jgi.p|Nanoce1779_2|606668, mRNA_9149 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606668
Unique NamemRNA_9149
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length720
Alignment locationscaffold_36:65775..67043 +

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Properties
Property NameValue
TranscriptId606754
TrackFilteredModels2
ProteinId606668
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:65775..67043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606668gene_9149Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606668mRNA_9149-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9149CDS_9149Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9149 ID=mRNA_9149|Name=jgi.p|Nanoce1779_2|606668|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
CAAAAGCAGGCAGCCCCGTTGCTTTCCTGTCTCTCTGCCAGCCAGCCCCG
GTCGTCTTCTTCACTTCTTCACCCGCCACTACACGCACAACATGATGAAC
GAAACGCAGCTCGCCGCTGCGGTCTTGGCCTCGATTGGCGTGGAGGACTA
CGACCCCAAAGTCACTGGGTTGCTGGCCGAGTACTTGCGTCGCAATGTGA
ACGACCTACTGACGGAATCATTGGACTACGCCCAGTATGCAAGACGCAAG
CACATTGACATATCAGACGCCCGCCTCGCCGCTCAGGCCAAGGATACCTT
CAGTAGCTCCTCGCCAATCCCTCCACGTGACCGCATGGTGCAAGTCGCCG
CCGTCATCAACAGTCAGAAACTGGAGCCCTTTCCTCCTTCCTTCACGCCC
TCCCTCCCGCCCTTAAGCCAGGCTGCGGGAGACGAGCTCCTTGCCAACGA
CTATGTGGCTGGCACTCCCCGATCCATCTCTTTGCTGTCCCGGGAGGGGG
AAGGGGTGGAAGGAGGGATGGAGGTGGAGGAGGAAGAGGGTGTAAGGGAG
GGAGGAAGTGGGACAGGGGAGGAGGCGGCGCCGGCCAGGATGGCGAGGAG
GGGGGAGAAGAACTTGAGGTTGATGATGAGTGGTGGAGGAGGAGGAGGAA
GAGGAGGGGGGGAGGACGGGGCAGAGACCGGAGGAGGAGTGGTGTGAGGG
AGGGAAGGTGGGAGTATAGA
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protein sequence of jgi.p|Nanoce1779_2|606668

>mRNA_9149-protein ID=mRNA_9149-protein|Name=jgi.p|Nanoce1779_2|606668|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MMNETQLAAAVLASIGVEDYDPKVTGLLAEYLRRNVNDLLTESLDYAQYA
RRKHIDISDARLAAQAKDTFSSSSPIPPRDRMVQVAAVINSQKLEPFPPS
FTPSLPPLSQAAGDELLANDYVAGTPRSISLLSREGEGVEGGMEVEEEEG
VREGGSGTGEEAAPARMARRGEKNLRLMMSGGGGGGRGGGEDGAETGGGV
V*
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mRNA from alignment at scaffold_36:65775..67043+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9149 ID=mRNA_9149|Name=jgi.p|Nanoce1779_2|606668|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp|location=Sequence derived from alignment at scaffold_36:65775..67043+ (Nannochloropsis oceanica)
