSLEGKLFTLTSQLENQ
RLQQEEQRKQQEIESLADGWWCHELLFSSLPYSLPSSPSSLLPRDDVALE
ESLDRFLVEMLNGFNGEGML*

mRNA from alignment at scaffold_36:110640..112580+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9164 ID=mRNA_9164|Name=jgi.p|Nanoce1779_2|606730|organism=Nannochloropsis oceanica|type=mRNA|length=1941bp|location=Sequence derived from alignment at scaffold_36:110640..112580+ (Nannochloropsis oceanica)
TGCAGCAGCAGCACCACCACCACCACCAACAACAACGGCAGCAGCAGCAA
AAGCTGCAGATGTTGTGGTCTCCACAAAATTCGCAGAAGCATATTTTGAC
ACCCTTCCAGCGACTGGTGCTCCGGCAGCAGCAGCAGCTACATCAAGAGC
CACTCATTTTTCTTCCCTCCAACTGCCCTTCCAAGTTCCAGCAGCAGCGA
CAGCAGGAGGAGGAGCAGTCATCTCCCTTTGTAGCTTTATCAGCAGCATG
TGAAGGGCATTTCTTGGTTGAGAGATCAAAGAGGGAGGAGGAAAGGGGAG
GGGGAGAGCAGGGAAAGGACGGCTCCACGAGCGGCATACAAGAGGGATGG
ATGACCTTCCCTCCCATTCTTCCCGCCATTGCTGCTGCTACGCCTGATCA
CGATACTGCTCTTGCTTCTTCTGCTGTATTTGGTGAAGCGAGAGGAGTGA
AGCGAACACGCATGGAGGGAAGAGGACAGCGGGGAATGATCGGAGAGAAA
GGAAGCGGAGGAAGAGGAGGACGGTCACCAGAAAGGGGCACTGTCCCAAG
AGAAAACCAGTTTCAACTTCACAGTCCAAGTGGTAGTGGCAGCAGTTTGA
GCCGCAGCAGCTTTACTTGCATGAAGGGCCGTGGCACCTGCCATAAATAC
CCGGGTGAAAAGCATGCCAGGCGGGCTCCAAGGGGGCCTCTAGCGTCGCC
GGCCTACCCGACGCCCCTCCTCGCGAGACGTATGGTGCTTGGTGAGAACA
ATCGACTCACACTCCAGGACGAACAATATCGACAGCAGCAGCAGCAACAG
CAGCAGCAGACACATCCTGGATCCTTCCTTTTAAAGAGCAGCAGCACCAG
CACCGTCAGCAGCTTTGGCAGCACCATGAGAGGAGGAGGAGATGAACTTC
TAAATCTTTTAATGGGCTTCGACCGCATCAACGACTCGTCTTCTCATTGT
TGTACTTGTCGTGCTTCTCCTTCCTGTTCTTCTTCCCCTTCATCTTATGC
GTCATCAAGTGGCATGCTTTTTTACCGACGGGAGAACAACCGCTTAACGA
CCATTATTCGATCCCTTGAAGGAAAGCTGTTCACCCTGACTTCTCAACTA
GAGAACCAGCGGCTGCAGCAGGAGGAACAGCGAAAGCAGCAGGAGATTGA
GTCACTTGCAGACGGGTGGTGGTGTCACGAACTGCTTTTCTCCTCCCTTC
CATACTCCCTTCCTTCCTCCCCATCCTCTCTTCTGCCGCGTGATGACGTC
GCGCTGGAAGAGAGCTTGGACCGATTTTTGGTTGAGATGTTGAACGGCTT
CAACGGCGAAGGCATGCTTTGAGAAGAACGTTTATTCCCCATCTCATTTT
CGTCCTCTCTCACTCTCTCCATTTCTCCTCCCTCCCTCTTCCTTCCCTCA
CTGCACGAGGTGAAATCGACTTAGAAAATAGGAGCATGATAAGGAGCATG
ATGAACACTCAATCAAGACGACTACCACCTTGGTAGAGTGAGAGAGTGTG
TATCTGTTTATCTATCTATCTACATTGAAACATGCCAGTAACTTTCCAGC
AACCAAGCGACCAGATGCACGCCTCGATTCCTCATGAAACCAGGCCAAGC
CAAGCCGAGCAACACTAGATAAGGAAACCAACGACCGGAGAAGGCAAGAA
GGAGAGTGGACCTGGTAGAACGCGAATTACATCGTAACTTTATACGTGCA
CAGACAAATACACTCAAACATGACCCCTCATCTCGATGATATGTTGAACA
AAGCACAAAGCAAGACAATAAAAGCTGAACAAGAGAGGAGAGAGAGAAGA
GGAAGCAATGGCCTCTCAATAATAGGTTCACTTTAAAATGTGTGGAAAGT
AAAATATCCCGCTTCACACCTACGACTCCAGCTTTTCAAAAACGACAAAG
ATTCAAAGAAAAGAAGTATGCATGCAGCCAGATGGAAGCCA

