jgi.p|Nanoce1779_2|574614, mRNA_910 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574614
Unique Name	mRNA_910
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2097
Alignment location	scaffold_2:725886..727982 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574700
Track	FilteredModels2
ProteinId	574614

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:725886..727982 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574614	gene_910	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574614	mRNA_910-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_910	CDS_910	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:725886..727982+
coding sequence from alignment at scaffold_2:725886..727982+

mRNA sequence

>mRNA_910 ID=mRNA_910|Name=jgi.p|Nanoce1779_2|574614|organism=Nannochloropsis oceanica|type=mRNA|length=2097bp
AGCCATATGCACTGCCTTCTCCTGACAGCGGCGCTGACGGTGCTTATCCA
GGGCGCCGAGGGTATTGGTAGCAGCAGAAGGACAGCGACAGGCTTCATTG
GCGGTGGCTACCAGGTTGCTCCTGGTTGGCCGGCTATCCCGTCTTACCAA
AGACGCAGGAGGGGGGCCAGCCGGATGGAGGTCTTTGAAGGAAATCCCTT
CGGCAAGGCGGTGTGGAACCTGGTTTGGAAGCTGCCAGTCATGAAAAGAG
GCAAACCGGGTACACCCATTGAATTTGGGGATGTGGCGCATGTGCTGCGT
AAAAACATTGAGCAGATATACGGCAACGAGCCCAGTGTGGATGGGGCCCC
GCTGGCCGAGGGGGAGGTCTCCTCCATGACGGACGGGACGGCCTTTCTGG
GCCTGTACCAATACTTTCGCAAGTATGGTCCCGTGTATAAGCTATGTTTT
GGCCCGAAATCCTTCATTGTGCTTTCGGACCCCACCATTATCAAGCACGT
GCTCAAGACGAACAACGCCGCCTACGACAAGGGCTTGCTGGCCGAGATCT
TGGAGCCTATCATGGGCAAGGGATTGATCCCGGCCGACAACGAGACCTGG
AAGGTCCGGCGCCGCGCGATCGTGCCTGCCTTTCATCAGCAGTGGTTGGA
GCACATGATTAGCCTGTTCGGGGGCTGCAGCGACGTGCTTATGCAGAAGC
TTGACGGCCTTGCCGCCACCAAGACAGACGTGGACATGGAGAACCTCTTT
TGCTCCGTATCGCTGGACATTATCGGCAAAGCTGTATTCAACTACCCGTT
CGACTCGGTCACTAAGGAGTCTCCCGTCATCCAGGCTGTCTATAGTGTCC
TAAAGGAAGCCGAGCATCGCTCTGTCACTCCCCTGCCTTATTGGAACCTA
CCCCTTGCCAACTTGGTGGTGCCTCGCCTCCGCAAGTTCAAGGCCGACCT
GAAGGTCATCAATGACGTCCTGGACGAGCTGATCGAGAAGGCACGTAACT
CGCAAGAAGTAACAGACCTCGAGGACTTGGAAAAACGCAATTACAACAAG
GTCGGCGATGCCTCGCTGCTCCGGTTCCTGGTGGACCTGCGGGGGGAGGA
CACGAGCAACAAGCAATTGAGAGACGATCTCATGACGATGCTCATTGCTG
GCCACGAGACAACGGCTGCTGTCCTAACCTGGGCCCTGTTTGAAATTTCG
CAGAAGCCTGACGTACGGGCCAAGCTGCAGGCTGAGGTGGACCGAGTGCT
AGGGGACCGCATGCCTACCTTGGAGGATATCAAGGCCATGCAACTGGTGC
GCTTCAGTGTGGCCGAGTCGCTGCGCATGTACCCGGAACCACCTCTCCTC
ATCCGTCGGGCCCTAGAGGACCACACCTTGCCCAAGGGCACGGCGGGCTT
CGAACCCCGCATCATCCGCGGCTGCGACATATTCATCTCAATCTACAACC
TGCACCGCGACCCGGATTTGTGGCCTAAACCGGACAACTTTGACCCGGAG
CGATACCTTCGCCCTCACAGCAACAAGGCCAAGTACCCAGACTGGGCGGG
GTTTGACCCCGCACAAGTCACTGGCCTGTACCCCAACGAAGTGGCTGCGG
ATTTCGCCATGCTACCCTTTGGTGGGGGTGCACGCAAGTGCGTGGGCGAT
CAATTTGCGACACTTGAGGCAACCGTCACGCTGGCCATGCTCTTGCGTCG
CTTCGATTTTGACTTTGTAGGGAGGCCCGAGGACGTGGGCATGTTCACAG
GTGCCACAATTCACACCCGAAATGGCTTGAAAATGACACCCCGTCGGCGT
GTGCCAGCCCCACCTGCGGCTACGCCACCTCCCGCAACGACCGTCATCGA
CCGCGAGCTGCAACCACAGGGGGCATAATGAGGCATTGGACATTCGAGAA
CAGGAAAGATGTGATGCCGAAGAGGAGCGGGGCTGTTGTATAGATTTTAA
AGGAAAGCTTTCTCCCACTCAAGATAGGCGTTGGGGAAAAAGAATTTAGG
AGGTGGAAGATACTGAGCCCTGTTGCTGAGAGGACCCTTAACCTTCTCAA
AGGGGACATGGCACCAAGAGAAAAAGAAAACAGGATGCAGATTGATA

