jgi.p|Nanoce1779_2|574604, mRNA_907 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574604
Unique Name	mRNA_907
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	871
Alignment location	scaffold_2:719633..721591 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574690
Track	FilteredModels2
ProteinId	574604

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:719633..721591 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574604	gene_907	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574604	mRNA_907-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_907	CDS_907	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:719633..721591+
coding sequence from alignment at scaffold_2:719633..721591+

mRNA sequence

>mRNA_907 ID=mRNA_907|Name=jgi.p|Nanoce1779_2|574604|organism=Nannochloropsis oceanica|type=mRNA|length=871bp
ACAGACACAAGCTACACCAGCGCTACAAGCAGGGCATGGAGGGGATCAAG
TCCGTCGTCATTATTATCGCCATGGAAGCCGAAGCCATGCCTCTCATCAC
GCACCTAGGCCTAACCCAGCAGTCCAATTACTTTGGACATGCGGCACCTT
TCCACTGCTTCAATGGCAAGTACAAGGGATATAAGCTGGCCATTGTTACT
AATGGGAAGGATCGCAAGTTTGGCTGTGACAATGTCGGCACGGTCCCCGC
AGCTCTGGCCACGTACCTGGCCGTGGAGTCTCTGAAGCCAGACTTGCTCA
TCAACGCGGGAACCGCCGGCGGATTCGAGTCCAAAGGCATGACAATCGGC
GATGTACTAATTAGCAGCACAATCCATAACCACGATCGGCGCATGATTTT
GCCCATATTTGTCGATTACGGCGTGCACAATCATACGGCGGTTGAGACTC
CCCGCCTGCGCGAGGCATTGAAGTTCAAGCTGGGTGTGGTGACCACTGGC
AACTCTTTGGACCACGTCGAGGCCGATGACGCTCTAATGGCAGCCAATGA
TGCCTCCGTGAAGGACATGGAGGCGGCGGCAGTGGCTTGGGCCGCAGAGC
TGTATGCAGTGCCCTACTTTGCTCTTAAGGTTGTGACAGACATTGTGGAT
GGGAAGCACGCCACCGAGGATGAGTTTGTGGCTAACTTTAGCATGGCTCA
AAAGCAGCTACAGAAATCCGTCCCCGCAGCTCTCGATTTTATTTTGGGCA
AACGACTGGCGGACTTATGAGTAAGAGCATGCCTATGGGCTCTCGAAACA
TATTGGTTACACTGATTGATGGCATGCGCTCGCAACAACAAAGAAAGCAA
ATATGTCAATCAACAATAGAA

protein sequence of jgi.p|Nanoce1779_2|574604

>mRNA_907-protein ID=mRNA_907-protein|Name=jgi.p|Nanoce1779_2|574604|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MEGIKSVVIIIAMEAEAMPLITHLGLTQQSNYFGHAAPFHCFNGKYKGYK
LAIVTNGKDRKFGCDNVGTVPAALATYLAVESLKPDLLINAGTAGGFESK
GMTIGDVLISSTIHNHDRRMILPIFVDYGVHNHTAVETPRLREALKFKLG
VVTTGNSLDHVEADDALMAANDASVKDMEAAAVAWAAELYAVPYFALKVV
TDIVDGKHATEDEFVANFSMAQKQLQKSVPAALDFILGKRLADL*

