jgi.p|Nanoce1779_2|574610, mRNA_909 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574610
Unique Name	mRNA_909
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	938
Alignment location	scaffold_2:723806..725513 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574696
Track	FilteredModels2
ProteinId	574610

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:723806..725513 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574610	gene_909	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574610	mRNA_909-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_909	CDS_909	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:723806..725513-
coding sequence from alignment at scaffold_2:723806..725513-

mRNA sequence

>mRNA_909 ID=mRNA_909|Name=jgi.p|Nanoce1779_2|574610|organism=Nannochloropsis oceanica|type=mRNA|length=938bp
ACAGGGCCTGCTTTAGTCCTTGCGCGTTGCCGACCGTCCATTCGCGATGA
AGATACCCGCACTTGCCGTGGCTGTCGCCTCTTTTTCGGTAGCCAGCGCC
TTCTTTTCGCCCCTGCCTGCCTTACCCTTGGTACGGGTGGTACAGCGACG
GAATAATGCCCAGCGGCAAATCATTGTGGCCCTGACAAGCAATGACCTTA
AGAATGGGTTGAACATCGAGCTCGACGGCACGCCCATGCGGGTGGTGGAA
TTTCTGCATGTCAAACCAGGAAAGGGTGCGGCCTTTGTGCGCTCTAAGCT
CAAAAACCTCATTTCGGGCACGACCATGGAAAAGACCTTTCGGGCGGGCG
AGTCAGTGGAAGAGGCGTCAGTTATCAAGATGGACATGCAGTTCTCCTAC
GACGACGGCGAGGCTTACCAGTTCATGAACTTGGAGACTTACGAGACGGA
GAGCGTACCCAAGACTGCCTTTTCATCCAATAACCAAGGGTCCTTCCTCC
TGGAAGGCATGGTCGTGCAGATAACCAAGTGGAATGAGCGGGCCATTGAT
GTAGAGCTGCCGCCCAACTACATCTACGAGGTAGTGGAGACCGACCCCAA
CTTCAAGGGAAACACCGCACAGGGCGGCTCCAAGCCAGCCAAGCTCAATT
CTGGCGCCACTGTGACAGTGCCCATGTTCATCGAGGTCGGAGAGAAGATC
AAGGTTGACACGAGAGAGGCAACGTACGTGTCGCGGGGGGAATCTTAGGA
CATTCGAGTAAGCATGAGGGAGATTCGGTAGAGCGAGGGAATACCCTCTT
TTGCGCTGCCAAGGCACAATGCTGATATTAAATTTAAAGAGGTGTGGGAC
GGGAGCCAGCTTCCCAGACACCAGACACGACAGCATTTGGACTCAGGATG
GTAACATGAAAAGAAGAGAGAACAACTCCATGCCATAC

protein sequence of jgi.p|Nanoce1779_2|574610

>mRNA_909-protein ID=mRNA_909-protein|Name=jgi.p|Nanoce1779_2|574610|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MKIPALAVAVASFSVASAFFSPLPALPLVRVVQRRNNAQRQIIVALTSND
LKNGLNIELDGTPMRVVEFLHVKPGKGAAFVRSKLKNLISGTTMEKTFRA
GESVEEASVIKMDMQFSYDDGEAYQFMNLETYETESVPKTAFSSNNQGSF
LLEGMVVQITKWNERAIDVELPPNYIYEVVETDPNFKGNTAQGGSKPAKL
NSGATVTVPMFIEVGEKIKVDTREATYVSRGES*

