jgi.p|Nanoce1779_2|569180, mRNA_9150 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|569180
Unique NamemRNA_9150
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length387
Alignment locationscaffold_36:67699..68414 -

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Properties
Property NameValue
TranscriptId569266
TrackFilteredModels2
ProteinId569180
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:67699..68414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569180gene_9150Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569180mRNA_9150-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9150CDS_9150Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9150 ID=mRNA_9150|Name=jgi.p|Nanoce1779_2|569180|organism=Nannochloropsis oceanica|type=mRNA|length=387bp
ATGACGAGTGAGTATGCGGTAGGCCTCCAGGTCGTTGACGGGGTGCTAGG
GATCGCTAGCTTTACCGCGTGGCCGTCCATCACCTCGAGAGATATCCAGC
GTGTCACGGGCGAGCGAGCAGCAGACATCAAACTAGCAGCGGCGGAGATC
AAGCGTATCGAGGGCGAGCGAGCGGCAGACATCAGACTGGCAGCGGCGCA
GATCAAGCGTATTGAGAGCGAGCGAAAATTGTCGGAGAAGCGTTGGAGGG
CGGAGGTGGAGAAGTACAAGCATGACTTGCAGTTGAAGCATACCGAAGAC
TGCAAACCGTACCAGGCCGCAAAGGAGCAGGCAAACAAAGAGAGGGGAGG
AACAGGAGGGCGGGAAAAAGAAGAGGGGACAAACTAG
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protein sequence of jgi.p|Nanoce1779_2|569180

>mRNA_9150-protein ID=mRNA_9150-protein|Name=jgi.p|Nanoce1779_2|569180|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MTSEYAVGLQVVDGVLGIASFTAWPSITSRDIQRVTGERAADIKLAAAEI
KRIEGERAADIRLAAAQIKRIESERKLSEKRWRAEVEKYKHDLQLKHTED
CKPYQAAKEQANKERGGTGGREKEEGTN*
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mRNA from alignment at scaffold_36:67699..68414-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9150 ID=mRNA_9150|Name=jgi.p|Nanoce1779_2|569180|organism=Nannochloropsis oceanica|type=mRNA|length=716bp|location=Sequence derived from alignment at scaffold_36:67699..68414- (Nannochloropsis oceanica)
ATGACGAGTGTGGGCACCATTTTAAATTGCGTTTTAGAGAAGGGGATGAG GGCGTGATTCGATAAATAGAGCGAAATGATAAAACGACATACTACTACAG TCACTCAAAGCCTTAAGCGGCACAATAATAATCATCAACATTACAATTCC TCCGAGGATATCACGTCGTGTCAGAATTAACGTTGCTCGGGCCCATGAGC TAGAGGCCTAGGTTCATAAAGTGCAAGAGACATTTGCCGTCACCCCCTTA GTATATACATCAAAGGAAGGAAATCAGATCCAAAGTATAATGAAGCAAGG CAAGCCATTTAAGGAATGATCCTTATTTATCTCCCCAGGAGTATGCGGTA GGCCTCCAGGTCGTTGACGGGGTGCTAGGGATCGCTAGCTTTACCGCGTG GCCGTCCATCACCTCGAGAGATATCCAGCGTGTCACGGGCGAGCGAGCAG CAGACATCAAACTAGCAGCGGCGGAGATCAAGCGTATCGAGGGCGAGCGA GCGGCAGACATCAGACTGGCAGCGGCGCAGATCAAGCGTATTGAGAGCGA GCGAAAATTGTCGGAGAAGCGTTGGAGGGCGGAGGTGGAGAAGTACAAGC ATGACTTGCAGTTGAAGCATACCGAAGACTGCAAACCGTACCAGGCCGCA AAGGAGCAGGCAAACAAAGAGAGGGGAGGAACAGGAGGGCGGGAAAAAGA AGAGGGGACAAACTAG
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Coding sequence (CDS) from alignment at scaffold_36:67699..68414-

>mRNA_9150 ID=mRNA_9150|Name=jgi.p|Nanoce1779_2|569180|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_36:67699..68414- (Nannochloropsis oceanica)
GAGTATGCGGTAGGCCTCCAGGTCGTTGACGGGGTGCTAGGGATCGCTAG
CTTTACCGCGTGGCCGTCCATCACCTCGAGAGATATCCAGCGTGTCACGG
GCGAGCGAGCAGCAGACATCAAACTAGCAGCGGCGGAGATCAAGCGTATC
GAGGGCGAGCGAGCGGCAGACATCAGACTGGCAGCGGCGCAGATCAAGCG
TATTGAGAGCGAGCGAAAATTGTCGGAGAAGCGTTGGAGGGCGGAGGTGG
AGAAGTACAAGCATGACTTGCAGTTGAAGCATACCGAAGACTGCAAACCG
TACCAGGCCGCAAAGGAGCAGGCAAACAAAGAGAGGGGAGGAACAGGAGG
GCGGGAAAAAGAAGAGGGGACAAACTAGATGACGAGTGAGTATGCGGTAG
GCCTCCAGGTCGTTGACGGGGTGCTAGGGATCGCTAGCTTTACCGCGTGG
CCGTCCATCACCTCGAGAGATATCCAGCGTGTCACGGGCGAGCGAGCAGC
AGACATCAAACTAGCAGCGGCGGAGATCAAGCGTATCGAGGGCGAGCGAG
CGGCAGACATCAGACTGGCAGCGGCGCAGATCAAGCGTATTGAGAGCGAG
CGAAAATTGTCGGAGAAGCGTTGGAGGGCGGAGGTGGAGAAGTACAAGCA
TGACTTGCAGTTGAAGCATACCGAAGACTGCAAACCGTACCAGGCCGCAA
AGGAGCAGGCAAACAAAGAGAGGGGAGGAACAGGAGGGCGGGAAAAAGAA
GAGGGGACAAACTAGATGACGAGT
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Synonyms
Publications