jgi.p|Nanoce1779_2|606634, mRNA_9138 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606634
Unique NamemRNA_9138
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length626
Alignment locationscaffold_36:39222..39954 +

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Properties
Property NameValue
TranscriptId606720
TrackFilteredModels2
ProteinId606634
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:39222..39954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606634gene_9138Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606634mRNA_9138-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9138CDS_9138Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9138 ID=mRNA_9138|Name=jgi.p|Nanoce1779_2|606634|organism=Nannochloropsis oceanica|type=mRNA|length=626bp
GAGGTCCCGCGTAAGAATTGCTTCAACTTCCTCAATTAAATCATGCTTTC
TCCATCCTTCCCTACCCAGCATCCCTGCCACCACCCTCGTCGCCTTCCCC
GCCTTCCCTCCCTCCCCCCCAGTTCCAGCCAGAGCCTTTTCCAGCCCATG
AACATTTTCTTTCATCTGACGGGAGAGTGGAGGGAGGTATGCAAGAAGAC
GCTCCGCTTCAGTGATCGTGTGGAGCATGCACCCGGCTGCAATTGCCGTG
GAGGAGGGAGGGAGGAAGGAAGAGATGGGGCCGGTGGTGTTGATGGTGCA
GCTGCTACTGGCTGTGGCTGCTTTTGCGAGGAGAGGAAGACGCTTAGTGA
GATTGGCAAGGGCATGAAGTACTCGCTGGAGCTGTGTGTCGGTGTCGAGG
AAGGCGAGCAGAGCATCCACAGTTGCTTCCTCAAGGGCCCGGACTTGGCG
CTGCTGTTGCTGCTCTTGCTGCTGCTGCTGCCTCATTCTTTCCTCGTCCT
CGTACTGCAGCTCGTCCCCCCTCTGTCGTTTGTCTCCTCTTTACGATAGG
AGCGAGGGGCTTTCCCCCCTGCCGTGGCCGACTTCCTTGTTCTCGTTGTT
GTTGTTGTCGTCGTCGTTATGCCTGT
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protein sequence of jgi.p|Nanoce1779_2|606634

>mRNA_9138-protein ID=mRNA_9138-protein|Name=jgi.p|Nanoce1779_2|606634|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MLSPSFPTQHPCHHPRRLPRLPSLPPSSSQSLFQPMNIFFHLTGEWREVC
KKTLRFSDRVEHAPGCNCRGGGREEGRDGAGGVDGAAATGCGCFCEERKT
LSEIGKGMKYSLELCVGVEEGEQSIHSCFLKGPDLALLLLLLLLLLPHSF
LVLVLQLVPPLSFVSSLR*
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mRNA from alignment at scaffold_36:39222..39954+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9138 ID=mRNA_9138|Name=jgi.p|Nanoce1779_2|606634|organism=Nannochloropsis oceanica|type=mRNA|length=733bp|location=Sequence derived from alignment at scaffold_36:39222..39954+ (Nannochloropsis oceanica)
GAGGTCCCGCGTAAGAATTGCTTCAACTTCCTCAATTAAATCATGCTTTC
TCCATCCTTCCCTACCCAGCATCCCTGCCACCACCCTCGTCGCCTTCCCC
GCCTTCCCTCCCTCCCCCCCAGTTCCAGCCAGAGCCTTTTCCAGCCCATG
AACATTTTCTTTCATCTGACGGGAGAGTGGAGGGAGGTATGCAAGAAGAC
GCTCCGCTTCAGTGATCGTGTGGAGCATGCACCCGGCTGCAATTGCCGTG
GAGGAGGGAGGGAGGAAGGAAGAGATGGGGCCGGTGGTGTTGATGGTGCA
GCTGCTACTGGCTGTGGCTGCTTTTGCGAGGAGAGGAAGACGCTTAGTGA
GATTGGCAAGGGCATGAAGTACTCGCTGGAGCTGTGTGTCGGTGTCGAGG
AAGGCGAGCAGCTGTGAAGGGAGGGAGGAAGGAAAGAGGGAAGGAGTGGG
CAGGAGGTTACATGGAAAAGATAAGGGACAGGGGGAGGGATGCTCTAGTC
CAGACGCTCGCTACTCACAGCATCCACAGTTGCTTCCTCAAGGGCCCGGA
CTTGGCGCTGCTGTTGCTGCTCTTGCTGCTGCTGCTGCCTCATTCTTTCC
TCGTCCTCGTACTGCAGCTCGTCCCCCCTCTGTCGTTTGTCTCCTCTTTA
CGATAGGAGCGAGGGGCTTTCCCCCCTGCCGTGGCCGACTTCCTTGTTCT
CGTTGTTGTTGTTGTCGTCGTCGTTATGCCTGT
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Coding sequence (CDS) from alignment at scaffold_36:39222..39954+

>mRNA_9138 ID=mRNA_9138|Name=jgi.p|Nanoce1779_2|606634|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_36:39222..39954+ (Nannochloropsis oceanica)
ATGCTTTCTCCATCCTTCCCTACCCAGCATCCCTGCCACCACCCTCGTCG
CCTTCCCCGCCTTCCCTCCCTCCCCCCCAGTTCCAGCCAGAGCCTTTTCC
AGCCCATGAACATTTTCTTTCATCTGACGGGAGAGTGGAGGGAGGTATGC
AAGAAGACGCTCCGCTTCAGTGATCGTGTGGAGCATGCACCCGGCTGCAA
TTGCCGTGGAGGAGGGAGGGAGGAAGGAAGAGATGGGGCCGGTGGTGTTG
ATGGTGCAGCTGCTACTGGCTGTGGCTGCTTTTGCGAGGAGAGGAAGACG
CTTAGTGAGATTGGCAAGGGCATGAAGTACTCGCTGGAGCTGTGTGTCGG
TGTCGAGGAAGGCGAGCAGAGCATCCACAGTTGCTTCCTCAAGGGCCCGG
ACTTGGCGCTGCTGTTGCTGCTCTTGCTGCTGCTGCTGCCTCATTCTTTC
CTCGTCCTCGTACTGCAGCTCGTCCCCCCTCTGTCGTTTGTCTCCTCTTT
ACGATAGATGCTTTCTCCATCCTTCCCTACCCAGCATCCCTGCCACCACC
CTCGTCGCCTTCCCCGCCTTCCCTCCCTCCCCCCCAGTTCCAGCCAGAGC
CTTTTCCAGCCCATGAACATTTTCTTTCATCTGACGGGAGAGTGGAGGGA
GGTATGCAAGAAGACGCTCCGCTTCAGTGATCGTGTGGAGCATGCACCCG
GCTGCAATTGCCGTGGAGGAGGGAGGGAGGAAGGAAGAGATGGGGCCGGT
GGTGTTGATGGTGCAGCTGCTACTGGCTGTGGCTGCTTTTGCGAGGAGAG
GAAGACGCTTAGTGAGATTGGCAAGGGCATGAAGTACTCGCTGGAGCTGT
GTGTCGGTGTCGAGGAAGGCGAGCAGAGCATCCACAGTTGCTTCCTCAAG
GGCCCGGACTTGGCGCTGCTGTTGCTGCTCTTGCTGCTGCTGCTGCCTCA
TTCTTTCCTCGTCCTCGTACTGCAGCTCGTCCCCCCTCTGTCGTTTGTCT
CCTCTTTACGATAG
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Synonyms
Publications