jgi.p|Nanoce1779_2|606728, mRNA_9163 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606728
Unique NamemRNA_9163
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length922
Alignment locationscaffold_36:109864..110785 -

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Properties
Property NameValue
TranscriptId606814
TrackFilteredModels2
ProteinId606728
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:109864..110785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606728gene_9163Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606728mRNA_9163-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9163CDS_9163Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9163 ID=mRNA_9163|Name=jgi.p|Nanoce1779_2|606728|organism=Nannochloropsis oceanica|type=mRNA|length=922bp
TTGATGTAGCTGCTGCTGCTGCCGGAGCACCAGTCGCTGGAAGGGTGTCA
AAATATGCTTCTGCGAATTTTGTGGAGACCACAACATCTGCAGCTTTTGC
TGCTGCTGCCGTTGTTGTTGGTGGTGGTGGTGGTGCTGCTGCTGCACAAG
CTGCTTTCCTTGACGCTGATCTAGCAGCTGCAGCTGGTCCTCCCTAAATT
TTTGTCGCTGCTGCTCGACATCAGCGTGGATGTCTCGTTGCCTTTTCTCG
ACCTCTTCTCTTTCCTGCGGCACTTGGTAATTTGCCTCCACTCTCTTCTG
CTGCCTTTCCTGCTGCTGCCTGTGCAAGTGTTGCTCGTGTTTTCGGAGCA
CCCACTCCTGCTTTGTCGCAGAAAACACTGCTCTACCTTGGTCCTGCTGT
TCCTGCGGCTGTTCCCTCAATGGTGACGGGCCGACAGTCACATCGAGGTG
CAACGGGTCCGACGGGGACGACGAGGACAAGGGCGCCAATAGAGGGAGCA
GCGGCGGCTGTTGTGCTGGATTCTGACACCAGCTACTGGTCAGCATGGCT
GCATTTGTTGATTTGACTCGGAATAGGGGCTGAAACAGCTGCTGCTCGTG
ATGGTGGTGATGGTGGTGATGGTGGTGGTTGAGGGAAGGCGAAGGCATGA
TTTGTTGGCTATCTTCTTGCACCTCATCCCGTTATCCTATCTTACTTGTG
CCCCTGCTTTCAAGAGCTTATTATTGGCAGGTATGCAGGCTGATAGAAAG
GGTAGGAAGGGTAGGAAATCGAGGAGCGATGAAGGAGGCCGAGGAAGACG
TGCTAGGCAGGTGTCGTACTTAGCGGGAGGAAGGAAAAGCATCGTTTGTG
GTCCGTTACGGCTGCATAACTGCCTTACCCAGGCACTACAGCTGCATATA
CCTCAATGAGTGTTCCCTGTTG
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protein sequence of jgi.p|Nanoce1779_2|606728

>mRNA_9163-protein ID=mRNA_9163-protein|Name=jgi.p|Nanoce1779_2|606728|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MVVMVVMVVVEGRRRHDLLAIFLHLIPLSYLTCAPAFKSLLLAGMQADRK
GRKGRKSRSDEGGRGRRARQVSYLAGGRKSIVCGPLRLHNCLTQALQLHI
PQ*
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mRNA from alignment at scaffold_36:109864..110785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9163 ID=mRNA_9163|Name=jgi.p|Nanoce1779_2|606728|organism=Nannochloropsis oceanica|type=mRNA|length=922bp|location=Sequence derived from alignment at scaffold_36:109864..110785- (Nannochloropsis oceanica)
TTGATGTAGCTGCTGCTGCTGCCGGAGCACCAGTCGCTGGAAGGGTGTCA
AAATATGCTTCTGCGAATTTTGTGGAGACCACAACATCTGCAGCTTTTGC
TGCTGCTGCCGTTGTTGTTGGTGGTGGTGGTGGTGCTGCTGCTGCACAAG
CTGCTTTCCTTGACGCTGATCTAGCAGCTGCAGCTGGTCCTCCCTAAATT
TTTGTCGCTGCTGCTCGACATCAGCGTGGATGTCTCGTTGCCTTTTCTCG
ACCTCTTCTCTTTCCTGCGGCACTTGGTAATTTGCCTCCACTCTCTTCTG
CTGCCTTTCCTGCTGCTGCCTGTGCAAGTGTTGCTCGTGTTTTCGGAGCA
CCCACTCCTGCTTTGTCGCAGAAAACACTGCTCTACCTTGGTCCTGCTGT
TCCTGCGGCTGTTCCCTCAATGGTGACGGGCCGACAGTCACATCGAGGTG
CAACGGGTCCGACGGGGACGACGAGGACAAGGGCGCCAATAGAGGGAGCA
GCGGCGGCTGTTGTGCTGGATTCTGACACCAGCTACTGGTCAGCATGGCT
GCATTTGTTGATTTGACTCGGAATAGGGGCTGAAACAGCTGCTGCTCGTG
ATGGTGGTGATGGTGGTGATGGTGGTGGTTGAGGGAAGGCGAAGGCATGA
TTTGTTGGCTATCTTCTTGCACCTCATCCCGTTATCCTATCTTACTTGTG
CCCCTGCTTTCAAGAGCTTATTATTGGCAGGTATGCAGGCTGATAGAAAG
GGTAGGAAGGGTAGGAAATCGAGGAGCGATGAAGGAGGCCGAGGAAGACG
TGCTAGGCAGGTGTCGTACTTAGCGGGAGGAAGGAAAAGCATCGTTTGTG
GTCCGTTACGGCTGCATAACTGCCTTACCCAGGCACTACAGCTGCATATA
CCTCAATGAGTGTTCCCTGTTG
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Coding sequence (CDS) from alignment at scaffold_36:109864..110785-

>mRNA_9163 ID=mRNA_9163|Name=jgi.p|Nanoce1779_2|606728|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_36:109864..110785- (Nannochloropsis oceanica)
ATGGTGGTGATGGTGGTGATGGTGGTGGTTGAGGGAAGGCGAAGGCATGA
TTTGTTGGCTATCTTCTTGCACCTCATCCCGTTATCCTATCTTACTTGTG
CCCCTGCTTTCAAGAGCTTATTATTGGCAGGTATGCAGGCTGATAGAAAG
GGTAGGAAGGGTAGGAAATCGAGGAGCGATGAAGGAGGCCGAGGAAGACG
TGCTAGGCAGGTGTCGTACTTAGCGGGAGGAAGGAAAAGCATCGTTTGTG
GTCCGTTACGGCTGCATAACTGCCTTACCCAGGCACTACAGCTGCATATA
CCTCAATGA
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Synonyms
Publications