jgi.p|Nanoce1779_2|606620, mRNA_9136 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606620
Unique NamemRNA_9136
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1281
Alignment locationscaffold_36:22632..24186 -

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Properties
Property NameValue
TranscriptId606706
TrackFilteredModels2
ProteinId606620
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:22632..24186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606620gene_9136Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606620mRNA_9136-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9136CDS_9136Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9136 ID=mRNA_9136|Name=jgi.p|Nanoce1779_2|606620|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp
ACAGCGCAATCACGGCTAGGACGACGATAGTCACAGTACGGTGAGGGCGG
TAGTGGTGGTGATAGTGGTGGCCAGAGCGAATGGAAGAGATATTTGCTCC
TGAGAGACCTGACGAGGATCCTGTTACTGTCCAAGTGCTTGTCTCGCCCA
TAGCGCCACACATGACAAACAAGGCCTTGAAGACACTGCACACCCTCCTT
CCCACACCCGATGCCAAGCTCGGGCACCTGAAACGCGTCCGCAAAGATCC
TTCCTCCTCGTCCCTCCTCCTCCTGCTCTCCACTCCATCCCTTTACCATG
CCCTTTCCCCCTCTCTCCGCTTCACTCTCGAGAAAGACTTAGACTTAAAA
ATACGAGAGGCCCGAGTCCCGAGGCGACCTTGTAAATCGAGAGAGGAACA
ACAAGAATTATCGCGATTATGGCCGATGACTTACCAAGGGATAGGCGAAG
TAGTCGAGAAGGAGAAAGCGGCTTTGACGAGGTACGGAAGGAGAAGGAGA
GAGAAACATCCATTCCCATTTTCAGTGGGAATGCATCAGTCACTCCGCTT
CCCTTTCGCTCTGCCCTCCCCCACTCTCTCTCTCCCTCCCTCCTCCCCTT
GATTACACAGCCACGAAATTGAGACAGCAGAAAAGCACCTTCGCCATGCA
TTTGTCCTTGCTGCCGCTGTTGCTAAGGAGGAGGAAGAGGACAAGGAGGA
GGAGGAGGATGAAGACGAAGAAGAGGAGAAGGAAGACGACCAGACACTAA
ATTACAGTAGCAGCAGTATGAGGAGGAAAAGTAAAGGAGTGAAAGGGGGA
AGGATAAGAAGGGAGAGGGGAAGGATGAGAGAGGGAAGAGGGGCAGTATT
CGTAAATCCCGAGAATGGCATTGTGATAGCAACAGCCGTTTCGTCAACTG
ACACTCCTACAGCAGCGGTAAGTGGGAAGATGGAGGATAAGGGGAAGGAG
GGGAACGAGGAGGAGGAGGGTACCAGTGATCAGAATTGTTGCCACTGCCA
GCAGCTGCAGGAGCCGCAGCAGCAGGAGCAGGAGCAACGGCAGCAACGGC
AACAGAAGCACAACGGTTTCCAGTTACCTCCTTCTCATCCAAGCTCCTCG
ACTGATGGTTTTTCTACCATCCCTCCCTCCCGCCTTCCCTCTCTTCCTTC
TCACCCCCTTCACCATGTCGTCATGCAATGCATAACGCTTGTGGCTCGTC
TTGTCGCCGGGCGCCAAGACAAGGAGAGAGGGGGGGAGGAACGCGGGGAG
GAAAGTGTAGGAGGGAGGGGTACCGGGCATG
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protein sequence of jgi.p|Nanoce1779_2|606620

