jgi.p|Nanoce1779_2|606607, mRNA_9132 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606607
Unique NamemRNA_9132
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length999
Alignment locationscaffold_36:11663..14197 -

Link to JBrowse

Properties
Property NameValue
TranscriptId606693
TrackFilteredModels2
ProteinId606607
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:11663..14197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606607gene_9132Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606607mRNA_9132-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9132CDS_9132Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9132 ID=mRNA_9132|Name=jgi.p|Nanoce1779_2|606607|organism=Nannochloropsis oceanica|type=mRNA|length=999bp
GTAGGGACGAAAAGAAGACATGCAAGAAAGAAAAGAATACATACGAGAAG
GGGGAGAAAGGAGGAAGGGAAGGAGGGGAGGAGGAAGGGCAACGACGTAC
CGGGTGCAGCGCCAGTAGATGTACAGGATGCCACAGATGATGTTGATGAC
GGAGACGCCGATGAGGAAATTGCGCGAAGGATGATACTTGAAGTCTTGGG
GGTTCTTGGCCTCCTTGTAGTTGACCGGCGTGCTTGGGCCAGTGGAGTGA
TCGAGCTCCGCCGAGATATCGGGAACGGCATCAAAACCGTTTCCCTCCTG
ATATACGGATTTTGCCGGGTATCCTGCAAACGCCGCTACGCCCTTAGCGT
GGAGGAAATCTCGGTCAGGCATGTCCGCAGGGCCGTGGTTGGTGTGGGTC
TGACGACTGGCCACTCCGTGAAGGAGGTGGGTGATTTGCTTGATGGCATC
CACCGTCTTGGGGTTCGTGGCCCCCTGGCCGAGCTCGCTCATGTCCGAAG
CCGTGGGTGAGGGGATTGACTCTATCTCACTGTCCAAGGGAGAAGACACA
TCGTCTATGTCGTGCATGCTGCTATTGTGATCAAACTTTTGGGAGATCTG
ATTTATTAGATCCCGTGTCTCCTGCGGCATCGAGTCATCGTGCTGCAGCT
GGTTCATTGCCTTAAATATGTCCGACTCATTCATCTGCAGGGCGTCGTCA
TCCTCGTCCCCATCGCGGTCAGTGTTGCTGGTCGGGACGTAGGCTTTCCG
CAAAAAGTTCATCGCCATCGTCCCTCTCGTCCCCTTCCCGTGTTATCGAG
GCACAAGAAAAGGGGTGAGGGTAAAGGAAGGAGGGAGGACGAGGGGGAAA
AGGAGAAGAGGAAAACTGTAGAGCGATTGAGGTGCCTTGGCTGTCTAGCT
GGAAAGCGGGGCGGGGACGGGGCTCGTCGCTTTGCTTTCCTTTCTTGAGG
TCCTACTCACACGTGACCCTCTCCAGGTGGAAAAAAGCTGTCTGTGGTT
back to top

protein sequence of jgi.p|Nanoce1779_2|606607

>mRNA_9132-protein ID=mRNA_9132-protein|Name=jgi.p|Nanoce1779_2|606607|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MILEVLGVLGLLVVDRRAWASGVIELRRDIGNGIKTVSLLIYGFCRVSCK
RRYALSVEEISVRHVRRAVVGVGLTTGHSVKEVGDLLDGIHRLGVRGPLA
ELAHVRSRG*
back to top

