jgi.p|Nanoce1779_2|606610, mRNA_9133 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606610
Unique Name	mRNA_9133
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	804
Alignment location	scaffold_36:17420..18431 +

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Properties


Property Name	Value
TranscriptId	606696
Track	FilteredModels2
ProteinId	606610

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:17420..18431 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606610	gene_9133	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606610	mRNA_9133-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9133	CDS_9133	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:17420..18431+
coding sequence from alignment at scaffold_36:17420..18431+

mRNA sequence

>mRNA_9133 ID=mRNA_9133|Name=jgi.p|Nanoce1779_2|606610|organism=Nannochloropsis oceanica|type=mRNA|length=804bp
CCTTTCAGATGCCTGGGCAGATGTCCTCATCCCTCTTTCCCTCCTTCCTA
TCCCCCCCTCGTCGTGCACCAATCACCCCAGGGCGTGATGGCATGGGAGG
GGTGATGAGCTGCGGGCAGGGTTCCATTTGGCGCGTGGACGTACTCCGGG
ACGGTGTGACTAGTGACGGGAAACGAGGCGTGGATGCCATGGAGGTACGT
CCTTTATTTATCATACCAAATTTATTCATTCATTTATTTGTTCAAACATG
CATGTTTTTAATCCATTTTATTTATTTCAATCAATTTTTATTTCATTTTA
TTCATTATTTGTTTATTTTTTATTTATTTTTGTTATTTGTATTAAGGCTT
TCCCACTACCCCTCTTTTCTTCGTTTTCTATCCTTTCAAATACTATTCCT
TTTTGAAATGTCTTCTTCTCGTCTCTCCCTCTCGTTCATTATTTTTATTT
ATTTATTCTTACCGACTAATGAACCTTTACACCTGTCAACCCCCCCTGCC
CTACTGTAATGCCTCCTCCAGGTGCGTTCCCTCGTCGGCACAAAGCTCGG
CTACTCCCAGCTATCCCGTATCGAGGACACTATGACCTCCATCGGCATGT
TTTCCCGAGGATTTAAGTCCGTGTATATTAACGAGGAGGACGAGCTCCTG
GGTCGGTGCACGCAAGAACCGGATTCGATGGACTGGCGTATCAAGCAGCT
CTTCCGTTGGCATTACGGTGCCGTTGAATTATTTGGCATGGGCATTTTTA
AACTTCAAGAAGGACGATTCCCCTCCATCTGGCACCGCATCTACGTGTGG
GAGG

protein sequence of jgi.p|Nanoce1779_2|606610

>mRNA_9133-protein ID=mRNA_9133-protein|Name=jgi.p|Nanoce1779_2|606610|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MPGQMSSSLFPSFLSPPRRAPITPGRDGMGGVMSCGQGSIWRVDVLRDGV
TSDGKRGVDAMEVRPLFIIPNLFIHLFVQTCMFLIHFIYFNQFLFHFIHY
LFIFYLFLLFVLRLSHYPSFLRFLSFQILFLFEMSSSRLSLSFIIFIYLF
LPTNEPLHLSTPPALL*

mRNA from alignment at scaffold_36:17420..18431+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9133 ID=mRNA_9133|Name=jgi.p|Nanoce1779_2|606610|organism=Nannochloropsis oceanica|type=mRNA|length=1012bp|location=Sequence derived from alignment at scaffold_36:17420..18431+ (Nannochloropsis oceanica)
CCTTTCAGATGCCTGGGCAGATGTCCTCATCCCTCTTTCCCTCCTTCCTA
TCCCCCCCTCGTCGTGCACCAATCACCCCAGGGCGTGATGGCATGGGAGG
GGTGATGAGCTGCGGGCAGGGTTCCATTTGGCGCGTGGACGTACTCCGGG
ACGGTGTGACTAGTGACGGGAAACGAGGCGTGGATGCCATGGAGGTACGT
CCTTTATTTATCATACCAAATTTATTCATTCATTTATTTGTTCAAACATG
CATGTTTTTAATCCATTTTATTTATTTCAATCAATTTTTATTTCATTTTA
TTCATTATTTGTTTATTTTTTATTTATTTTTGTTATTTGTATTAAGGCTT
TCCCACTACCCCTCTTTTCTTCGTTTTCTATCCTTTCAAATACTATTCCT
TTTTGAAATGTCTTCTTCTCGTCTCTCCCTCTCGTTCATTATTTTTATTT
ATTTATTCTTACCGACTAATGAACCTTTACACCTGTCAACCCCCCCTGCC
CTACTGTAATGCCTCCTCCAGGTGCGTTCCCTCGTCGGCACAAAGCTCGG
CTACTCCCAGCTATCCCGTATCGAGGACACTATGACCTCCATCGGCATGT
TTTCCCGAGGATTTAAGTCCGTGTATATTAACGAGGAGGACGAGCTCCTG
GGTCGGTGCACGCAAGAACCGGATTCGATGGACTGGTATGACGCCTTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCCTCTTTTTATGAAGCCTT
CCTTCCTTCCCCCCTCCCTTCCTCCCCCTTTTTCCTCCCCATCTCGTCCG
CCTCGTCGACTCCTACCAACTTCCCACTGCTTTCCTTCACCTCACGCTCA
CGTTTTCCATCCCCTCCCTCCCTCCCTCCCTCCCTCTACCCAGGCGTATC
AAGCAGCTCTTCCGTTGGCATTACGGTGCCGTTGAATTATTTGGCATGGG
CATTTTTAAACTTCAAGAAGGACGATTCCCCTCCATCTGGCACCGCATCT
ACGTGTGGGAGG

Coding sequence (CDS) from alignment at scaffold_36:17420..18431+

>mRNA_9133 ID=mRNA_9133|Name=jgi.p|Nanoce1779_2|606610|organism=Nannochloropsis oceanica|type=CDS|length=501bp|location=Sequence derived from alignment at scaffold_36:17420..18431+ (Nannochloropsis oceanica)
ATGCCTGGGCAGATGTCCTCATCCCTCTTTCCCTCCTTCCTATCCCCCCC
TCGTCGTGCACCAATCACCCCAGGGCGTGATGGCATGGGAGGGGTGATGA
GCTGCGGGCAGGGTTCCATTTGGCGCGTGGACGTACTCCGGGACGGTGTG
ACTAGTGACGGGAAACGAGGCGTGGATGCCATGGAGGTACGTCCTTTATT
TATCATACCAAATTTATTCATTCATTTATTTGTTCAAACATGCATGTTTT
TAATCCATTTTATTTATTTCAATCAATTTTTATTTCATTTTATTCATTAT
TTGTTTATTTTTTATTTATTTTTGTTATTTGTATTAAGGCTTTCCCACTA
CCCCTCTTTTCTTCGTTTTCTATCCTTTCAAATACTATTCCTTTTTGAAA
TGTCTTCTTCTCGTCTCTCCCTCTCGTTCATTATTTTTATTTATTTATTC
TTACCGACTAATGAACCTTTACACCTGTCAACCCCCCCTGCCCTACTGTA
A

Synonyms

Publications