mRNA from alignment at scaffold_2:723806..725513-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_909 ID=mRNA_909|Name=jgi.p|Nanoce1779_2|574610|organism=Nannochloropsis oceanica|type=mRNA|length=1708bp|location=Sequence derived from alignment at scaffold_2:723806..725513- (Nannochloropsis oceanica)
ACAGGGCCTGCTTTAGTCCTTGCGCGTTGCCGACCGTCCATTCGCGATGA
AGATACCCGCACTTGGTGAGTTGAATGATGTGGGAGGGCTGCACAAAACG
GGGGATCAGCATGCTCACGCAAACCCTTCCGGCGCCCATGACCATCCGTT
CCCACTTATACAGCCGTGGCTGTCGCCTCTTTTTCGGTAGCCAGCGCCTT
CTTTTCGCCCCTGGTACAGTGACTGGAGGGAGAGAGTGGGAAAGCGCACG
CTGAGCAGCCGCCTGATTCCTGTCACTCTCACGTCCTGAATCAATCCTCC
ATAATTCTTCCTCCCTTTTCACCACAAAAGCCTGCCTTACCCTTGGTACG
GGTGGTACAGCGACGGAATAATGCCCAGCGGCAAATCATTGTGGCCCTGA
CAAGCAATGACCTTAAGAATGGGTTGAACATCGAGCTCGACGGCACGCCC
ATGCGGGTACGTTGCTGCTTGGTGCTTTGGGGTTGACGTCGGGATAAGCA
TGGTAGTCATGGTAGTTGATGCATGTAACATGTCAAGATGTCAGACAATG
TTCAACCTTTACGATGTCTGGGGTCTTGTAGCATGCAGTGTACGAGTTGT
CTGTCCCCTCCCAAACAACTAACCCGTACTGAAGGAGTAGGGGCACCCCG
AGATCTGTATTCAAATCTGAGACAGCCAAGAAAAGTACACGAATCATTTG
CTTCTGGAGAGGAAATTGAGAATAGGTGCCTCATACCACTAACGCTTATT
CTCCACCGGCCTCCTTACCGTACCGACATTTTCTCCCTTCCCTCTCTTCT
GGATATCAACCTTAGGTGGTGGAATTTCTGCATGTCAAACCAGGAAAGGG
TGCGGCCTTTGTGCGCTCTAAGCTCAAAAACCTCATTTCGGGCACGACCA
TGGAAAAGACCTTTCGGGCGGGCGAGTCAGTGGAAGAGGCGTCAGTTATC
AAGATGGACATGCAGTTCTCCTACGACGACGGCGAGGCTTACCAGTTCAT
GAACTTGGAGACTTACGAGACGGAGAGCGTACCCAAGACTGCCTTTTCAT
CCAATAACCAAGGGTCCTTCCTCCTGGAAGGCATGGTCGTGCAGGTACGA
GGGAACGAGTGATGACGACGAGCTCTTACCCTCTCTCAACAGAAACGGGA
ACTTGCTGGTTCATTGCTTAGTGTCATGCGATCAAATTTGCCCATTTGAC
CGTGCTCTCTCTAACCATGTTGCCCCGCAATAGCTCACCTTTTCCTCCCT
TCAATTTCATCCACTACCAAAACTTACACTCTCATGACAGATAACCAAGT
GGAATGAGCGGGCCATTGATGTAGAGCTGCCGCCCAACTACATCTACGAG
GTAGTGGAGACCGACCCCAACTTCAAGGGAAACACCGCACAGGGCGGCTC
CAAGCCAGCCAAGCTCAATTCTGGCGCCACTGTGACAGTGCCCATGTTCA
TCGAGGTCGGAGAGAAGATCAAGGTTGACACGAGAGAGGCAACGTACGTG
TCGCGGGGGGAATCTTAGGACATTCGAGTAAGCATGAGGGAGATTCGGTA
GAGCGAGGGAATACCCTCTTTTGCGCTGCCAAGGCACAATGCTGATATTA
AATTTAAAGAGGTGTGGGACGGGAGCCAGCTTCCCAGACACCAGACACGA
CAGCATTTGGACTCAGGATGGTAACATGAAAAGAAGAGAGAACAACTCCA
TGCCATAC

