jgi.p|Nanoce1779_2|146283, mRNA_915 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|146283
Unique NamemRNA_915
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1074
Alignment locationscaffold_2:738463..739536 +

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Properties
Property NameValue
TranscriptId146369
TrackFilteredModels2
ProteinId146283
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:738463..739536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|146283gene_915Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|146283mRNA_915-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_915CDS_915Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_915 ID=mRNA_915|Name=jgi.p|Nanoce1779_2|146283|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp
GGGGGGTGAAAAGGAATGAAGGGGCATAGAGAGGGTTGGGGAGAAACGAC
GGTAACAATAAGTGAAGGCTGCAGTATGGTCAGACAAGAGGAGGCTAGGG
TACGCAAAGACAATTATTGTGGAGAGACATCAATTCGGTCAAGAACCGCC
TGTTGAGCGCTATTATGGTTGTCCAGAATAACTAGTACCACCTAGGTACG
AGCTTATAAAACTTTAGTCGGAGGCGGTCGGTCGGGGCTTACTTAGTGCT
TGAGATAAGATTTTCCACATCAATTGGAAAGCATGTAGAGTACGTTTAAT
GCTAAATCCGCGTCTCACTGGAAATGAAAAAACATATTGTGCAGTGCATA
GTATCCTTAGGAAAGATTATGAACTACTGAACTCTCACCGTTCGCGTAAC
TGTCTACTACGATCAGCAGGGCCTGTGATGCCTTGTCACGACATTGATCA
GTGTCGGCCTGCTGTCGGCTGTCGCATCGCATCATCGCTCAGCACGCACC
TTATACACAATGGTGTTACATTACCAAGGACACAGGACTGTTGCGTTTCA
TCGCACTCTCTCTTGCTCCTCGCCTGGACAGAGCCTTCTGCGCCCCAAGG
AAGCAACCCCGACCATCATACAATCATGGACCGTCAAAAGTTTGAGACAA
TGTTCCCCTCCCTTGTGGCGCACTACCCCACAGTACGGAGCAAGAGTTAT
TATAAGGTCCCGGGACGACGCTCGGGTCCGGGTACAGCACCCATACTTTT
AGAGGGCGGGGCAGATTTGACAGCAAGCATTGGTTCGAAAGAGGATTTTT
GGGTCGCTCTGGATGTGCTGCTGGATAAAAGCCTTGGGCCCGGCGATGCT
TTACCTGTCCGGCAGGCATTCGTTGATGTGTACAAAAAGCATTTAAGCAG
GTTGAACATAGAGCAAATAGAAGAGTTGGCAAACAGTGTGTAACACGATA
AAGGAAAGATAGAAAATGTATCAAATGCACGTATCACACTTTTGATTATA
ATTTGAACGAATGAAAAATAGAATATAATACGCCAAGATCACTCCCTTTA
CCTCTTCCTCGGTGAATGGCCTAC
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protein sequence of jgi.p|Nanoce1779_2|146283

