jgi.p|Nanoce1779_2|606684, mRNA_9152 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606684
Unique NamemRNA_9152
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length491
Alignment locationscaffold_36:73476..73966 -

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Properties
Property NameValue
TranscriptId606770
TrackFilteredModels2
ProteinId606684
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:73476..73966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606684gene_9152Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9152CDS_9152Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606684mRNA_9152-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9152 ID=mRNA_9152|Name=jgi.p|Nanoce1779_2|606684|organism=Nannochloropsis oceanica|type=mRNA|length=491bp
ATGTGTATGTCTGATTTATTGTTCTTTGCTTTTCATGTACATTTTTATTC
ATTCATTTTTGATCTATATATTATTCATTTGTTTTGGATTTATATTTTAT
TTTTATTCATCAAATATATATATCATCAAATATATATATATATTTGCATG
TATATATGCATTCAATGCATGTGTGTATGTATCTATGTATGTGTATATAC
ATGCTATATACTTATTTTACAGCTCTTCTACCTTCTCTACTTCCACATGT
CTTGGTCAGCCGATTCCCCAAATACAAGCACCCCCTCCCCCTCCCTCCCT
CCTTCCCTCCCTCCCCAGGTGCAACTCGACACCCTCTCCTTCCTGCTCTT
TCCCCTCTGTTTTTCTACCGGGCTATTCCCCGAGGCGATGCAGCAGCTCT
CCGACCTCCTCTCCTTTCATTCCTCCGCTCAGAAAGAAGGGGAAGACCAC
CTTGCCAAGTCTCTGGCCAGGTACACCCCTCCCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|606684

>mRNA_9152-protein ID=mRNA_9152-protein|Name=jgi.p|Nanoce1779_2|606684|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MCMSDLLFFAFHVHFYSFIFDLYIIHLFWIYILFLFIKYIYHQIYIYICM
YICIQCMCVCIYVCVYTCYILILQLFYLLYFHMSWSADSPNTSTPSPSLP
PSLPPQVQLDTLSFLLFPLCFSTGLFPEAMQQLSDLLSFHSSAQKEGEDH
LAKSLARYTPPSL
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mRNA from alignment at scaffold_36:73476..73966-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9152 ID=mRNA_9152|Name=jgi.p|Nanoce1779_2|606684|organism=Nannochloropsis oceanica|type=mRNA|length=491bp|location=Sequence derived from alignment at scaffold_36:73476..73966- (Nannochloropsis oceanica)
ATGTGTATGTCTGATTTATTGTTCTTTGCTTTTCATGTACATTTTTATTC
ATTCATTTTTGATCTATATATTATTCATTTGTTTTGGATTTATATTTTAT
TTTTATTCATCAAATATATATATCATCAAATATATATATATATTTGCATG
TATATATGCATTCAATGCATGTGTGTATGTATCTATGTATGTGTATATAC
ATGCTATATACTTATTTTACAGCTCTTCTACCTTCTCTACTTCCACATGT
CTTGGTCAGCCGATTCCCCAAATACAAGCACCCCCTCCCCCTCCCTCCCT
CCTTCCCTCCCTCCCCAGGTGCAACTCGACACCCTCTCCTTCCTGCTCTT
TCCCCTCTGTTTTTCTACCGGGCTATTCCCCGAGGCGATGCAGCAGCTCT
CCGACCTCCTCTCCTTTCATTCCTCCGCTCAGAAAGAAGGGGAAGACCAC
CTTGCCAAGTCTCTGGCCAGGTACACCCCTCCCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_36:73476..73966-

>mRNA_9152 ID=mRNA_9152|Name=jgi.p|Nanoce1779_2|606684|organism=Nannochloropsis oceanica|type=CDS|length=491bp|location=Sequence derived from alignment at scaffold_36:73476..73966- (Nannochloropsis oceanica)
ATGTGTATGTCTGATTTATTGTTCTTTGCTTTTCATGTACATTTTTATTC
ATTCATTTTTGATCTATATATTATTCATTTGTTTTGGATTTATATTTTAT
TTTTATTCATCAAATATATATATCATCAAATATATATATATATTTGCATG
TATATATGCATTCAATGCATGTGTGTATGTATCTATGTATGTGTATATAC
ATGCTATATACTTATTTTACAGCTCTTCTACCTTCTCTACTTCCACATGT
CTTGGTCAGCCGATTCCCCAAATACAAGCACCCCCTCCCCCTCCCTCCCT
CCTTCCCTCCCTCCCCAGGTGCAACTCGACACCCTCTCCTTCCTGCTCTT
TCCCCTCTGTTTTTCTACCGGGCTATTCCCCGAGGCGATGCAGCAGCTCT
CCGACCTCCTCTCCTTTCATTCCTCCGCTCAGAAAGAAGGGGAAGACCAC
CTTGCCAAGTCTCTGGCCAGGTACACCCCTCCCTCCCTCCC
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Synonyms
Publications