Coding sequence (CDS) from alignment at scaffold_2:723806..725513-

>mRNA_909 ID=mRNA_909|Name=jgi.p|Nanoce1779_2|574610|organism=Nannochloropsis oceanica|type=CDS|length=3510bp|location=Sequence derived from alignment at scaffold_2:723806..725513- (Nannochloropsis oceanica)
ATAACCAAGTGGAATGAGCGGGCCATTGATGTAGAGCTGCCGCCCAACTA
CATCTACGAGGTAGTGGAGACCGACCCCAACTTCAAGGGAAACACCGCAC
AGGGCGGCTCCAAGCCAGCCAAGCTCAATTCTGGCGCCACTGTGACAGTG
CCCATGTTCATCGAGGTCGGAGAGAAGATCAAGGTTGACACGAGAGAGGC
AACGTACGTGTCGCGGGGGGAATCTTAGGTGGTGGAATTTCTGCATGTCA
AACCAGGAAAGGGTGCGGCCTTTGTGCGCTCTAAGCTCAAAAACCTCATT
TCGGGCACGACCATGGAAAAGACCTTTCGGGCGGGCGAGTCAGTGGAAGA
GGCGTCAGTTATCAAGATGGACATGCAGTTCTCCTACGACGACGGCGAGG
CTTACCAGTTCATGAACTTGGAGACTTACGAGACGGAGAGCGTACCCAAG
ACTGCCTTTTCATCCAATAACCAAGGGTCCTTCCTCCTGGAAGGCATGGT
CGTGCAGCCTGCCTTACCCTTGGTACGGGTGGTACAGCGACGGAATAATG
CCCAGCGGCAAATCATTGTGGCCCTGACAAGCAATGACCTTAAGAATGGG
TTGAACATCGAGCTCGACGGCACGCCCATGCGGCCGTGGCTGTCGCCTCT
TTTTCGGTAGCCAGCGCCTTCTTTTCGCCCCTGATGAAGATACCCGCACT
TGATAACCAAGTGGAATGAGCGGGCCATTGATGTAGAGCTGCCGCCCAAC
TACATCTACGAGGTAGTGGAGACCGACCCCAACTTCAAGGGAAACACCGC
ACAGGGCGGCTCCAAGCCAGCCAAGCTCAATTCTGGCGCCACTGTGACAG
TGCCCATGTTCATCGAGGTCGGAGAGAAGATCAAGGTTGACACGAGAGAG
GCAACGTACGTGTCGCGGGGGGAATCTTAGGTGGTGGAATTTCTGCATGT
CAAACCAGGAAAGGGTGCGGCCTTTGTGCGCTCTAAGCTCAAAAACCTCA
TTTCGGGCACGACCATGGAAAAGACCTTTCGGGCGGGCGAGTCAGTGGAA
GAGGCGTCAGTTATCAAGATGGACATGCAGTTCTCCTACGACGACGGCGA
GGCTTACCAGTTCATGAACTTGGAGACTTACGAGACGGAGAGCGTACCCA
AGACTGCCTTTTCATCCAATAACCAAGGGTCCTTCCTCCTGGAAGGCATG
GTCGTGCAGCCTGCCTTACCCTTGGTACGGGTGGTACAGCGACGGAATAA
TGCCCAGCGGCAAATCATTGTGGCCCTGACAAGCAATGACCTTAAGAATG
GGTTGAACATCGAGCTCGACGGCACGCCCATGCGGCCGTGGCTGTCGCCT
CTTTTTCGGTAGCCAGCGCCTTCTTTTCGCCCCTGATGAAGATACCCGCA
CTTGATAACCAAGTGGAATGAGCGGGCCATTGATGTAGAGCTGCCGCCCA
ACTACATCTACGAGGTAGTGGAGACCGACCCCAACTTCAAGGGAAACACC
GCACAGGGCGGCTCCAAGCCAGCCAAGCTCAATTCTGGCGCCACTGTGAC
AGTGCCCATGTTCATCGAGGTCGGAGAGAAGATCAAGGTTGACACGAGAG
AGGCAACGTACGTGTCGCGGGGGGAATCTTAGGTGGTGGAATTTCTGCAT
