jgi.p|Nanoce1779_2|606697, mRNA_9156 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606697
Unique NamemRNA_9156
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length657
Alignment locationscaffold_36:86488..87144 -

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Properties
Property NameValue
TranscriptId606783
TrackFilteredModels2
ProteinId606697
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:86488..87144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606697gene_9156Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606697mRNA_9156-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9156CDS_9156Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9156 ID=mRNA_9156|Name=jgi.p|Nanoce1779_2|606697|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
CCCTACATTATTTCCAGTGCAATGAGCCGCAGTGTCCCATCCCATTCCGC
CAATAATGTATCATCATCCGAGCCGCCCCCTTCTGCCTTTCCTCCCTCCC
TCCCTCCCTCCGCTTTCCGCCTTGAGTCCTTTGCCAGCATCGCCAGTGGC
AGCACCAATACTCCACATTGCTGCGTCCACGGTCAAGTAGTTCTCGATGG
TTTGGGGACCAAAAAGGTGAGAGAGAAGGCCAAGGTGGACATGGTGTGTG
TGATGGGAGGGCATATGGCCTTGTCTTTGACCGTGAGGACAACTGGTGGT
GGTGCTGCTGATGATGATGACACTTCTGCTATCGCCACTGCGCGTTCCTC
TCCAACCCCTTCTTCGCCTCCTCCTCCGACTACTTTATCGAGTGCTGATT
GTGGTAGGAGCGCGAAAAATACCATCACGCTCTTGCTGGGCTTCATTGCT
CGTGGCCCTGAAGAACAGGAGGAGGACGAAGAGGAGGAGGAGGAGGAAGG
GGAGGAGGGAGAAGAGGAGGGAGGGAGGGAGAAAAAAGCCGATACGTCTG
AAGAGGAAGAGGAGTATGACGACGAAGAGCACGTAAGAGGAGTCTGGAGA
AGAAAGAGAAGAAAAGGAAAGGGGAAGGGCATTAGCAGCAGCAGCAGCAG
CAGCAGC
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protein sequence of jgi.p|Nanoce1779_2|606697

>mRNA_9156-protein ID=mRNA_9156-protein|Name=jgi.p|Nanoce1779_2|606697|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MSRSVPSHSANNVSSSEPPPSAFPPSLPPSAFRLESFASIASGSTNTPHC
CVHGQVVLDGLGTKKVREKAKVDMVCVMGGHMALSLTVRTTGGGAADDDD
TSAIATARSSPTPSSPPPPTTLSSADCGRSAKNTITLLLGFIARGPEEQE
EDEEEEEEEGEEGEEEGGREKKADTS
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mRNA from alignment at scaffold_36:86488..87144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9156 ID=mRNA_9156|Name=jgi.p|Nanoce1779_2|606697|organism=Nannochloropsis oceanica|type=mRNA|length=657bp|location=Sequence derived from alignment at scaffold_36:86488..87144- (Nannochloropsis oceanica)
CCCTACATTATTTCCAGTGCAATGAGCCGCAGTGTCCCATCCCATTCCGC
CAATAATGTATCATCATCCGAGCCGCCCCCTTCTGCCTTTCCTCCCTCCC
TCCCTCCCTCCGCTTTCCGCCTTGAGTCCTTTGCCAGCATCGCCAGTGGC
AGCACCAATACTCCACATTGCTGCGTCCACGGTCAAGTAGTTCTCGATGG
TTTGGGGACCAAAAAGGTGAGAGAGAAGGCCAAGGTGGACATGGTGTGTG
TGATGGGAGGGCATATGGCCTTGTCTTTGACCGTGAGGACAACTGGTGGT
GGTGCTGCTGATGATGATGACACTTCTGCTATCGCCACTGCGCGTTCCTC
TCCAACCCCTTCTTCGCCTCCTCCTCCGACTACTTTATCGAGTGCTGATT
GTGGTAGGAGCGCGAAAAATACCATCACGCTCTTGCTGGGCTTCATTGCT
CGTGGCCCTGAAGAACAGGAGGAGGACGAAGAGGAGGAGGAGGAGGAAGG
GGAGGAGGGAGAAGAGGAGGGAGGGAGGGAGAAAAAAGCCGATACGTCTG
AAGAGGAAGAGGAGTATGACGACGAAGAGCACGTAAGAGGAGTCTGGAGA
AGAAAGAGAAGAAAAGGAAAGGGGAAGGGCATTAGCAGCAGCAGCAGCAG
CAGCAGC
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Coding sequence (CDS) from alignment at scaffold_36:86488..87144-

>mRNA_9156 ID=mRNA_9156|Name=jgi.p|Nanoce1779_2|606697|organism=Nannochloropsis oceanica|type=CDS|length=530bp|location=Sequence derived from alignment at scaffold_36:86488..87144- (Nannochloropsis oceanica)
ATGAGCCGCAGTGTCCCATCCCATTCCGCCAATAATGTATCATCATCCGA
GCCGCCCCCTTCTGCCTTTCCTCCCTCCCTCCCTCCCTCCGCTTTCCGCC
TTGAGTCCTTTGCCAGCATCGCCAGTGGCAGCACCAATACTCCACATTGC
TGCGTCCACGGTCAAGTAGTTCTCGATGGTTTGGGGACCAAAAAGGTGAG
AGAGAAGGCCAAGGTGGACATGGTGTGTGTGATGGGAGGGCATATGGCCT
TGTCTTTGACCGTGAGGACAACTGGTGGTGGTGCTGCTGATGATGATGAC
ACTTCTGCTATCGCCACTGCGCGTTCCTCTCCAACCCCTTCTTCGCCTCC
TCCTCCGACTACTTTATCGAGTGCTGATTGTGGTAGGAGCGCGAAAAATA
CCATCACGCTCTTGCTGGGCTTCATTGCTCGTGGCCCTGAAGAACAGGAG
GAGGACGAAGAGGAGGAGGAGGAGGAAGGGGAGGAGGGAGAAGAGGAGGG
AGGGAGGGAGAAAAAAGCCGATACGTCTGA
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Synonyms
Publications