>mRNA_915-protein ID=mRNA_915-protein|Name=jgi.p|Nanoce1779_2|146283|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MLNPRLTGNEKTYCAVHSILRKDYELLNSHRSRNCLLRSAGPVMPCHDID
QCRPAVGCRIASSLSTHLIHNGVTLPRTQDCCVSSHSLLLLAWTEPSAPQ
GSNPDHHTIMDRQKFETMFPSLVAHYPTVRSKSYYKVPGRRSGPGTAPIL
LEGGADLTASIGSKEDFWVALDVLLDKSLGPGDALPVRQAFVDVYKKHLS
RLNIEQIEELANSV*
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mRNA from alignment at scaffold_2:738463..739536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_915 ID=mRNA_915|Name=jgi.p|Nanoce1779_2|146283|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp|location=Sequence derived from alignment at scaffold_2:738463..739536+ (Nannochloropsis oceanica)
GGGGGGTGAAAAGGAATGAAGGGGCATAGAGAGGGTTGGGGAGAAACGAC
GGTAACAATAAGTGAAGGCTGCAGTATGGTCAGACAAGAGGAGGCTAGGG
TACGCAAAGACAATTATTGTGGAGAGACATCAATTCGGTCAAGAACCGCC
TGTTGAGCGCTATTATGGTTGTCCAGAATAACTAGTACCACCTAGGTACG
AGCTTATAAAACTTTAGTCGGAGGCGGTCGGTCGGGGCTTACTTAGTGCT
TGAGATAAGATTTTCCACATCAATTGGAAAGCATGTAGAGTACGTTTAAT
GCTAAATCCGCGTCTCACTGGAAATGAAAAAACATATTGTGCAGTGCATA
GTATCCTTAGGAAAGATTATGAACTACTGAACTCTCACCGTTCGCGTAAC
TGTCTACTACGATCAGCAGGGCCTGTGATGCCTTGTCACGACATTGATCA
GTGTCGGCCTGCTGTCGGCTGTCGCATCGCATCATCGCTCAGCACGCACC
TTATACACAATGGTGTTACATTACCAAGGACACAGGACTGTTGCGTTTCA
TCGCACTCTCTCTTGCTCCTCGCCTGGACAGAGCCTTCTGCGCCCCAAGG
AAGCAACCCCGACCATCATACAATCATGGACCGTCAAAAGTTTGAGACAA
TGTTCCCCTCCCTTGTGGCGCACTACCCCACAGTACGGAGCAAGAGTTAT
TATAAGGTCCCGGGACGACGCTCGGGTCCGGGTACAGCACCCATACTTTT
AGAGGGCGGGGCAGATTTGACAGCAAGCATTGGTTCGAAAGAGGATTTTT
GGGTCGCTCTGGATGTGCTGCTGGATAAAAGCCTTGGGCCCGGCGATGCT
TTACCTGTCCGGCAGGCATTCGTTGATGTGTACAAAAAGCATTTAAGCAG
GTTGAACATAGAGCAAATAGAAGAGTTGGCAAACAGTGTGTAACACGATA
AAGGAAAGATAGAAAATGTATCAAATGCACGTATCACACTTTTGATTATA
ATTTGAACGAATGAAAAATAGAATATAATACGCCAAGATCACTCCCTTTA
CCTCTTCCTCGGTGAATGGCCTAC
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Coding sequence (CDS) from alignment at scaffold_2:738463..739536+

>mRNA_915 ID=mRNA_915|Name=jgi.p|Nanoce1779_2|146283|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_2:738463..739536+ (Nannochloropsis oceanica)
ATGCTAAATCCGCGTCTCACTGGAAATGAAAAAACATATTGTGCAGTGCA
TAGTATCCTTAGGAAAGATTATGAACTACTGAACTCTCACCGTTCGCGTA
ACTGTCTACTACGATCAGCAGGGCCTGTGATGCCTTGTCACGACATTGAT
CAGTGTCGGCCTGCTGTCGGCTGTCGCATCGCATCATCGCTCAGCACGCA
CCTTATACACAATGGTGTTACATTACCAAGGACACAGGACTGTTGCGTTT
CATCGCACTCTCTCTTGCTCCTCGCCTGGACAGAGCCTTCTGCGCCCCAA
GGAAGCAACCCCGACCATCATACAATCATGGACCGTCAAAAGTTTGAGAC
AATGTTCCCCTCCCTTGTGGCGCACTACCCCACAGTACGGAGCAAGAGTT
ATTATAAGGTCCCGGGACGACGCTCGGGTCCGGGTACAGCACCCATACTT
TTAGAGGGCGGGGCAGATTTGACAGCAAGCATTGGTTCGAAAGAGGATTT
TTGGGTCGCTCTGGATGTGCTGCTGGATAAAAGCCTTGGGCCCGGCGATG
CTTTACCTGTCCGGCAGGCATTCGTTGATGTGTACAAAAAGCATTTAAGC
AGGTTGAACATAGAGCAAATAGAAGAGTTGGCAAACAGTGTGTAA
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Synonyms
Publications