protein sequence of jgi.p|Nanoce1779_2|574614

>mRNA_910-protein ID=mRNA_910-protein|Name=jgi.p|Nanoce1779_2|574614|organism=Nannochloropsis oceanica|type=polypeptide|length=624bp
MHCLLLTAALTVLIQGAEGIGSSRRTATGFIGGGYQVAPGWPAIPSYQRR
RRGASRMEVFEGNPFGKAVWNLVWKLPVMKRGKPGTPIEFGDVAHVLRKN
IEQIYGNEPSVDGAPLAEGEVSSMTDGTAFLGLYQYFRKYGPVYKLCFGP
KSFIVLSDPTIIKHVLKTNNAAYDKGLLAEILEPIMGKGLIPADNETWKV
RRRAIVPAFHQQWLEHMISLFGGCSDVLMQKLDGLAATKTDVDMENLFCS
VSLDIIGKAVFNYPFDSVTKESPVIQAVYSVLKEAEHRSVTPLPYWNLPL
ANLVVPRLRKFKADLKVINDVLDELIEKARNSQEVTDLEDLEKRNYNKVG
DASLLRFLVDLRGEDTSNKQLRDDLMTMLIAGHETTAAVLTWALFEISQK
PDVRAKLQAEVDRVLGDRMPTLEDIKAMQLVRFSVAESLRMYPEPPLLIR
RALEDHTLPKGTAGFEPRIIRGCDIFISIYNLHRDPDLWPKPDNFDPERY
LRPHSNKAKYPDWAGFDPAQVTGLYPNEVAADFAMLPFGGGARKCVGDQF
ATLEATVTLAMLLRRFDFDFVGRPEDVGMFTGATIHTRNGLKMTPRRRVP
APPAATPPPATTVIDRELQPQGA*