GTCAAACCAGGAAAGGGTGCGGCCTTTGTGCGCTCTAAGCTCAAAAACCT
CATTTCGGGCACGACCATGGAAAAGACCTTTCGGGCGGGCGAGTCAGTGG
AAGAGGCGTCAGTTATCAAGATGGACATGCAGTTCTCCTACGACGACGGC
GAGGCTTACCAGTTCATGAACTTGGAGACTTACGAGACGGAGAGCGTACC
CAAGACTGCCTTTTCATCCAATAACCAAGGGTCCTTCCTCCTGGAAGGCA
TGGTCGTGCAGCCTGCCTTACCCTTGGTACGGGTGGTACAGCGACGGAAT
AATGCCCAGCGGCAAATCATTGTGGCCCTGACAAGCAATGACCTTAAGAA
TGGGTTGAACATCGAGCTCGACGGCACGCCCATGCGGCCGTGGCTGTCGC
CTCTTTTTCGGTAGCCAGCGCCTTCTTTTCGCCCCTGATGAAGATACCCG
CACTTGATAACCAAGTGGAATGAGCGGGCCATTGATGTAGAGCTGCCGCC
CAACTACATCTACGAGGTAGTGGAGACCGACCCCAACTTCAAGGGAAACA
CCGCACAGGGCGGCTCCAAGCCAGCCAAGCTCAATTCTGGCGCCACTGTG
ACAGTGCCCATGTTCATCGAGGTCGGAGAGAAGATCAAGGTTGACACGAG
AGAGGCAACGTACGTGTCGCGGGGGGAATCTTAGGTGGTGGAATTTCTGC
ATGTCAAACCAGGAAAGGGTGCGGCCTTTGTGCGCTCTAAGCTCAAAAAC
CTCATTTCGGGCACGACCATGGAAAAGACCTTTCGGGCGGGCGAGTCAGT
GGAAGAGGCGTCAGTTATCAAGATGGACATGCAGTTCTCCTACGACGACG
GCGAGGCTTACCAGTTCATGAACTTGGAGACTTACGAGACGGAGAGCGTA
CCCAAGACTGCCTTTTCATCCAATAACCAAGGGTCCTTCCTCCTGGAAGG
CATGGTCGTGCAGCCTGCCTTACCCTTGGTACGGGTGGTACAGCGACGGA
ATAATGCCCAGCGGCAAATCATTGTGGCCCTGACAAGCAATGACCTTAAG
AATGGGTTGAACATCGAGCTCGACGGCACGCCCATGCGGCCGTGGCTGTC
GCCTCTTTTTCGGTAGCCAGCGCCTTCTTTTCGCCCCTGATGAAGATACC
CGCACTTGATAACCAAGTGGAATGAGCGGGCCATTGATGTAGAGCTGCCG
CCCAACTACATCTACGAGGTAGTGGAGACCGACCCCAACTTCAAGGGAAA
CACCGCACAGGGCGGCTCCAAGCCAGCCAAGCTCAATTCTGGCGCCACTG
TGACAGTGCCCATGTTCATCGAGGTCGGAGAGAAGATCAAGGTTGACACG
AGAGAGGCAACGTACGTGTCGCGGGGGGAATCTTAGGTGGTGGAATTTCT
GCATGTCAAACCAGGAAAGGGTGCGGCCTTTGTGCGCTCTAAGCTCAAAA
ACCTCATTTCGGGCACGACCATGGAAAAGACCTTTCGGGCGGGCGAGTCA
GTGGAAGAGGCGTCAGTTATCAAGATGGACATGCAGTTCTCCTACGACGA
CGGCGAGGCTTACCAGTTCATGAACTTGGAGACTTACGAGACGGAGAGCG
TACCCAAGACTGCCTTTTCATCCAATAACCAAGGGTCCTTCCTCCTGGAA
GGCATGGTCGTGCAGCCTGCCTTACCCTTGGTACGGGTGGTACAGCGACG
GAATAATGCCCAGCGGCAAATCATTGTGGCCCTGACAAGCAATGACCTTA
AGAATGGGTTGAACATCGAGCTCGACGGCACGCCCATGCGGCCGTGGCTG
TCGCCTCTTTTTCGGTAGCCAGCGCCTTCTTTTCGCCCCTGATGAAGATA
CCCGCACTTG

Synonyms

Publications