mRNA from alignment at scaffold_2:719633..721591+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_907 ID=mRNA_907|Name=jgi.p|Nanoce1779_2|574604|organism=Nannochloropsis oceanica|type=mRNA|length=1959bp|location=Sequence derived from alignment at scaffold_2:719633..721591+ (Nannochloropsis oceanica)
ACAGACACAAGCTACACCAGCGCTACAAGCAGGGCATGGAGGGGATCAAG
TCCGTCGTCATTATTATCGCCATGGAAGGTAAATTTGTGAGAGGGAGATG
TTGGTCTCGGGGAGAGGGTGGGGAGGTCGGACCGTCCGTCTACACGACAA
ACCTGGATCAAGTGTATAAGACCTGATCATCCTGTCCGTGAGGATATGAT
TCTCCACAGGTAAAGTGTTGAGCTTTTTCGCCATGCGTTATAACAACCCG
TCCGCGACGGGTACACTTAAAATACACAAGACAAGACAAGGTTCCAAATT
GTGATGGTCGAGGACGGCCATATGTGCTCCAGGGCCCAGGGCCCCCAAAA
GCATCGTGAAAGTATATGTGAACGAGATCTGCGCGCCCTGCCCAGGGGGG
GCTGGTGATGCTCTGCTCTAAACAGTGTCGGCATGCTTTGACATGCGCCA
TAAAATTACCCCCGCGGAGGGTGCATTCAAAAGAATTAAGTCAAGCCAAG
ACAAGAGAGGCCCAAACCCATGACCGATACAGTGTATGCGTATATAAATA
TGGCAGTGAGAGCTTTTGGGTTGATATGCGCAACGTCATGGCACCGTATA
TCTGATTTCAGACTGCGCCTTCACATACACACATACATTCAGCCGAAGCC
ATGCCTCTCATCACGCACCTAGGCCTAACCCAGCAGTCCAATTACTTTGG
ACATGCGGCACCTTTCCACTGCTTCAATGGCAAGTACAAGGGATATAAGC
TGGCCATTGTTACTAATGGGAAGGATCGCAAGTTTGGCTGTGACAATGTA
AGATAAGGTTCCTCCCTTTTTGCCTCTCCTCTGCTTATGCCCACTACACC
TTCTCGCGCAAAATGCGCCAAGCTCTTTGGTAGGCTTCAGCCAGGGTAGA
GTTAACTGGCTCTCTCGTGGCCCTTATTAATCATGCATAGGTCGGCACGG
TCCCCGCAGCTCTGGCCACGTACCTGGCCGTGGAGTCTCTGAAGCCAGAC
TTGCTCATCAACGCGGGAACCGCCGGCGGATTCGAGTCCAAAGGCATGAC
AATCGGCGATGTACTAATTAGCAGCACAATCCATAACCACGATCGGCGCA
TGATTTTGCCCATATTTGTCGATTACGGCGTGCACAATCATACGGCGGTT
GAGACTCCCCGCCTGCGCGAGGTAACTATAAGAAGTCGTGGGTCGCATGC
AATTACCCGCACACACATAGTGACGGGATACCAAGCTTGCTACGCACAAT
AAGATACTGATATTTTTCTCCGCTGTTTTCCCCCATTAATCAGGCATTGA
AGTTCAAGCTGGGTGTGGTGACCACTGGCAACTCTTTGGACCACGTCGAG
GCCGATGACGCTCTAATGGCAGCCAATGGTGCGTAACTGATGCTTTTAGA
TAATGACTATGAAGCACCATTTTTTTTGCTCGCTATCGCTATACGTAACC
CGCACCTCTCAAATTATCATTACTCAGATGCCTCCGTGAAGGACATGGAG
GCGGCGGCAGTGGCTTGGGCCGCAGAGCTGTATGCAGTGCCCTACTTTGC
TCTTAAGGTTGTGACAGACATTGGTAGGTACACCTTCTCATAGAAGAAGA
GCGGAAATTTCTAAATCCCACCAATTATTAGACTATGAAGTAGGATGTTT
CATTGTCTTGCTGACAACGTCTCCACTCATTCTCTCCCTTGCGCTCTCCG
TCATATATTCAACTTGTCCTGACTATCTTACAGTGGATGGGAAGCACGCC
ACCGAGGATGAGTTTGTGGCTAACTTTAGCATGGCTCAAAAGCAGCTACA
GAAATCCGTCCCCGCAGCTCTCGATTTTATTTTGGGCAAACGACTGGCGG
ACTTATGAGTAAGAGCATGCCTATGGGCTCTCGAAACATATTGGTTACAC
TGATTGATGGCATGCGCTCGCAACAACAAAGAAAGCAAATATGTCAATCA
ACAATAGAA