CAAAAGCAGGCAGCCCCGTTGCTTTCCTGTCTCTCTGCCAGCCAGCCCCG
GTCGTCTTCTTCACTTCTTCACCCGCCACTACACGCACAACATGATGAAC
GAAACGCAGCTCGCCGCTGCGGTCTTGGCCTCGATTGGCGTGGAGGACTA
CGACCCCAAAGTCACTGGGTTGCTGGCCGAGTACTTGCGTCGTAAGTGCT
GCTGTTGCTGGTGCTTGGAAGACGACAGCAGGGAAAGGGGATAGAGGGGT
AGAGAAGCTGTAGAGGCCACTGCTCTGCATAAATCACGCCCACTGCACCT
TCACCACACTCATCTCACCGATGTATGAATTCCCTTCACACACACGCACT
CCTAGGCAATGTGAACGACCTACTGACGGAATCATTGGACTACGCCCAGT
ATGCAAGACGCAAGGTGAGATACAGACAAGGAGGGTGACAACACGCTAAG
GCACCATTTCGCCCCTCCCTCCCTTCCCTCCCTTCCCCCCTCCCTTCCTT
TCTTTCACTTGGACAAAAATATGTGCTGTCGCCGTCTACAGGGCGAATTT
CTACCGAAAATCGAGGTGCTCTTTCCCAGTCTTTTCACGGCTCCATCTTA
CATTTACTTCCTTCCCTCCCTCTTTCCCTTCCTCCTTTCCACAGCACATT
GACATATCAGACGCCCGCCTCGCCGCTCAGGCCAAGGATACCTTCAGTAG
CTCCTCGCCAATCCCTCCACGTGACGTAAGTCCTTTCCTCCCTCCTCTCT
CCCTTCCTCCTCTCTCTCTTCCTTCCACCCTCCTTCCTTCTCTCCCTCCC
TCTTCGCTTTCTCTACCATGTATCCCTCTTCTCCCTTCCCTCCCTCCTCC
CTCCCTCCTTCTCTCCCAACCCCTCTGCAGCGCATGGTGCAAGTCGCCGC
CGTCATCAACAGTCAGAAACTGGAGCCCTTTCCTCCTTCCTTCACGCCCT
CCCTCCCGCCCTTAAGCCAGGCTGCGGGAGACGAGCTCCTTGCCAACGAC
TATGTGGCTGGCACTCCCCGATCCATCTCTTTGCTGTCCCGGGAGGGGGA
AGGGGTGGAAGGAGGGATGGAGGTGGAGGAGGAAGAGGGTGTAAGGGAGG
GAGGAAGTGGGACAGGGGAGGAGGCGGCGCCGGCCAGGATGGCGAGGAGG
GGGGAGAAGAACTTGAGGTTGATGATGAGTGGTGGAGGAGGAGGAGGAAG
AGGAGGGGGGGAGGACGGGGCAGAGACCGGAGGAGGAGTGGTGTGAGGGA
GGGAAGGTGGGAGTATAGA
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Coding sequence (CDS) from alignment at scaffold_36:65775..67043+

>mRNA_9149 ID=mRNA_9149|Name=jgi.p|Nanoce1779_2|606668|organism=Nannochloropsis oceanica|type=CDS|length=2424bp|location=Sequence derived from alignment at scaffold_36:65775..67043+ (Nannochloropsis oceanica)
ATGATGAACGAAACGCAGCTCGCCGCTGCGGTCTTGGCCTCGATTGGCGT
GGAGGACTACGACCCCAAAGTCACTGGGTTGCTGGCCGAGTACTTGCGTC
GCAATGTGAACGACCTACTGACGGAATCATTGGACTACGCCCAGTATGCA
AGACGCAAGCACATTGACATATCAGACGCCCGCCTCGCCGCTCAGGCCAA
GGATACCTTCAGTAGCTCCTCGCCAATCCCTCCACGTGACCGCATGGTGC
AAGTCGCCGCCGTCATCAACAGTCAGAAACTGGAGCCCTTTCCTCCTTCC
TTCACGCCCTCCCTCCCGCCCTTAAGCCAGGCTGCGGGAGACGAGCTCCT
TGCCAACGACTATGTGGCTGGCACTCCCCGATCCATCTCTTTGCTGTCCC
