jgi.p|Nanoce1779_2|273593, mRNA_9151 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|273593
Unique NamemRNA_9151
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length613
Alignment locationscaffold_36:69474..70516 -

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Properties
Property NameValue
TranscriptId273679
TrackFilteredModels2
ProteinId273593
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:69474..70516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|273593gene_9151Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|273593mRNA_9151-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9151CDS_9151Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9151 ID=mRNA_9151|Name=jgi.p|Nanoce1779_2|273593|organism=Nannochloropsis oceanica|type=mRNA|length=613bp
TCAAAGGGAGCCACAGAGCCGTCTCAGCATGTAGTACAGCGATATTATTG
TACATGTTGAAATACCCTCCAATACTCGAGACCCTTGAATTTTCCCTCGC
CGTGAATGACGAGATTTTACGCCATGGGGATGACTTTTATAATAAGTCTA
TTCTTGATGAGCATTTTTTTATCAACGAAACTATACTTGGCATCACGCAC
ATCACATCTTTACGATGACAACGTTGTCGATTTACGCAACAGCTCCCGAT
TCAAAGAGCCAAGCACAGCCTTTGTCACATTCATTATCCCTTCGAAGGGA
CGGGATTCTATTGGTCAAGCCGTCCAATCCCTCTTCAACCAAACCAGTAA
TACATGGAAAGCTGTGATCATTTTCGATGGCAAGCAGATAAATTTAACCT
CAACAGTATCGGCTTACTTATCTGATCCGAGAATCACATACTACACCATT
CAAAAGTTGGCATCATCAAACCATGCAGAATCATGACATGTTCAAAAGGG
ATCGTGTGGGAATAAGTTTTGCAATTAAGAGGCAACTGTTTGAAAGCGGC
CTATGGTTTGAGCCTTCACAAACAGAAGATTTTGACTTGTTGAAGCGCAT
ATTCGAATCGGAT
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protein sequence of jgi.p|Nanoce1779_2|273593

>mRNA_9151-protein ID=mRNA_9151-protein|Name=jgi.p|Nanoce1779_2|273593|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MTRFYAMGMTFIISLFLMSIFLSTKLYLASRTSHLYDDNVVDLRNSSRFK
EPSTAFVTFIIPSKGRDSIGQAVQSLFNQTSNTWKAVIIFDGKQINLTST
VSAYLSDPRITYYTIQKLASSNHAES*
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mRNA from alignment at scaffold_36:69474..70516-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9151 ID=mRNA_9151|Name=jgi.p|Nanoce1779_2|273593|organism=Nannochloropsis oceanica|type=mRNA|length=1043bp|location=Sequence derived from alignment at scaffold_36:69474..70516- (Nannochloropsis oceanica)
TCAAAGGGAGCCACAGAGCCGTCTCAGCATGTAGTACAGCGATATTATTG
TACATGTTGAAATGTAATGTTTGTTAAAATGTAACTTACTGTCACCTTTT
CAAATTGAAGCTCGTACCTAATTCAAGGACTATTTTCCTACTACCATTTC
GATTTCAGAAGATAATAAATAGCAACTATCTCAGTGTTTTCTATGCCTCA
TAACGCGTATAGACCCTCCAATACTCGAGACCCTTGAATTTTCCCTCGCC
GTGAATGACGAGATTTTACGCCATGGGGATGACTTTTATAATAAGGTATG
AATAAAACACTGAAGTAAGGATCGTTACAGAGAAGGCTTTCTAAATCATT
TCCAATGTCAACAACACAAATCACTCCCACAGTCTATTCTTGATGAGCAT
TTTTTTATCAACGAAACTATACTTGGCATCACGCACATCACATCTTTACG
ATGACAACGTTGTCGATTTACGCAACAGCTCCCGATTCAAAGAGCCAAGC
ACAGCCTTTGTCACATTCATTATCCCTTCGAAGGGACGGGATTCTATTGG
TCAAGCCGTCCAATCCCTCTTCAACCAAACCAGTAATACATGGAAAGCTG
TGATCATTTTCGATGGCAAGCAGATAAATTTAACCTCAACAGTATCGGCT
TACTTATCTGATCCGAGAATCACATACTACACCATTCAAAAGTTGGCATC
ATCAAACCATGCAGGTACTCTTCGAAATTATGGAATGAGCAGGGTCGAAT
GCTCAGAATGGTTTGCATTCCTCGATGATGATGACGTTCTGGCACCCGAG
TATGTTGCTCGACTTAGGGAGGAAGCCGAAGTCAGTACACTTGTTCAAAC
TGTCATATTCCGGATGAGTGTCTCAAACCCATATCTACCACCAATATTAC
CTCCTAAGAATCATGACATGTTCAAAAGGGATCGTGTGGGAATAAGTTTT
GCAATTAAGAGGCAACTGTTTGAAAGCGGCCTATGGTTTGAGCCTTCACA
AACAGAAGATTTTGACTTGTTGAAGCGCATATTCGAATCGGAT
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Coding sequence (CDS) from alignment at scaffold_36:69474..70516-

>mRNA_9151 ID=mRNA_9151|Name=jgi.p|Nanoce1779_2|273593|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_36:69474..70516- (Nannochloropsis oceanica)
AATCATGATCTATTCTTGATGAGCATTTTTTTATCAACGAAACTATACTT
GGCATCACGCACATCACATCTTTACGATGACAACGTTGTCGATTTACGCA
ACAGCTCCCGATTCAAAGAGCCAAGCACAGCCTTTGTCACATTCATTATC
CCTTCGAAGGGACGGGATTCTATTGGTCAAGCCGTCCAATCCCTCTTCAA
CCAAACCAGTAATACATGGAAAGCTGTGATCATTTTCGATGGCAAGCAGA
TAAATTTAACCTCAACAGTATCGGCTTACTTATCTGATCCGAGAATCACA
TACTACACCATTCAAAAGTTGGCATCATCAAACCATGCAGATGACGAGAT
TTTACGCCATGGGGATGACTTTTATAATAAGAATCATGATCTATTCTTGA
TGAGCATTTTTTTATCAACGAAACTATACTTGGCATCACGCACATCACAT
CTTTACGATGACAACGTTGTCGATTTACGCAACAGCTCCCGATTCAAAGA
GCCAAGCACAGCCTTTGTCACATTCATTATCCCTTCGAAGGGACGGGATT
CTATTGGTCAAGCCGTCCAATCCCTCTTCAACCAAACCAGTAATACATGG
AAAGCTGTGATCATTTTCGATGGCAAGCAGATAAATTTAACCTCAACAGT
ATCGGCTTACTTATCTGATCCGAGAATCACATACTACACCATTCAAAAGT
TGGCATCATCAAACCATGCAGATGACGAGATTTTACGCCATGGGGATGAC
TTTTATAATAAGAATCATGATCTATTCTTGATGAGCATTTTTTTATCAAC
GAAACTATACTTGGCATCACGCACATCACATCTTTACGATGACAACGTTG
TCGATTTACGCAACAGCTCCCGATTCAAAGAGCCAAGCACAGCCTTTGTC
ACATTCATTATCCCTTCGAAGGGACGGGATTCTATTGGTCAAGCCGTCCA
ATCCCTCTTCAACCAAACCAGTAATACATGGAAAGCTGTGATCATTTTCG
ATGGCAAGCAGATAAATTTAACCTCAACAGTATCGGCTTACTTATCTGAT
CCGAGAATCACATACTACACCATTCAAAAGTTGGCATCATCAAACCATGC
AGATGACGAGATTTTACGCCATGGGGATGACTTTTATAATAAG
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Synonyms
Publications