mRNA from alignment at scaffold_2:725886..727982+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_910 ID=mRNA_910|Name=jgi.p|Nanoce1779_2|574614|organism=Nannochloropsis oceanica|type=mRNA|length=2097bp|location=Sequence derived from alignment at scaffold_2:725886..727982+ (Nannochloropsis oceanica)
AGCCATATGCACTGCCTTCTCCTGACAGCGGCGCTGACGGTGCTTATCCA
GGGCGCCGAGGGTATTGGTAGCAGCAGAAGGACAGCGACAGGCTTCATTG
GCGGTGGCTACCAGGTTGCTCCTGGTTGGCCGGCTATCCCGTCTTACCAA
AGACGCAGGAGGGGGGCCAGCCGGATGGAGGTCTTTGAAGGAAATCCCTT
CGGCAAGGCGGTGTGGAACCTGGTTTGGAAGCTGCCAGTCATGAAAAGAG
GCAAACCGGGTACACCCATTGAATTTGGGGATGTGGCGCATGTGCTGCGT
AAAAACATTGAGCAGATATACGGCAACGAGCCCAGTGTGGATGGGGCCCC
GCTGGCCGAGGGGGAGGTCTCCTCCATGACGGACGGGACGGCCTTTCTGG
GCCTGTACCAATACTTTCGCAAGTATGGTCCCGTGTATAAGCTATGTTTT
GGCCCGAAATCCTTCATTGTGCTTTCGGACCCCACCATTATCAAGCACGT
GCTCAAGACGAACAACGCCGCCTACGACAAGGGCTTGCTGGCCGAGATCT
TGGAGCCTATCATGGGCAAGGGATTGATCCCGGCCGACAACGAGACCTGG
AAGGTCCGGCGCCGCGCGATCGTGCCTGCCTTTCATCAGCAGTGGTTGGA
GCACATGATTAGCCTGTTCGGGGGCTGCAGCGACGTGCTTATGCAGAAGC
TTGACGGCCTTGCCGCCACCAAGACAGACGTGGACATGGAGAACCTCTTT
TGCTCCGTATCGCTGGACATTATCGGCAAAGCTGTATTCAACTACCCGTT
CGACTCGGTCACTAAGGAGTCTCCCGTCATCCAGGCTGTCTATAGTGTCC
TAAAGGAAGCCGAGCATCGCTCTGTCACTCCCCTGCCTTATTGGAACCTA
CCCCTTGCCAACTTGGTGGTGCCTCGCCTCCGCAAGTTCAAGGCCGACCT
GAAGGTCATCAATGACGTCCTGGACGAGCTGATCGAGAAGGCACGTAACT
CGCAAGAAGTAACAGACCTCGAGGACTTGGAAAAACGCAATTACAACAAG
GTCGGCGATGCCTCGCTGCTCCGGTTCCTGGTGGACCTGCGGGGGGAGGA
CACGAGCAACAAGCAATTGAGAGACGATCTCATGACGATGCTCATTGCTG
GCCACGAGACAACGGCTGCTGTCCTAACCTGGGCCCTGTTTGAAATTTCG
CAGAAGCCTGACGTACGGGCCAAGCTGCAGGCTGAGGTGGACCGAGTGCT
AGGGGACCGCATGCCTACCTTGGAGGATATCAAGGCCATGCAACTGGTGC
GCTTCAGTGTGGCCGAGTCGCTGCGCATGTACCCGGAACCACCTCTCCTC
ATCCGTCGGGCCCTAGAGGACCACACCTTGCCCAAGGGCACGGCGGGCTT
CGAACCCCGCATCATCCGCGGCTGCGACATATTCATCTCAATCTACAACC
TGCACCGCGACCCGGATTTGTGGCCTAAACCGGACAACTTTGACCCGGAG
CGATACCTTCGCCCTCACAGCAACAAGGCCAAGTACCCAGACTGGGCGGG
GTTTGACCCCGCACAAGTCACTGGCCTGTACCCCAACGAAGTGGCTGCGG
ATTTCGCCATGCTACCCTTTGGTGGGGGTGCACGCAAGTGCGTGGGCGAT
CAATTTGCGACACTTGAGGCAACCGTCACGCTGGCCATGCTCTTGCGTCG
CTTCGATTTTGACTTTGTAGGGAGGCCCGAGGACGTGGGCATGTTCACAG
GTGCCACAATTCACACCCGAAATGGCTTGAAAATGACACCCCGTCGGCGT
GTGCCAGCCCCACCTGCGGCTACGCCACCTCCCGCAACGACCGTCATCGA
CCGCGAGCTGCAACCACAGGGGGCATAATGAGGCATTGGACATTCGAGAA
CAGGAAAGATGTGATGCCGAAGAGGAGCGGGGCTGTTGTATAGATTTTAA
AGGAAAGCTTTCTCCCACTCAAGATAGGCGTTGGGGAAAAAGAATTTAGG
AGGTGGAAGATACTGAGCCCTGTTGCTGAGAGGACCCTTAACCTTCTCAA
AGGGGACATGGCACCAAGAGAAAAAGAAAACAGGATGCAGATTGATA