Coding sequence (CDS) from alignment at scaffold_2:719633..721591+

>mRNA_907 ID=mRNA_907|Name=jgi.p|Nanoce1779_2|574604|organism=Nannochloropsis oceanica|type=CDS|length=4410bp|location=Sequence derived from alignment at scaffold_2:719633..721591+ (Nannochloropsis oceanica)
ATGGAGGGGATCAAGTCCGTCGTCATTATTATCGCCATGGAAGCCGAAGC
CATGCCTCTCATCACGCACCTAGGCCTAACCCAGCAGTCCAATTACTTTG
GACATGCGGCACCTTTCCACTGCTTCAATGGCAAGTACAAGGGATATAAG
CTGGCCATTGTTACTAATGGGAAGGATCGCAAGTTTGGCTGTGACAATGT
CGGCACGGTCCCCGCAGCTCTGGCCACGTACCTGGCCGTGGAGTCTCTGA
AGCCAGACTTGCTCATCAACGCGGGAACCGCCGGCGGATTCGAGTCCAAA
GGCATGACAATCGGCGATGTACTAATTAGCAGCACAATCCATAACCACGA
TCGGCGCATGATTTTGCCCATATTTGTCGATTACGGCGTGCACAATCATA
CGGCGGTTGAGACTCCCCGCCTGCGCGAGGCATTGAAGTTCAAGCTGGGT
GTGGTGACCACTGGCAACTCTTTGGACCACGTCGAGGCCGATGACGCTCT
AATGGCAGCCAATGATGCCTCCGTGAAGGACATGGAGGCGGCGGCAGTGG
CTTGGGCCGCAGAGCTGTATGCAGTGCCCTACTTTGCTCTTAAGGTTGTG
ACAGACATTGTGGATGGGAAGCACGCCACCGAGGATGAGTTTGTGGCTAA
CTTTAGCATGGCTCAAAAGCAGCTACAGAAATCCGTCCCCGCAGCTCTCG
ATTTTATTTTGGGCAAACGACTGGCGGACTTATGAATGGAGGGGATCAAG
TCCGTCGTCATTATTATCGCCATGGAAGCCGAAGCCATGCCTCTCATCAC
GCACCTAGGCCTAACCCAGCAGTCCAATTACTTTGGACATGCGGCACCTT
TCCACTGCTTCAATGGCAAGTACAAGGGATATAAGCTGGCCATTGTTACT
AATGGGAAGGATCGCAAGTTTGGCTGTGACAATGTCGGCACGGTCCCCGC
AGCTCTGGCCACGTACCTGGCCGTGGAGTCTCTGAAGCCAGACTTGCTCA
TCAACGCGGGAACCGCCGGCGGATTCGAGTCCAAAGGCATGACAATCGGC
GATGTACTAATTAGCAGCACAATCCATAACCACGATCGGCGCATGATTTT
GCCCATATTTGTCGATTACGGCGTGCACAATCATACGGCGGTTGAGACTC
CCCGCCTGCGCGAGGCATTGAAGTTCAAGCTGGGTGTGGTGACCACTGGC
AACTCTTTGGACCACGTCGAGGCCGATGACGCTCTAATGGCAGCCAATGA
TGCCTCCGTGAAGGACATGGAGGCGGCGGCAGTGGCTTGGGCCGCAGAGC
TGTATGCAGTGCCCTACTTTGCTCTTAAGGTTGTGACAGACATTGTGGAT
GGGAAGCACGCCACCGAGGATGAGTTTGTGGCTAACTTTAGCATGGCTCA
AAAGCAGCTACAGAAATCCGTCCCCGCAGCTCTCGATTTTATTTTGGGCA
AACGACTGGCGGACTTATGAATGGAGGGGATCAAGTCCGTCGTCATTATT
ATCGCCATGGAAGCCGAAGCCATGCCTCTCATCACGCACCTAGGCCTAAC
CCAGCAGTCCAATTACTTTGGACATGCGGCACCTTTCCACTGCTTCAATG
GCAAGTACAAGGGATATAAGCTGGCCATTGTTACTAATGGGAAGGATCGC
AAGTTTGGCTGTGACAATGTCGGCACGGTCCCCGCAGCTCTGGCCACGTA
CCTGGCCGTGGAGTCTCTGAAGCCAGACTTGCTCATCAACGCGGGAACCG
CCGGCGGATTCGAGTCCAAAGGCATGACAATCGGCGATGTACTAATTAGC
AGCACAATCCATAACCACGATCGGCGCATGATTTTGCCCATATTTGTCGA
TTACGGCGTGCACAATCATACGGCGGTTGAGACTCCCCGCCTGCGCGAGG
CATTGAAGTTCAAGCTGGGTGTGGTGACCACTGGCAACTCTTTGGACCAC
GTCGAGGCCGATGACGCTCTAATGGCAGCCAATGATGCCTCCGTGAAGGA
CATGGAGGCGGCGGCAGTGGCTTGGGCCGCAGAGCTGTATGCAGTGCCCT
ACTTTGCTCTTAAGGTTGTGACAGACATTGTGGATGGGAAGCACGCCACC