Coding sequence (CDS) from alignment at scaffold_36:110640..112580+

>mRNA_9164 ID=mRNA_9164|Name=jgi.p|Nanoce1779_2|606730|organism=Nannochloropsis oceanica|type=CDS|length=1263bp|location=Sequence derived from alignment at scaffold_36:110640..112580+ (Nannochloropsis oceanica)
ATGTTGTGGTCTCCACAAAATTCGCAGAAGCATATTTTGACACCCTTCCA
GCGACTGGTGCTCCGGCAGCAGCAGCAGCTACATCAAGAGCCACTCATTT
TTCTTCCCTCCAACTGCCCTTCCAAGTTCCAGCAGCAGCGACAGCAGGAG
GAGGAGCAGTCATCTCCCTTTGTAGCTTTATCAGCAGCATGTGAAGGGCA
TTTCTTGGTTGAGAGATCAAAGAGGGAGGAGGAAAGGGGAGGGGGAGAGC
AGGGAAAGGACGGCTCCACGAGCGGCATACAAGAGGGATGGATGACCTTC
CCTCCCATTCTTCCCGCCATTGCTGCTGCTACGCCTGATCACGATACTGC
TCTTGCTTCTTCTGCTGTATTTGGTGAAGCGAGAGGAGTGAAGCGAACAC
GCATGGAGGGAAGAGGACAGCGGGGAATGATCGGAGAGAAAGGAAGCGGA
GGAAGAGGAGGACGGTCACCAGAAAGGGGCACTGTCCCAAGAGAAAACCA
GTTTCAACTTCACAGTCCAAGTGGTAGTGGCAGCAGTTTGAGCCGCAGCA
GCTTTACTTGCATGAAGGGCCGTGGCACCTGCCATAAATACCCGGGTGAA
AAGCATGCCAGGCGGGCTCCAAGGGGGCCTCTAGCGTCGCCGGCCTACCC
GACGCCCCTCCTCGCGAGACGTATGGTGCTTGGTGAGAACAATCGACTCA
CACTCCAGGACGAACAATATCGACAGCAGCAGCAGCAACAGCAGCAGCAG
ACACATCCTGGATCCTTCCTTTTAAAGAGCAGCAGCACCAGCACCGTCAG
CAGCTTTGGCAGCACCATGAGAGGAGGAGGAGATGAACTTCTAAATCTTT
TAATGGGCTTCGACCGCATCAACGACTCGTCTTCTCATTGTTGTACTTGT
CGTGCTTCTCCTTCCTGTTCTTCTTCCCCTTCATCTTATGCGTCATCAAG
TGGCATGCTTTTTTACCGACGGGAGAACAACCGCTTAACGACCATTATTC
GATCCCTTGAAGGAAAGCTGTTCACCCTGACTTCTCAACTAGAGAACCAG
CGGCTGCAGCAGGAGGAACAGCGAAAGCAGCAGGAGATTGAGTCACTTGC
AGACGGGTGGTGGTGTCACGAACTGCTTTTCTCCTCCCTTCCATACTCCC
TTCCTTCCTCCCCATCCTCTCTTCTGCCGCGTGATGACGTCGCGCTGGAA
GAGAGCTTGGACCGATTTTTGGTTGAGATGTTGAACGGCTTCAACGGCGA
AGGCATGCTTTGA

Synonyms

Publications