jgi.p|Nanoce1779_2|606662, mRNA_9146 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606662
Unique NamemRNA_9146
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length572
Alignment locationscaffold_36:63595..64166 +

Link to JBrowse

Properties
Property NameValue
TranscriptId606748
TrackFilteredModels2
ProteinId606662
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:63595..64166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606662gene_9146Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606662mRNA_9146-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9146CDS_9146Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9146 ID=mRNA_9146|Name=jgi.p|Nanoce1779_2|606662|organism=Nannochloropsis oceanica|type=mRNA|length=572bp
ATTGTATGATGAGCACGTACATCGAAGCAAAATGGAGAAACGAAGAAATC
ACCAGGGTCACATGTGAGGAGCCCTCCGTTTGGCATTTGGCATTTTTCTT
GTGTCAAGTCCCCACCTCCTCCTTATATCCCCATCACTGTCTTTGAATGT
GTCTTTCACATATATTTTATACAGCTACGCAGCGTCTGAAAAGCTAGTTT
GTCCCCTCTTCTTTTTCCCGCCCTCCTGTTCCTCCCCTCTCTTTGTTTGC
CTGCTCCTTTGCGGCCTGGTACGGTTTGCAGTCTTCGGTATGCTTCAACT
GCAAGTCATGCTTGTACTTCTCCACCTCCGCCCTCCAACACTCCTCCGAC
AATTTTCGCTCGCTCTCAATACGCTTGATCTCCGCCCTCCAATGATTCTC
CGCAAACCTTCGCTCGCCCTCGATACGCTTGATCTCCACCGCTTGCTCGC
CCTCGATACGCCTGATGTCGCTCTGGTCAATGTGATGGACGGCCACGGCG
GTAAAGCTAGCGACCCCTAGCACCCCGCCAAGGACCTGAAAGGCAATCGC
ATACTCCTTCCCAGACCCCCCT
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protein sequence of jgi.p|Nanoce1779_2|606662

>mRNA_9146-protein ID=mRNA_9146-protein|Name=jgi.p|Nanoce1779_2|606662|organism=Nannochloropsis oceanica|type=polypeptide|length=77bp
MLQLQVMLVLLHLRPPTLLRQFSLALNTLDLRPPMILRKPSLALDTLDLH
RLLALDTPDVALVNVMDGHGGKASDP*
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mRNA from alignment at scaffold_36:63595..64166+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9146 ID=mRNA_9146|Name=jgi.p|Nanoce1779_2|606662|organism=Nannochloropsis oceanica|type=mRNA|length=572bp|location=Sequence derived from alignment at scaffold_36:63595..64166+ (Nannochloropsis oceanica)
ATTGTATGATGAGCACGTACATCGAAGCAAAATGGAGAAACGAAGAAATC
ACCAGGGTCACATGTGAGGAGCCCTCCGTTTGGCATTTGGCATTTTTCTT
GTGTCAAGTCCCCACCTCCTCCTTATATCCCCATCACTGTCTTTGAATGT
GTCTTTCACATATATTTTATACAGCTACGCAGCGTCTGAAAAGCTAGTTT
GTCCCCTCTTCTTTTTCCCGCCCTCCTGTTCCTCCCCTCTCTTTGTTTGC
CTGCTCCTTTGCGGCCTGGTACGGTTTGCAGTCTTCGGTATGCTTCAACT
GCAAGTCATGCTTGTACTTCTCCACCTCCGCCCTCCAACACTCCTCCGAC
AATTTTCGCTCGCTCTCAATACGCTTGATCTCCGCCCTCCAATGATTCTC
CGCAAACCTTCGCTCGCCCTCGATACGCTTGATCTCCACCGCTTGCTCGC
CCTCGATACGCCTGATGTCGCTCTGGTCAATGTGATGGACGGCCACGGCG
GTAAAGCTAGCGACCCCTAGCACCCCGCCAAGGACCTGAAAGGCAATCGC
ATACTCCTTCCCAGACCCCCCT
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Coding sequence (CDS) from alignment at scaffold_36:63595..64166+

>mRNA_9146 ID=mRNA_9146|Name=jgi.p|Nanoce1779_2|606662|organism=Nannochloropsis oceanica|type=CDS|length=231bp|location=Sequence derived from alignment at scaffold_36:63595..64166+ (Nannochloropsis oceanica)
ATGCTTCAACTGCAAGTCATGCTTGTACTTCTCCACCTCCGCCCTCCAAC
ACTCCTCCGACAATTTTCGCTCGCTCTCAATACGCTTGATCTCCGCCCTC
CAATGATTCTCCGCAAACCTTCGCTCGCCCTCGATACGCTTGATCTCCAC
CGCTTGCTCGCCCTCGATACGCCTGATGTCGCTCTGGTCAATGTGATGGA
CGGCCACGGCGGTAAAGCTAGCGACCCCTAG
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Synonyms
Publications