jgi.p|Nanoce1779_2|574617, mRNA_912 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574617
Unique Name	mRNA_912
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1616
Alignment location	scaffold_2:732955..734570 +

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Properties


Property Name	Value
TranscriptId	574703
Track	FilteredModels2
ProteinId	574617

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:732955..734570 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574617	gene_912	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574617	mRNA_912-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_912	CDS_912	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:732955..734570+
coding sequence from alignment at scaffold_2:732955..734570+

mRNA sequence

>mRNA_912 ID=mRNA_912|Name=jgi.p|Nanoce1779_2|574617|organism=Nannochloropsis oceanica|type=mRNA|length=1616bp
ACAGGAAGGACACATGTTGCGGCTTACTCGCGCTGTCCCCAAGAACCTGC
TGGCATTGGCCAGCCGTAGTCAGAGCTCCTTGGCCTGCCTTGATGAGGAG
TTCCCTGGATTGCCTGCTTTGAACCCTGCTGTCGGTACGCCGCGTTTGGT
GGAGACAACTACGCTTCCTAGCGGGGTGAAGGTGGTTTCTACGGCATGCG
GGAAGATGTCTTCTGTGGGATTGTCTGTGGCTGCGGGCAGTATGTACGAG
GCTCTCCCAAGTGAGAACGGCGCTGCCTTGTTGCTTAAACATCTTGCCTT
TAAAGGGACCGCGGCACGGTCCTCTTTGCGACTTATGCGCGACCTGGAGA
GCGTGGGTTCGATCCCGTCAGCCAGTGTCGGAAGGGAGGCTGTGGTGTAT
CGCGTCACTTCGCAGCCCGACTTCGCGGAGCAAGCTCTCCAGGCTGTTTT
TGAGACCGCTTTGACGCCAAAGATAACGCCCTACCTCGTCTCGGAGCTGC
AAGTCGCCGCTGCCGCGGACATGGAAGCCTACGCCGCGGATGCACGTCTG
CAGCTGAGCGAGGCCTTGTACGAGGCGGCCTACGGGGAGAACACGCCCTT
AGGCCGGCCCCTATACTTCCCAGGCACGGATGTCACTTCGGGATCCCTCG
CCGCCTATCGCGCCAAAACCTTTGGGTCCGGCTCGCTCACTGTGGTGGGG
GTTGGGGTCGCGCATGCCCAGCTTTCGTCTTGGGCGGCGGGCCTGACGGA
GGGATTAGCTAGGGGCAGCGCCAGGGCTGCGCCTATCTCGGCGTATGTTG
GGGGTGAGGCGCGTCTCAAGGCTTCTTCGGATGCCACTTTTGTGGGCTTG
GCACTGGCAGCACCAAGCAAGGCGGACGCGGGGGCGTTGGGCGTGTTGGC
CGCAGCCTGGCAGGCGGCCTTGCCTGCGGGCGCGTCCGTCTTTACGCTAC
CTGGCCTGGTGGGCGTGACGGGCGTGGCTTCTCCCAGTGCGGCGGGGGCC
TACGTGGATTCGTTACTTCAGGTGCTCAAGAGCACGGGGGAGGACTTTGC
CTTGGCCAAAAAAGCAGCACAAGTAGCGGCCTTGATCAAGCTGGACTGGG
CGCTTTTTGAAGGCCTGGCAGACGGGAGTGCCACAGTTGCTGTTGACGGG
GTTTCCGAGGCGGAAGTCAAGGCTCTTCATGCCAAGATCTGGAAGGGTGG
CCTCAGCATTGCCTCGCTCGGGGATGTGAGCAAGGTGCCCAAGCTCTCCA
GCCTCAAGTAAATGATCGAACGTTGGGAAAGAGGAGAGAGTGAAAGTTTT
TGGCTGCATGTAGGTGTTGGTGCTTTTGTATGGATTATTTTATACGGTTC
ATTTTATTGTCGTTTTTGAAAGGTCACGTGGAGCTCTCCAGCCTGCGGGC
AGGACCCCTGCTTTCAGTCTCTTTAATGGGTGCGGGCGGGCGGGTGGATT
GATGGGCAGTTGAATAATTGTGTTCGGTAGGGGAGAGTGGGATTCTGGGC
ACCTCCCGCCCACTACAGCCGCTTCACTCCGTGAGGCGCACAAAAGATGG
ACAACAAGGATGAAGATTGCAAAAAGGTGGGGGGGAAGGAGGCAAAAAGA
AAACATCAGTGGAAGA

