jgi.p|Nanoce1779_2|606617, mRNA_9135 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606617
Unique NamemRNA_9135
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length283
Alignment locationscaffold_36:22148..22430 -

Link to JBrowse

Properties
Property NameValue
TranscriptId606703
TrackFilteredModels2
ProteinId606617
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:22148..22430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606617gene_9135Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606617mRNA_9135-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9135CDS_9135Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9135 ID=mRNA_9135|Name=jgi.p|Nanoce1779_2|606617|organism=Nannochloropsis oceanica|type=mRNA|length=283bp
TCGATGCCTACCTAACTCACGAACCCTGTGTCATGTGCGCCATGGCTTTG
GTGCATTCCCGGGTGCGTCGTGTCTTTTATGGGATCCCGTCGCTGGAGGA
AGGCGCATTGGGCAGTCACTTTGCCGTGCATGCCTTGCCGGGCTTGAACC
ATCGGTATCGGGCTTTTCGCTGGCATTGCAATGATATGAGCAGCACCAAC
AGCAGCAGCAGCAGCAGCAGCAGTGGTTGTTGTAGCTGTAGTAGTACGTG
ATGAATGTTCTGGGTCTAGTTGTGGGGGTATGT
back to top

protein sequence of jgi.p|Nanoce1779_2|606617

>mRNA_9135-protein ID=mRNA_9135-protein|Name=jgi.p|Nanoce1779_2|606617|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MCAMALVHSRVRRVFYGIPSLEEGALGSHFAVHALPGLNHRYRAFRWHCN
DMSSTNSSSSSSSSGCCSCSST*
back to top

mRNA from alignment at scaffold_36:22148..22430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9135 ID=mRNA_9135|Name=jgi.p|Nanoce1779_2|606617|organism=Nannochloropsis oceanica|type=mRNA|length=283bp|location=Sequence derived from alignment at scaffold_36:22148..22430- (Nannochloropsis oceanica)
TCGATGCCTACCTAACTCACGAACCCTGTGTCATGTGCGCCATGGCTTTG
GTGCATTCCCGGGTGCGTCGTGTCTTTTATGGGATCCCGTCGCTGGAGGA
AGGCGCATTGGGCAGTCACTTTGCCGTGCATGCCTTGCCGGGCTTGAACC
ATCGGTATCGGGCTTTTCGCTGGCATTGCAATGATATGAGCAGCACCAAC
AGCAGCAGCAGCAGCAGCAGCAGTGGTTGTTGTAGCTGTAGTAGTACGTG
ATGAATGTTCTGGGTCTAGTTGTGGGGGTATGT
back to top

Coding sequence (CDS) from alignment at scaffold_36:22148..22430-

>mRNA_9135 ID=mRNA_9135|Name=jgi.p|Nanoce1779_2|606617|organism=Nannochloropsis oceanica|type=CDS|length=219bp|location=Sequence derived from alignment at scaffold_36:22148..22430- (Nannochloropsis oceanica)
ATGTGCGCCATGGCTTTGGTGCATTCCCGGGTGCGTCGTGTCTTTTATGG
GATCCCGTCGCTGGAGGAAGGCGCATTGGGCAGTCACTTTGCCGTGCATG
CCTTGCCGGGCTTGAACCATCGGTATCGGGCTTTTCGCTGGCATTGCAAT
GATATGAGCAGCACCAACAGCAGCAGCAGCAGCAGCAGCAGTGGTTGTTG
TAGCTGTAGTAGTACGTGA
back to top
Synonyms
Publications