GAGGATGAGTTTGTGGCTAACTTTAGCATGGCTCAAAAGCAGCTACAGAA
ATCCGTCCCCGCAGCTCTCGATTTTATTTTGGGCAAACGACTGGCGGACT
TATGAATGGAGGGGATCAAGTCCGTCGTCATTATTATCGCCATGGAAGCC
GAAGCCATGCCTCTCATCACGCACCTAGGCCTAACCCAGCAGTCCAATTA
CTTTGGACATGCGGCACCTTTCCACTGCTTCAATGGCAAGTACAAGGGAT
ATAAGCTGGCCATTGTTACTAATGGGAAGGATCGCAAGTTTGGCTGTGAC
AATGTCGGCACGGTCCCCGCAGCTCTGGCCACGTACCTGGCCGTGGAGTC
TCTGAAGCCAGACTTGCTCATCAACGCGGGAACCGCCGGCGGATTCGAGT
CCAAAGGCATGACAATCGGCGATGTACTAATTAGCAGCACAATCCATAAC
CACGATCGGCGCATGATTTTGCCCATATTTGTCGATTACGGCGTGCACAA
TCATACGGCGGTTGAGACTCCCCGCCTGCGCGAGGCATTGAAGTTCAAGC
TGGGTGTGGTGACCACTGGCAACTCTTTGGACCACGTCGAGGCCGATGAC
GCTCTAATGGCAGCCAATGATGCCTCCGTGAAGGACATGGAGGCGGCGGC
AGTGGCTTGGGCCGCAGAGCTGTATGCAGTGCCCTACTTTGCTCTTAAGG
TTGTGACAGACATTGTGGATGGGAAGCACGCCACCGAGGATGAGTTTGTG
GCTAACTTTAGCATGGCTCAAAAGCAGCTACAGAAATCCGTCCCCGCAGC
TCTCGATTTTATTTTGGGCAAACGACTGGCGGACTTATGAATGGAGGGGA
TCAAGTCCGTCGTCATTATTATCGCCATGGAAGCCGAAGCCATGCCTCTC
ATCACGCACCTAGGCCTAACCCAGCAGTCCAATTACTTTGGACATGCGGC
ACCTTTCCACTGCTTCAATGGCAAGTACAAGGGATATAAGCTGGCCATTG
TTACTAATGGGAAGGATCGCAAGTTTGGCTGTGACAATGTCGGCACGGTC
CCCGCAGCTCTGGCCACGTACCTGGCCGTGGAGTCTCTGAAGCCAGACTT
GCTCATCAACGCGGGAACCGCCGGCGGATTCGAGTCCAAAGGCATGACAA
TCGGCGATGTACTAATTAGCAGCACAATCCATAACCACGATCGGCGCATG
ATTTTGCCCATATTTGTCGATTACGGCGTGCACAATCATACGGCGGTTGA
GACTCCCCGCCTGCGCGAGGCATTGAAGTTCAAGCTGGGTGTGGTGACCA
CTGGCAACTCTTTGGACCACGTCGAGGCCGATGACGCTCTAATGGCAGCC
AATGATGCCTCCGTGAAGGACATGGAGGCGGCGGCAGTGGCTTGGGCCGC
AGAGCTGTATGCAGTGCCCTACTTTGCTCTTAAGGTTGTGACAGACATTG
TGGATGGGAAGCACGCCACCGAGGATGAGTTTGTGGCTAACTTTAGCATG
GCTCAAAAGCAGCTACAGAAATCCGTCCCCGCAGCTCTCGATTTTATTTT
GGGCAAACGACTGGCGGACTTATGAATGGAGGGGATCAAGTCCGTCGTCA
TTATTATCGCCATGGAAGCCGAAGCCATGCCTCTCATCACGCACCTAGGC
CTAACCCAGCAGTCCAATTACTTTGGACATGCGGCACCTTTCCACTGCTT
CAATGGCAAGTACAAGGGATATAAGCTGGCCATTGTTACTAATGGGAAGG
ATCGCAAGTTTGGCTGTGACAATGTCGGCACGGTCCCCGCAGCTCTGGCC
ACGTACCTGGCCGTGGAGTCTCTGAAGCCAGACTTGCTCATCAACGCGGG
AACCGCCGGCGGATTCGAGTCCAAAGGCATGACAATCGGCGATGTACTAA
TTAGCAGCACAATCCATAACCACGATCGGCGCATGATTTTGCCCATATTT
GTCGATTACGGCGTGCACAATCATACGGCGGTTGAGACTCCCCGCCTGCG
CGAGGCATTGAAGTTCAAGCTGGGTGTGGTGACCACTGGCAACTCTTTGG
ACCACGTCGAGGCCGATGACGCTCTAATGGCAGCCAATGATGCCTCCGTG
AAGGACATGGAGGCGGCGGCAGTGGCTTGGGCCGCAGAGCTGTATGCAGT
GCCCTACTTTGCTCTTAAGGTTGTGACAGACATTGTGGATGGGAAGCACG
CCACCGAGGATGAGTTTGTGGCTAACTTTAGCATGGCTCAAAAGCAGCTA
CAGAAATCCGTCCCCGCAGCTCTCGATTTTATTTTGGGCAAACGACTGGC
GGACTTATGA

Synonyms

Publications