protein sequence of jgi.p|Nanoce1779_2|574617

>mRNA_912-protein ID=mRNA_912-protein|Name=jgi.p|Nanoce1779_2|574617|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MLRLTRAVPKNLLALASRSQSSLACLDEEFPGLPALNPAVGTPRLVETTT
LPSGVKVVSTACGKMSSVGLSVAAGSMYEALPSENGAALLLKHLAFKGTA
ARSSLRLMRDLESVGSIPSASVGREAVVYRVTSQPDFAEQALQAVFETAL
TPKITPYLVSELQVAAAADMEAYAADARLQLSEALYEAAYGENTPLGRPL
YFPGTDVTSGSLAAYRAKTFGSGSLTVVGVGVAHAQLSSWAAGLTEGLAR
GSARAAPISAYVGGEARLKASSDATFVGLALAAPSKADAGALGVLAAAWQ
AALPAGASVFTLPGLVGVTGVASPSAAGAYVDSLLQVLKSTGEDFALAKK
AAQVAALIKLDWALFEGLADGSATVAVDGVSEAEVKALHAKIWKGGLSIA
SLGDVSKVPKLSSLK*

mRNA from alignment at scaffold_2:732955..734570+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_912 ID=mRNA_912|Name=jgi.p|Nanoce1779_2|574617|organism=Nannochloropsis oceanica|type=mRNA|length=1616bp|location=Sequence derived from alignment at scaffold_2:732955..734570+ (Nannochloropsis oceanica)
ACAGGAAGGACACATGTTGCGGCTTACTCGCGCTGTCCCCAAGAACCTGC
TGGCATTGGCCAGCCGTAGTCAGAGCTCCTTGGCCTGCCTTGATGAGGAG
TTCCCTGGATTGCCTGCTTTGAACCCTGCTGTCGGTACGCCGCGTTTGGT
GGAGACAACTACGCTTCCTAGCGGGGTGAAGGTGGTTTCTACGGCATGCG
GGAAGATGTCTTCTGTGGGATTGTCTGTGGCTGCGGGCAGTATGTACGAG
GCTCTCCCAAGTGAGAACGGCGCTGCCTTGTTGCTTAAACATCTTGCCTT
TAAAGGGACCGCGGCACGGTCCTCTTTGCGACTTATGCGCGACCTGGAGA
GCGTGGGTTCGATCCCGTCAGCCAGTGTCGGAAGGGAGGCTGTGGTGTAT
CGCGTCACTTCGCAGCCCGACTTCGCGGAGCAAGCTCTCCAGGCTGTTTT
TGAGACCGCTTTGACGCCAAAGATAACGCCCTACCTCGTCTCGGAGCTGC
AAGTCGCCGCTGCCGCGGACATGGAAGCCTACGCCGCGGATGCACGTCTG
CAGCTGAGCGAGGCCTTGTACGAGGCGGCCTACGGGGAGAACACGCCCTT
AGGCCGGCCCCTATACTTCCCAGGCACGGATGTCACTTCGGGATCCCTCG
CCGCCTATCGCGCCAAAACCTTTGGGTCCGGCTCGCTCACTGTGGTGGGG
GTTGGGGTCGCGCATGCCCAGCTTTCGTCTTGGGCGGCGGGCCTGACGGA
GGGATTAGCTAGGGGCAGCGCCAGGGCTGCGCCTATCTCGGCGTATGTTG
GGGGTGAGGCGCGTCTCAAGGCTTCTTCGGATGCCACTTTTGTGGGCTTG
GCACTGGCAGCACCAAGCAAGGCGGACGCGGGGGCGTTGGGCGTGTTGGC
CGCAGCCTGGCAGGCGGCCTTGCCTGCGGGCGCGTCCGTCTTTACGCTAC
CTGGCCTGGTGGGCGTGACGGGCGTGGCTTCTCCCAGTGCGGCGGGGGCC
TACGTGGATTCGTTACTTCAGGTGCTCAAGAGCACGGGGGAGGACTTTGC
CTTGGCCAAAAAAGCAGCACAAGTAGCGGCCTTGATCAAGCTGGACTGGG
CGCTTTTTGAAGGCCTGGCAGACGGGAGTGCCACAGTTGCTGTTGACGGG
GTTTCCGAGGCGGAAGTCAAGGCTCTTCATGCCAAGATCTGGAAGGGTGG
CCTCAGCATTGCCTCGCTCGGGGATGTGAGCAAGGTGCCCAAGCTCTCCA
GCCTCAAGTAAATGATCGAACGTTGGGAAAGAGGAGAGAGTGAAAGTTTT
TGGCTGCATGTAGGTGTTGGTGCTTTTGTATGGATTATTTTATACGGTTC
ATTTTATTGTCGTTTTTGAAAGGTCACGTGGAGCTCTCCAGCCTGCGGGC
AGGACCCCTGCTTTCAGTCTCTTTAATGGGTGCGGGCGGGCGGGTGGATT
GATGGGCAGTTGAATAATTGTGTTCGGTAGGGGAGAGTGGGATTCTGGGC
ACCTCCCGCCCACTACAGCCGCTTCACTCCGTGAGGCGCACAAAAGATGG
ACAACAAGGATGAAGATTGCAAAAAGGTGGGGGGGAAGGAGGCAAAAAGA
AAACATCAGTGGAAGA