Coding sequence (CDS) from alignment at scaffold_2:725886..727982+

>mRNA_910 ID=mRNA_910|Name=jgi.p|Nanoce1779_2|574614|organism=Nannochloropsis oceanica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_2:725886..727982+ (Nannochloropsis oceanica)
ATGCACTGCCTTCTCCTGACAGCGGCGCTGACGGTGCTTATCCAGGGCGC
CGAGGGTATTGGTAGCAGCAGAAGGACAGCGACAGGCTTCATTGGCGGTG
GCTACCAGGTTGCTCCTGGTTGGCCGGCTATCCCGTCTTACCAAAGACGC
AGGAGGGGGGCCAGCCGGATGGAGGTCTTTGAAGGAAATCCCTTCGGCAA
GGCGGTGTGGAACCTGGTTTGGAAGCTGCCAGTCATGAAAAGAGGCAAAC
CGGGTACACCCATTGAATTTGGGGATGTGGCGCATGTGCTGCGTAAAAAC
ATTGAGCAGATATACGGCAACGAGCCCAGTGTGGATGGGGCCCCGCTGGC
CGAGGGGGAGGTCTCCTCCATGACGGACGGGACGGCCTTTCTGGGCCTGT
ACCAATACTTTCGCAAGTATGGTCCCGTGTATAAGCTATGTTTTGGCCCG
AAATCCTTCATTGTGCTTTCGGACCCCACCATTATCAAGCACGTGCTCAA
GACGAACAACGCCGCCTACGACAAGGGCTTGCTGGCCGAGATCTTGGAGC
CTATCATGGGCAAGGGATTGATCCCGGCCGACAACGAGACCTGGAAGGTC
CGGCGCCGCGCGATCGTGCCTGCCTTTCATCAGCAGTGGTTGGAGCACAT
GATTAGCCTGTTCGGGGGCTGCAGCGACGTGCTTATGCAGAAGCTTGACG
GCCTTGCCGCCACCAAGACAGACGTGGACATGGAGAACCTCTTTTGCTCC
GTATCGCTGGACATTATCGGCAAAGCTGTATTCAACTACCCGTTCGACTC
GGTCACTAAGGAGTCTCCCGTCATCCAGGCTGTCTATAGTGTCCTAAAGG
AAGCCGAGCATCGCTCTGTCACTCCCCTGCCTTATTGGAACCTACCCCTT
GCCAACTTGGTGGTGCCTCGCCTCCGCAAGTTCAAGGCCGACCTGAAGGT
CATCAATGACGTCCTGGACGAGCTGATCGAGAAGGCACGTAACTCGCAAG
AAGTAACAGACCTCGAGGACTTGGAAAAACGCAATTACAACAAGGTCGGC
GATGCCTCGCTGCTCCGGTTCCTGGTGGACCTGCGGGGGGAGGACACGAG
CAACAAGCAATTGAGAGACGATCTCATGACGATGCTCATTGCTGGCCACG
AGACAACGGCTGCTGTCCTAACCTGGGCCCTGTTTGAAATTTCGCAGAAG
CCTGACGTACGGGCCAAGCTGCAGGCTGAGGTGGACCGAGTGCTAGGGGA
CCGCATGCCTACCTTGGAGGATATCAAGGCCATGCAACTGGTGCGCTTCA
GTGTGGCCGAGTCGCTGCGCATGTACCCGGAACCACCTCTCCTCATCCGT
CGGGCCCTAGAGGACCACACCTTGCCCAAGGGCACGGCGGGCTTCGAACC
CCGCATCATCCGCGGCTGCGACATATTCATCTCAATCTACAACCTGCACC
GCGACCCGGATTTGTGGCCTAAACCGGACAACTTTGACCCGGAGCGATAC
CTTCGCCCTCACAGCAACAAGGCCAAGTACCCAGACTGGGCGGGGTTTGA
CCCCGCACAAGTCACTGGCCTGTACCCCAACGAAGTGGCTGCGGATTTCG
CCATGCTACCCTTTGGTGGGGGTGCACGCAAGTGCGTGGGCGATCAATTT
GCGACACTTGAGGCAACCGTCACGCTGGCCATGCTCTTGCGTCGCTTCGA
TTTTGACTTTGTAGGGAGGCCCGAGGACGTGGGCATGTTCACAGGTGCCA
CAATTCACACCCGAAATGGCTTGAAAATGACACCCCGTCGGCGTGTGCCA
GCCCCACCTGCGGCTACGCCACCTCCCGCAACGACCGTCATCGACCGCGA
GCTGCAACCACAGGGGGCATAA

Synonyms

Publications