mRNA from alignment at scaffold_36:11663..14197-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9132 ID=mRNA_9132|Name=jgi.p|Nanoce1779_2|606607|organism=Nannochloropsis oceanica|type=mRNA|length=2535bp|location=Sequence derived from alignment at scaffold_36:11663..14197- (Nannochloropsis oceanica)
GTAGGGACGAAAAGAAGACATGCAAGAAAGAAAAGAATACATACGAGAAG
GGGGAGAAAGGAGGAAGGGAAGGAGGGGAGGAGGAAGGGCAACGACGTAC
CGGGTGCAGCGCCAGTAGATGTACAGGATGCCACAGATGATGTTGATGAC
GGAGACGCCGATGAGGAAATTGCGCGAAGGATGATACTTGAAGTCTTGGG
GGTTCTTGGCCTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGTA
GGAAGGAAGAGTTGAGTTTTTATGTCACGTTGAAAAAGAGAGAGGAAGGG
AGGAAGGGAGGGAGAAGGAGCTGGAAGGAGGGAAAGAGGGAGGGAGGGCT
TGTGGGCTTGGGCCTACCTCCTTGTAGTTGACCGGCGTGCTTGGGCCAGT
GGAGTGATCGAGCTCCGCCGAGCTGTCAGAAAGAGGAAAGACACGCCGTG
TGTAAGAAATGGATACGTATATATATATATATACACACACACATACATGC
GCATTTGATACACACACGTATATAGGCACACATATATAAACACATCAGTT
GGGAAGGCGTCTTCTTTCTCCTCCTTCCCACTCTCCCGCTTATTTACTCT
CTCTCTCTCCCTTCCTCCCTCTCTTCCTTGCTCCCTCCCTCCCAACGTAC
ATATCGGGAACGGCATCAAAACCGTTTCCCTCCTGATATACGGATTTTGC
CGGGTATCCTGCAAACGCCGCTACGCCCTTAGCGTGGAGGAAATCTCGGT
CAGGCATGTCCGCAGGGCCTGGAGGGTAGAGAGGGAGGAAGAGAGGGAGG
GAAGGGGAGGGAGCAAGGGAGGGAGGGAGGGAGACAGGGAGAGAGAGGAA
TGAGGGATCTGTCTTGACGGGCGGGGGAGGGAGAGAGGGAGGGAGGGAGG
GAGGGAGGGAGGTACCGTGGTTGGTGTGGGTCTGACGACTGGCCACTCCG
TGAAGGAGGTGGGTGATTTGCTTGATGGCATCCACCTGTTCACAAGGAGG
GAAAGGAGGAGGAGGAGATTGAGAAGGAGGAGGAGGAGGAAGAGGAGAAG
CAGCAGCAGCAGCACCAGCAGTTGGAGGGGGGGGAGGAGAAGGGAGAAAT
TCAATGAGAAAGGAGAGCAACAGAGAGTAGCAAGCGCATACTGATTCTCA
CACGCTCATGCCAACATCCTGACCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCTCACCGTCTTGGGGTTCGTGGCCCCCTGGCCGAGCTCGCT
CATGTCCGAAGCCGTGGGTGAGGGGATTGACTCTATCTCACTGTCCAAGG
GAGAAGACACATCGTCTGATTGACGGAGGGAGGTAGCGAGGGAGGGAGGG
AGGGAGGGAAGAAGGGAAATTGGGTGAAAAATGCGAGAATTTAATCTGCC
TGCACGCGTATGCTTTCCTCTCCTTTCTTCCTTCTTTCCCTTCCCTCTCC
CCCTCTCCCTCCTTCCCCCCCTCTCCCCTTCTCAAGGTGGATACGCACAC
GCCCTTTTCCTTCCTCCCTCCCTCCCTCCCTCCTCGGGACGCACCTATGT
CGTGCATGCTGCTATTGTGATCAAACTTTTGGGAGATCTAAAGAAGGGAG
GGAAGGACGGACGAAATGGTGGATTGCGTCAGCAGATGTGATAGATGGAT
GCGTGTAACGGCCGAAAGATATTCGCCTTTGCACTCTTCTTCTTCTTCCT
CCTCCTCCTGCTCCCCTCCCTCCCTCCCCGGCCCTACCGGTCCCACCAGG
CGAAACTCCCTTCCCAAAGCTCATTTACCGCCCTCTCTTCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTACCTCCCTACCTGATTTAT
TAGATCCCGTGTCTCCTGCGGCATCGAGTCATCGTGCTGCAGCTGGTTCA
TTGCCTTAAATATGTCCGACTCATTCATCTGCAGGGCGTCGTCATCCTCG
TCCCTGGAAGGTGGCAAAGACAATGGAGGGAGGCAAGGAGGAAAAAGAGT
ACGAAAGGGTGAGAACGTGTGTGTAGATACATGTGTGTGTGGGTTTGTAT
GCGTGTGTGGCGGCATAATGAGAGGTCTGCTTATTCACTCCCTTCCATCA
CTCCCTCCCTCTTTCCCTCGCTCCCCTCTCATCCCTCCCCTCTCCTCCCC
TCCCTCCCTCCCTCCCTCCCTCGCCCCCTCCCTCTGTCCCATCTCCTCTC
CTCCCCTTTCCTCCCTCCCTCCCTCCTTCCCTCCTCATTACGCACCCATC
GCGGTCAGTGTTGCTGGTCGGGACGTAGGCTTTCCGCAAAAAGTTCATCG
CCATCGTCCCTCTCGTCCCCTTCCCGTGTTATCGAGGCACAAGAAAAGGG
GTGAGGGTAAAGGAAGGAGGGAGGACGAGGGGGAAAAGGAGAAGAGGAAA
ACTGTAGAGCGATTGAGGTGCCTTGGCTGTCTAGCTGGAAAGCGGGGCGG
GGACGGGGCTCGTCGCTTTGCTTTCCTTTCTTGAGGTCCTACTCACACGT
GACCCTCTCCAGGTGGAAAAAAGCTGTCTGTGGTT
back to top