>mRNA_9136-protein ID=mRNA_9136-protein|Name=jgi.p|Nanoce1779_2|606620|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MEEIFAPERPDEDPVTVQVLVSPIAPHMTNKALKTLHTLLPTPDAKLGHL
KRVRKDPSSSSLLLLLSTPSLYHALSPSLRFTLEKDLDLKIREARVPRRP
CKSREEQQELSRLWPMTYQGIGEVVEKEKAALTRYGRRRREKHPFPFSVG
MHQSLRFPFALPSPTLSLPPSSP*
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mRNA from alignment at scaffold_36:22632..24186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9136 ID=mRNA_9136|Name=jgi.p|Nanoce1779_2|606620|organism=Nannochloropsis oceanica|type=mRNA|length=1555bp|location=Sequence derived from alignment at scaffold_36:22632..24186- (Nannochloropsis oceanica)
ACAGCGCAATCACGGCTAGGACGACGATAGTCACAGTACGGTGAGGGCGG
TAGTGGTGGTGATAGTGGTGGCCAGAGCGAATGGAAGAGATATTTGCTCC
TGAGAGACCTGACGAGGTGAGTCGCCTCTACAACCTCCCATCCTCCTCCT
CCCTTCCCTCCTTCATCCCTTCACGCATACATGTTTACACGCATATGTGT
TTAGGATCCTGTTACTGTCCAAGTGCTTGTCTCGCCCATAGCGCCACACA
TGACAAACAAGGCCTTGAAGACACTGCACACCCTCCTTCCCACACCCGAT
GCCAAGGTACGTATATACTCACATGCGCTTTCCTCTCCACCAGCCCCCCC
GTTTGCGTTTCTGTTGTCGTTCATTGTCTTTACTTTTCGCAAAATGTCTT
TTCTGGAGCGTGTGTCCTTCCCCCTGGCACCCATCCATCAACACCCTTCC
CTCTTTCCCTCTCTCCCTCCCTCACTCTCCACATTCCCATAGCTCGGGCA
CCTGAAACGCGTCCGCAAAGATCCTTCCTCCTCGTCCCTCCTCCTCCTGC
TCTCCACTCCATCCCTTTACCATGCCCTTTCCCCCTCTCTCCGCTTCACT
CTCGAGAAAGACTTAGACTTAAAAATACGAGAGGCCCGAGTCCCGAGGCG
ACCTTGTAAATCGAGAGAGGAACAACAAGAATTATCGCGATTATGGCCGA
TGACTTACCAAGGGATAGGCGAAGTAGTCGAGAAGGAGAAAGCGGCTTTG
ACGAGGTACGGAAGGAGAAGGAGAGAGAAACATCCATTCCCATTTTCAGT
GGGAATGCATCAGTCACTCCGCTTCCCTTTCGCTCTGCCCTCCCCCACTC
TCTCTCTCCCTCCCTCCTCCCCTTGATTACACAGCCACGAAATTGAGACA
GCAGAAAAGCACCTTCGCCATGCATTTGTCCTTGCTGCCGCTGTTGCTAA
GGAGGAGGAAGAGGACAAGGAGGAGGAGGAGGATGAAGACGAAGAAGAGG
AGAAGGAAGACGACCAGACACTAAATTACAGTAGCAGCAGTATGAGGAGG
AAAAGTAAAGGAGTGAAAGGGGGAAGGATAAGAAGGGAGAGGGGAAGGAT
GAGAGAGGGAAGAGGGGCAGTATTCGTAAATCCCGAGAATGGCATTGTGA
TAGCAACAGCCGTTTCGTCAACTGACACTCCTACAGCAGCGGTAAGTGGG
AAGATGGAGGATAAGGGGAAGGAGGGGAACGAGGAGGAGGAGGGTACCAG
TGATCAGAATTGTTGCCACTGCCAGCAGCTGCAGGAGCCGCAGCAGCAGG
AGCAGGAGCAACGGCAGCAACGGCAACAGAAGCACAACGGTTTCCAGTTA
CCTCCTTCTCATCCAAGCTCCTCGACTGATGGTTTTTCTACCATCCCTCC
