jgi.p|Nanoce1779_2|606666, mRNA_9148 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606666
Unique NamemRNA_9148
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length504
Alignment locationscaffold_36:65148..65651 +

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Properties
Property NameValue
TranscriptId606752
TrackFilteredModels2
ProteinId606666
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:65148..65651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606666gene_9148Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606666mRNA_9148-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9148CDS_9148Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9148 ID=mRNA_9148|Name=jgi.p|Nanoce1779_2|606666|organism=Nannochloropsis oceanica|type=mRNA|length=504bp
ATCGAAATATGTCTGCCTGCCTCCCCCCACTCCTCCTTGTCCTCCTCTTC
CTCCTCCTCCTTCTCCTCCCTGTCGGAGCTGGGGCTGCTTCCATTCCAGT
GCCACCTGCAGCTGTTGCTGCTGGGGGGAAGAGAAGAAAAATGACGCTAC
TCCCAATAGTCCCCCTTCCTGCTGGAACTGCGGCTGCCACATCTGCTCCT
CGTCCTCTGGCTGGCCCGGCTGTGAGCGATTGGGAGGTGGGGCGTCTGCC
GGCAGCATGACTTGAGGAAGGTCGTTCAGCTGCTCGTGGTCATCTTCAGG
TATTGTCATGTTGCTTTCTGTGTTGTTTCATGTGCTGTGGCGGTGGCCTG
ACAAGAGGCCGTGTAATCAAGCCGTGGAAAGCGGCCTGAACACGCGGGTG
AAAGGGGGAGGTTGAGGCCGTGAAATGAGGTCGTGAAATGTCTCCGCGAA
ATCACCTGACGGTGTAAGGTAACCATGCATAAACATGACTAACATCAACG
ATGA
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protein sequence of jgi.p|Nanoce1779_2|606666

>mRNA_9148-protein ID=mRNA_9148-protein|Name=jgi.p|Nanoce1779_2|606666|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MSACLPPLLLVLLFLLLLLLPVGAGAASIPVPPAAVAAGGKRRKMTLLPI
VPLPAGTAAATSAPRPLAGPAVSDWEVGRLPAA*
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mRNA from alignment at scaffold_36:65148..65651+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9148 ID=mRNA_9148|Name=jgi.p|Nanoce1779_2|606666|organism=Nannochloropsis oceanica|type=mRNA|length=504bp|location=Sequence derived from alignment at scaffold_36:65148..65651+ (Nannochloropsis oceanica)
ATCGAAATATGTCTGCCTGCCTCCCCCCACTCCTCCTTGTCCTCCTCTTC
CTCCTCCTCCTTCTCCTCCCTGTCGGAGCTGGGGCTGCTTCCATTCCAGT
GCCACCTGCAGCTGTTGCTGCTGGGGGGAAGAGAAGAAAAATGACGCTAC
TCCCAATAGTCCCCCTTCCTGCTGGAACTGCGGCTGCCACATCTGCTCCT
CGTCCTCTGGCTGGCCCGGCTGTGAGCGATTGGGAGGTGGGGCGTCTGCC
GGCAGCATGACTTGAGGAAGGTCGTTCAGCTGCTCGTGGTCATCTTCAGG
TATTGTCATGTTGCTTTCTGTGTTGTTTCATGTGCTGTGGCGGTGGCCTG
ACAAGAGGCCGTGTAATCAAGCCGTGGAAAGCGGCCTGAACACGCGGGTG
AAAGGGGGAGGTTGAGGCCGTGAAATGAGGTCGTGAAATGTCTCCGCGAA
ATCACCTGACGGTGTAAGGTAACCATGCATAAACATGACTAACATCAACG
ATGA
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Coding sequence (CDS) from alignment at scaffold_36:65148..65651+

>mRNA_9148 ID=mRNA_9148|Name=jgi.p|Nanoce1779_2|606666|organism=Nannochloropsis oceanica|type=CDS|length=252bp|location=Sequence derived from alignment at scaffold_36:65148..65651+ (Nannochloropsis oceanica)
ATGTCTGCCTGCCTCCCCCCACTCCTCCTTGTCCTCCTCTTCCTCCTCCT
CCTTCTCCTCCCTGTCGGAGCTGGGGCTGCTTCCATTCCAGTGCCACCTG
CAGCTGTTGCTGCTGGGGGGAAGAGAAGAAAAATGACGCTACTCCCAATA
GTCCCCCTTCCTGCTGGAACTGCGGCTGCCACATCTGCTCCTCGTCCTCT
GGCTGGCCCGGCTGTGAGCGATTGGGAGGTGGGGCGTCTGCCGGCAGCAT
GA
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Synonyms
Publications