Coding sequence (CDS) from alignment at scaffold_36:11663..14197-

>mRNA_9132 ID=mRNA_9132|Name=jgi.p|Nanoce1779_2|606607|organism=Nannochloropsis oceanica|type=CDS|length=1650bp|location=Sequence derived from alignment at scaffold_36:11663..14197- (Nannochloropsis oceanica)
CGTCTTGGGGTTCGTGGCCCCCTGGCCGAGCTCGCTCATGTCCGAAGCCG
TGGGTGACGTGGTTGGTGTGGGTCTGACGACTGGCCACTCCGTGAAGGAG
GTGGGTGATTTGCTTGATGGCATCCACATATCGGGAACGGCATCAAAACC
GTTTCCCTCCTGATATACGGATTTTGCCGGGTATCCTGCAAACGCCGCTA
CGCCCTTAGCGTGGAGGAAATCTCGGTCAGGCATGTCCGCAGGGCCTCCT
TGTAGTTGACCGGCGTGCTTGGGCCAGTGGAGTGATCGAGCTCCGCCGAG
ATGATACTTGAAGTCTTGGGGGTTCTTGGCCGTCTTGGGGTTCGTGGCCC
CCTGGCCGAGCTCGCTCATGTCCGAAGCCGTGGGTGACGTGGTTGGTGTG
GGTCTGACGACTGGCCACTCCGTGAAGGAGGTGGGTGATTTGCTTGATGG
CATCCACATATCGGGAACGGCATCAAAACCGTTTCCCTCCTGATATACGG
ATTTTGCCGGGTATCCTGCAAACGCCGCTACGCCCTTAGCGTGGAGGAAA
TCTCGGTCAGGCATGTCCGCAGGGCCTCCTTGTAGTTGACCGGCGTGCTT
GGGCCAGTGGAGTGATCGAGCTCCGCCGAGATGATACTTGAAGTCTTGGG
GGTTCTTGGCCGTCTTGGGGTTCGTGGCCCCCTGGCCGAGCTCGCTCATG
TCCGAAGCCGTGGGTGACGTGGTTGGTGTGGGTCTGACGACTGGCCACTC
CGTGAAGGAGGTGGGTGATTTGCTTGATGGCATCCACATATCGGGAACGG
CATCAAAACCGTTTCCCTCCTGATATACGGATTTTGCCGGGTATCCTGCA
AACGCCGCTACGCCCTTAGCGTGGAGGAAATCTCGGTCAGGCATGTCCGC
AGGGCCTCCTTGTAGTTGACCGGCGTGCTTGGGCCAGTGGAGTGATCGAG
CTCCGCCGAGATGATACTTGAAGTCTTGGGGGTTCTTGGCCGTCTTGGGG
TTCGTGGCCCCCTGGCCGAGCTCGCTCATGTCCGAAGCCGTGGGTGACGT
GGTTGGTGTGGGTCTGACGACTGGCCACTCCGTGAAGGAGGTGGGTGATT
TGCTTGATGGCATCCACATATCGGGAACGGCATCAAAACCGTTTCCCTCC
TGATATACGGATTTTGCCGGGTATCCTGCAAACGCCGCTACGCCCTTAGC
GTGGAGGAAATCTCGGTCAGGCATGTCCGCAGGGCCTCCTTGTAGTTGAC
CGGCGTGCTTGGGCCAGTGGAGTGATCGAGCTCCGCCGAGATGATACTTG
AAGTCTTGGGGGTTCTTGGCCGTCTTGGGGTTCGTGGCCCCCTGGCCGAG
CTCGCTCATGTCCGAAGCCGTGGGTGACGTGGTTGGTGTGGGTCTGACGA
CTGGCCACTCCGTGAAGGAGGTGGGTGATTTGCTTGATGGCATCCACATA
TCGGGAACGGCATCAAAACCGTTTCCCTCCTGATATACGGATTTTGCCGG
GTATCCTGCAAACGCCGCTACGCCCTTAGCGTGGAGGAAATCTCGGTCAG
GCATGTCCGCAGGGCCTCCTTGTAGTTGACCGGCGTGCTTGGGCCAGTGG
AGTGATCGAGCTCCGCCGAGATGATACTTGAAGTCTTGGGGGTTCTTGGC
back to top
Synonyms
Publications