GGGAGGGGGAAGGGGTGGAAGGAGGGATGGAGGTGGAGGAGGAAGAGGGT
GTAAGGGAGGGAGGAAGTGGGACAGGGGAGGAGGCGGCGCCGGCCAGGAT
GGCGAGGAGGGGGGAGAAGAACTTGAGGTTGATGATGAGTGGTGGAGGAG
GAGGAGGAAGAGGAGGGGGGGAGGACGGGGCAGAGACCGGAGGAGGAGTG
GTGTGAATGATGAACGAAACGCAGCTCGCCGCTGCGGTCTTGGCCTCGAT
TGGCGTGGAGGACTACGACCCCAAAGTCACTGGGTTGCTGGCCGAGTACT
TGCGTCGCAATGTGAACGACCTACTGACGGAATCATTGGACTACGCCCAG
TATGCAAGACGCAAGCACATTGACATATCAGACGCCCGCCTCGCCGCTCA
GGCCAAGGATACCTTCAGTAGCTCCTCGCCAATCCCTCCACGTGACCGCA
TGGTGCAAGTCGCCGCCGTCATCAACAGTCAGAAACTGGAGCCCTTTCCT
CCTTCCTTCACGCCCTCCCTCCCGCCCTTAAGCCAGGCTGCGGGAGACGA
GCTCCTTGCCAACGACTATGTGGCTGGCACTCCCCGATCCATCTCTTTGC
TGTCCCGGGAGGGGGAAGGGGTGGAAGGAGGGATGGAGGTGGAGGAGGAA
GAGGGTGTAAGGGAGGGAGGAAGTGGGACAGGGGAGGAGGCGGCGCCGGC
CAGGATGGCGAGGAGGGGGGAGAAGAACTTGAGGTTGATGATGAGTGGTG
GAGGAGGAGGAGGAAGAGGAGGGGGGGAGGACGGGGCAGAGACCGGAGGA
GGAGTGGTGTGAATGATGAACGAAACGCAGCTCGCCGCTGCGGTCTTGGC
CTCGATTGGCGTGGAGGACTACGACCCCAAAGTCACTGGGTTGCTGGCCG
AGTACTTGCGTCGCAATGTGAACGACCTACTGACGGAATCATTGGACTAC
GCCCAGTATGCAAGACGCAAGCACATTGACATATCAGACGCCCGCCTCGC
CGCTCAGGCCAAGGATACCTTCAGTAGCTCCTCGCCAATCCCTCCACGTG
ACCGCATGGTGCAAGTCGCCGCCGTCATCAACAGTCAGAAACTGGAGCCC
TTTCCTCCTTCCTTCACGCCCTCCCTCCCGCCCTTAAGCCAGGCTGCGGG
AGACGAGCTCCTTGCCAACGACTATGTGGCTGGCACTCCCCGATCCATCT
CTTTGCTGTCCCGGGAGGGGGAAGGGGTGGAAGGAGGGATGGAGGTGGAG
GAGGAAGAGGGTGTAAGGGAGGGAGGAAGTGGGACAGGGGAGGAGGCGGC
GCCGGCCAGGATGGCGAGGAGGGGGGAGAAGAACTTGAGGTTGATGATGA
GTGGTGGAGGAGGAGGAGGAAGAGGAGGGGGGGAGGACGGGGCAGAGACC
GGAGGAGGAGTGGTGTGAATGATGAACGAAACGCAGCTCGCCGCTGCGGT
CTTGGCCTCGATTGGCGTGGAGGACTACGACCCCAAAGTCACTGGGTTGC
TGGCCGAGTACTTGCGTCGCAATGTGAACGACCTACTGACGGAATCATTG
GACTACGCCCAGTATGCAAGACGCAAGCACATTGACATATCAGACGCCCG
CCTCGCCGCTCAGGCCAAGGATACCTTCAGTAGCTCCTCGCCAATCCCTC
CACGTGACCGCATGGTGCAAGTCGCCGCCGTCATCAACAGTCAGAAACTG
GAGCCCTTTCCTCCTTCCTTCACGCCCTCCCTCCCGCCCTTAAGCCAGGC
TGCGGGAGACGAGCTCCTTGCCAACGACTATGTGGCTGGCACTCCCCGAT
CCATCTCTTTGCTGTCCCGGGAGGGGGAAGGGGTGGAAGGAGGGATGGAG
GTGGAGGAGGAAGAGGGTGTAAGGGAGGGAGGAAGTGGGACAGGGGAGGA
GGCGGCGCCGGCCAGGATGGCGAGGAGGGGGGAGAAGAACTTGAGGTTGA
TGATGAGTGGTGGAGGAGGAGGAGGAAGAGGAGGGGGGGAGGACGGGGCA
GAGACCGGAGGAGGAGTGGTGTGA
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Synonyms
Publications