jgi.p|Nanoce1779_2|606664, mRNA_9147 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606664
Unique NamemRNA_9147
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length749
Alignment locationscaffold_36:64510..65258 -

Link to JBrowse

Properties
Property NameValue
TranscriptId606750
TrackFilteredModels2
ProteinId606664
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:64510..65258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606664gene_9147Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606664mRNA_9147-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9147CDS_9147Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9147 ID=mRNA_9147|Name=jgi.p|Nanoce1779_2|606664|organism=Nannochloropsis oceanica|type=mRNA|length=749bp
CTGCAGGTGGCACTGGAATGGAAGCAGCCCCAGCTCCGACAGGGAGGAGA
AGGAGGAGGAGGAAGAGGAGGACAAGGAGGAGTGGGGGGAGGCAGGCAGA
CATATTTCGATGTTTATGTTCCTGCAGTTGCTGCTGGTGGTAACATGGAT
CCGCACCCACTTCTACAGGAACGAGGGGAAGGAGGAGGAGGGAAGAGTGG
GGGAGAGGGAGGAGGAGGGCTGTTTACTTGTACTCCCACCATGCAGCAGC
ACTATTGTGACACCATTGTAACCATGTAAAAACCGGGGGAGGACGTGAAA
GCGATGTCGTTGGAAGAGCTCTCGACGTTTGTGGCCGCGTGCGTCGTCAA
ATATCTCTTAGCTCTCCCCCCTCCAATTTCTGGCAGAGTACAACCTCGTG
TTTCCCCCTTCATTGGCATGGACGTCTTCACAATATGCACAGTGCCCATC
ATCATGCACGGCCTCTATCCTCCCTCTTTCGGTCGTGCCCATTGGCACAC
TAGGCAGTGCGCATCCTCGCCGCCCCCATCCTGTGGTCTAGCGTGCATAT
TGTGAAGACGTCGATGTGGTGTTGCAGCGGATGTGATTCCGAATAGCTTT
GTTGTACGCTTGGAAACCGACCTGAAACACTCATTCGCCCTCCTTCCCTC
ACATAACAACATGCACTGCTGCTTGCCTTGCTGCTTGCCTTGCTGCTTGC
TGTCACCATCAACCAGGACTACCAGAGGAACAGCTACCAGAGGAACAGC
back to top

protein sequence of jgi.p|Nanoce1779_2|606664

>mRNA_9147-protein ID=mRNA_9147-protein|Name=jgi.p|Nanoce1779_2|606664|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MSLEELSTFVAACVVKYLLALPPPISGRVQPRVSPFIGMDVFTICTVPII
MHGLYPPSFGRAHWHTRQCASSPPPSCGLACIL*
back to top

mRNA from alignment at scaffold_36:64510..65258-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9147 ID=mRNA_9147|Name=jgi.p|Nanoce1779_2|606664|organism=Nannochloropsis oceanica|type=mRNA|length=749bp|location=Sequence derived from alignment at scaffold_36:64510..65258- (Nannochloropsis oceanica)
CTGCAGGTGGCACTGGAATGGAAGCAGCCCCAGCTCCGACAGGGAGGAGA
AGGAGGAGGAGGAAGAGGAGGACAAGGAGGAGTGGGGGGAGGCAGGCAGA
CATATTTCGATGTTTATGTTCCTGCAGTTGCTGCTGGTGGTAACATGGAT
CCGCACCCACTTCTACAGGAACGAGGGGAAGGAGGAGGAGGGAAGAGTGG
GGGAGAGGGAGGAGGAGGGCTGTTTACTTGTACTCCCACCATGCAGCAGC
ACTATTGTGACACCATTGTAACCATGTAAAAACCGGGGGAGGACGTGAAA
GCGATGTCGTTGGAAGAGCTCTCGACGTTTGTGGCCGCGTGCGTCGTCAA
ATATCTCTTAGCTCTCCCCCCTCCAATTTCTGGCAGAGTACAACCTCGTG
TTTCCCCCTTCATTGGCATGGACGTCTTCACAATATGCACAGTGCCCATC
ATCATGCACGGCCTCTATCCTCCCTCTTTCGGTCGTGCCCATTGGCACAC
TAGGCAGTGCGCATCCTCGCCGCCCCCATCCTGTGGTCTAGCGTGCATAT
TGTGAAGACGTCGATGTGGTGTTGCAGCGGATGTGATTCCGAATAGCTTT
GTTGTACGCTTGGAAACCGACCTGAAACACTCATTCGCCCTCCTTCCCTC
ACATAACAACATGCACTGCTGCTTGCCTTGCTGCTTGCCTTGCTGCTTGC
TGTCACCATCAACCAGGACTACCAGAGGAACAGCTACCAGAGGAACAGC
back to top

Coding sequence (CDS) from alignment at scaffold_36:64510..65258-

>mRNA_9147 ID=mRNA_9147|Name=jgi.p|Nanoce1779_2|606664|organism=Nannochloropsis oceanica|type=CDS|length=252bp|location=Sequence derived from alignment at scaffold_36:64510..65258- (Nannochloropsis oceanica)
ATGTCGTTGGAAGAGCTCTCGACGTTTGTGGCCGCGTGCGTCGTCAAATA
TCTCTTAGCTCTCCCCCCTCCAATTTCTGGCAGAGTACAACCTCGTGTTT
CCCCCTTCATTGGCATGGACGTCTTCACAATATGCACAGTGCCCATCATC
ATGCACGGCCTCTATCCTCCCTCTTTCGGTCGTGCCCATTGGCACACTAG
GCAGTGCGCATCCTCGCCGCCCCCATCCTGTGGTCTAGCGTGCATATTGT
GA
back to top
Synonyms
Publications