CTCCCGCCTTCCCTCTCTTCCTTCTCACCCCCTTCACCATGTCGTCATGC
AATGCATAACGCTTGTGGCTCGTCTTGTCGCCGGGCGCCAAGACAAGGAG
AGAGGGGGGGAGGAACGCGGGGAGGAAAGTGTAGGAGGGAGGGGTACCGG
GCATG
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Coding sequence (CDS) from alignment at scaffold_36:22632..24186-

>mRNA_9136 ID=mRNA_9136|Name=jgi.p|Nanoce1779_2|606620|organism=Nannochloropsis oceanica|type=CDS|length=1566bp|location=Sequence derived from alignment at scaffold_36:22632..24186- (Nannochloropsis oceanica)
CTCGGGCACCTGAAACGCGTCCGCAAAGATCCTTCCTCCTCGTCCCTCCT
CCTCCTGCTCTCCACTCCATCCCTTTACCATGCCCTTTCCCCCTCTCTCC
GCTTCACTCTCGAGAAAGACTTAGACTTAAAAATACGAGAGGCCCGAGTC
CCGAGGCGACCTTGTAAATCGAGAGAGGAACAACAAGAATTATCGCGATT
ATGGCCGATGACTTACCAAGGGATAGGCGAAGTAGTCGAGAAGGAGAAAG
CGGCTTTGACGAGGTACGGAAGGAGAAGGAGAGAGAAACATCCATTCCCA
TTTTCAGTGGGAATGCATCAGTCACTCCGCTTCCCTTTCGCTCTGCCCTC
CCCCACTCTCTCTCTCCCTCCCTCCTCCCCTTGAGATCCTGTTACTGTCC
AAGTGCTTGTCTCGCCCATAGCGCCACACATGACAAACAAGGCCTTGAAG
ACACTGCACACCCTCCTTCCCACACCCGATGCCAAGATGGAAGAGATATT
TGCTCCTGAGAGACCTGACGAGCTCGGGCACCTGAAACGCGTCCGCAAAG
ATCCTTCCTCCTCGTCCCTCCTCCTCCTGCTCTCCACTCCATCCCTTTAC
CATGCCCTTTCCCCCTCTCTCCGCTTCACTCTCGAGAAAGACTTAGACTT
AAAAATACGAGAGGCCCGAGTCCCGAGGCGACCTTGTAAATCGAGAGAGG
AACAACAAGAATTATCGCGATTATGGCCGATGACTTACCAAGGGATAGGC
GAAGTAGTCGAGAAGGAGAAAGCGGCTTTGACGAGGTACGGAAGGAGAAG
GAGAGAGAAACATCCATTCCCATTTTCAGTGGGAATGCATCAGTCACTCC
GCTTCCCTTTCGCTCTGCCCTCCCCCACTCTCTCTCTCCCTCCCTCCTCC
CCTTGAGATCCTGTTACTGTCCAAGTGCTTGTCTCGCCCATAGCGCCACA
CATGACAAACAAGGCCTTGAAGACACTGCACACCCTCCTTCCCACACCCG
ATGCCAAGATGGAAGAGATATTTGCTCCTGAGAGACCTGACGAGCTCGGG
CACCTGAAACGCGTCCGCAAAGATCCTTCCTCCTCGTCCCTCCTCCTCCT
GCTCTCCACTCCATCCCTTTACCATGCCCTTTCCCCCTCTCTCCGCTTCA
CTCTCGAGAAAGACTTAGACTTAAAAATACGAGAGGCCCGAGTCCCGAGG
CGACCTTGTAAATCGAGAGAGGAACAACAAGAATTATCGCGATTATGGCC
GATGACTTACCAAGGGATAGGCGAAGTAGTCGAGAAGGAGAAAGCGGCTT
TGACGAGGTACGGAAGGAGAAGGAGAGAGAAACATCCATTCCCATTTTCA
GTGGGAATGCATCAGTCACTCCGCTTCCCTTTCGCTCTGCCCTCCCCCAC
TCTCTCTCTCCCTCCCTCCTCCCCTTGAGATCCTGTTACTGTCCAAGTGC
TTGTCTCGCCCATAGCGCCACACATGACAAACAAGGCCTTGAAGACACTG
CACACCCTCCTTCCCACACCCGATGCCAAGATGGAAGAGATATTTGCTCC
TGAGAGACCTGACGAG
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Synonyms
Publications