Coding sequence (CDS) from alignment at scaffold_2:732955..734570+

>mRNA_912 ID=mRNA_912|Name=jgi.p|Nanoce1779_2|574617|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_2:732955..734570+ (Nannochloropsis oceanica)
ATGTTGCGGCTTACTCGCGCTGTCCCCAAGAACCTGCTGGCATTGGCCAG
CCGTAGTCAGAGCTCCTTGGCCTGCCTTGATGAGGAGTTCCCTGGATTGC
CTGCTTTGAACCCTGCTGTCGGTACGCCGCGTTTGGTGGAGACAACTACG
CTTCCTAGCGGGGTGAAGGTGGTTTCTACGGCATGCGGGAAGATGTCTTC
TGTGGGATTGTCTGTGGCTGCGGGCAGTATGTACGAGGCTCTCCCAAGTG
AGAACGGCGCTGCCTTGTTGCTTAAACATCTTGCCTTTAAAGGGACCGCG
GCACGGTCCTCTTTGCGACTTATGCGCGACCTGGAGAGCGTGGGTTCGAT
CCCGTCAGCCAGTGTCGGAAGGGAGGCTGTGGTGTATCGCGTCACTTCGC
AGCCCGACTTCGCGGAGCAAGCTCTCCAGGCTGTTTTTGAGACCGCTTTG
ACGCCAAAGATAACGCCCTACCTCGTCTCGGAGCTGCAAGTCGCCGCTGC
CGCGGACATGGAAGCCTACGCCGCGGATGCACGTCTGCAGCTGAGCGAGG
CCTTGTACGAGGCGGCCTACGGGGAGAACACGCCCTTAGGCCGGCCCCTA
TACTTCCCAGGCACGGATGTCACTTCGGGATCCCTCGCCGCCTATCGCGC
CAAAACCTTTGGGTCCGGCTCGCTCACTGTGGTGGGGGTTGGGGTCGCGC
ATGCCCAGCTTTCGTCTTGGGCGGCGGGCCTGACGGAGGGATTAGCTAGG
GGCAGCGCCAGGGCTGCGCCTATCTCGGCGTATGTTGGGGGTGAGGCGCG
TCTCAAGGCTTCTTCGGATGCCACTTTTGTGGGCTTGGCACTGGCAGCAC
CAAGCAAGGCGGACGCGGGGGCGTTGGGCGTGTTGGCCGCAGCCTGGCAG
GCGGCCTTGCCTGCGGGCGCGTCCGTCTTTACGCTACCTGGCCTGGTGGG
CGTGACGGGCGTGGCTTCTCCCAGTGCGGCGGGGGCCTACGTGGATTCGT
TACTTCAGGTGCTCAAGAGCACGGGGGAGGACTTTGCCTTGGCCAAAAAA
GCAGCACAAGTAGCGGCCTTGATCAAGCTGGACTGGGCGCTTTTTGAAGG
CCTGGCAGACGGGAGTGCCACAGTTGCTGTTGACGGGGTTTCCGAGGCGG
AAGTCAAGGCTCTTCATGCCAAGATCTGGAAGGGTGGCCTCAGCATTGCC
TCGCTCGGGGATGTGAGCAAGGTGCCCAAGCTCTCCAGCCTCAAGTAA

Synonyms

Publications