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Properties
| Property Name | Value |
|---|
| TranscriptId | 574678 |
| Track | FilteredModels2 |
| ProteinId | 574592 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:714179..716642 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_905 ID=mRNA_905|Name=jgi.p|Nanoce1779_2|574592|organism=Nannochloropsis oceanica|type=mRNA|length=1756bp
CAAAAGTTACAGGTGCTAGGTGCGGTACCTGGATCGCCATCTCCTACTCC
TATTTCTGTAGCCTGTCTCCTACCTCTCCCGCCTCCCAACTCCACAAGCA
TTATGGCCCCCGTGGGCGCGACGGCATGGCAAAAGGGCGGCTCGGCGCTA
CTGTACGGGAGCGCCTCCCTCTCCATCATGGTCATCAACAAGGTCGTCCT
AACAATCTACCACTTCCCTTCCTTCGCCTTCCTGGCCGCCTGTCAATTCC
TGTTCACTACCCTCGTCATTTTCTGTCTGAAAGTCGTCGGACGCGTGCAA
GTCACGGCCATGTCCTGGGAGGTTTTGCGCGTCATGGCGCCACTCGTGAT
CATCTCCCTCGTCAACGTCTTGTCCGGCCTAGGTGGTACGCAAAAGATCT
CCTTGCCCATGTTTACGGCCCTGCGTCGATTTTCCATATTGATGACGATG
CTGCTTGAAGCATATGTTTTTGGCACCAGACCGTCGGTGGCCGTGAAATT
AAGTGTGTTCCTCATGATTTTTGGGGCCCTCGTGGCGGCGCTTTCCGACT
TGACGTTCGACACAGTGGGGTACTTCATGATTTTTTTGTCGGATTTGTTT
ACGGCTTTGAATGGGGTGGTGATGAAGAGGACGCTGACTGCTTGCCCTTC
TGTCAACAAGATGGCAGTTCTGTACTATAACAGTCTGTTTGGCGTAATAA
TCATGGTGGGGTTGCTGAGCACGCGAGAAGAAGAGATGGAGGCTGTTCGA
AGCTTTACTCATTGGAATGAGCCCCGATTTCTGCTCTCCTTCTGCCTTGC
TGCCGGCATGGGCTCCATCCTCAACTACTCCATTTTCCTCTGCACCCTAT
ACAATAGTGCGCTCACCACCACTGTCGTTGGCTGTCTCAAGAACATCTTG
ACCACGTACATTGGCATGATCTTCATGAGTGACTATATCTTCTCGTGGGA
GAACTTCGTGGGCTTGCACATCTCCATTGTTGGTTCCTTGGTCTACTCGT
TCGTTGAGCTCCAGTCCATCCTCAAGGGCAGAGAGGTATGAAGTGAGGGA
ATGAAAGAGGATTGGGTATGCTGATAGTTTCCCTTTGGGAGAAATGGTTG
AAGAGAGGGGTAGGTGCGGGCCCTTTCCTGCTGAGGTGGTTTCGGTCCTC
CACTACCTTTTCCTCCTTTCACGAACCCCTTGTCATTCCACTCTTCTTTT
TTCCACAGCGAGCAGTCATGGACATGAAAAGCCGTAAGCACGCGGGAGGG
CGCATTCACGTGCCCGTGGGCGGCGGCAAGGGGGCGAGCAAGCGGGAAGC
AGAGCTGGTGCGTCTGCTCGACCAGCGGCCGCCTTCGGGTGGCGGCAACA
CAGGACCCGAGGAGAAAGAAGACGCTGTTTTGGTCTAACGGCGACTTTCT
CTTCTTAATGGCCCTCCCCTTTCCACCTTTTTTTCGGTTTTCCCGTTCGA
TGCTTCATATTTGTCCTGCCCCGAACATCCAAATAGTATTTTAAAAACTC
TGAACCAAAGCGAATGGAAGACTAAAATCACAAAGAATCAGTGTGTTTTG
GGGCGAGAGGCCGTGAGAGAGGGAACAAGGACTGTAAGATGTTATGGAAG
TGTACATCAGTCAAAAATAAAAAAATAGAGGTAGACAACCCTAGATCCGC
CTTCGCCCCTCCGACCTCCTGGGATCCGAATTAGCAGACCCAATCAAAAC
GTCCCGCCACAAAGACGAAAAGAGCAGGAGAAAAAGAATAAAAGTACCAT
GTGACA back to topprotein sequence of jgi.p|Nanoce1779_2|574592 >mRNA_905-protein ID=mRNA_905-protein|Name=jgi.p|Nanoce1779_2|574592|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MAPVGATAWQKGGSALLYGSASLSIMVINKVVLTIYHFPSFAFLAACQFL
FTTLVIFCLKVVGRVQVTAMSWEVLRVMAPLVIISLVNVLSGLGGTQKIS
LPMFTALRRFSILMTMLLEAYVFGTRPSVAVKLSVFLMIFGALVAALSDL
TFDTVGYFMIFLSDLFTALNGVVMKRTLTACPSVNKMAVLYYNSLFGVII
MVGLLSTREEEMEAVRSFTHWNEPRFLLSFCLAAGMGSILNYSIFLCTLY
NSALTTTVVGCLKNILTTYIGMIFMSDYIFSWENFVGLHISIVGSLVYSF
VELQSILKGREV* back to topmRNA from alignment at scaffold_2:714179..716642+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_905 ID=mRNA_905|Name=jgi.p|Nanoce1779_2|574592|organism=Nannochloropsis oceanica|type=mRNA|length=2464bp|location=Sequence derived from alignment at scaffold_2:714179..716642+ (Nannochloropsis oceanica)
CAAAAGTTACAGGTGCTAGGTGCGGTACCTGGATCGCCATCTCCTACTCC
TATTTCTGTAGCCTGTCTCCTACCTCTCCCGCCTCCCAACTCCACAAGCA
TTATGGCCCCCGTGGGCGCGACGGCATGGCAAAAGGGCGGCTCGGCGCTA
CTGTACGGGAGCGCCTCCCTCTCCATCATGGTCATCAACAAGGTATGTAC
GTGTCTAAGAGCTCGGATTGACGCTGGACGGGCAGCTAGGAGTGGTTGAA
ACGAAAAGCAGGATGGCGTGGGCGTCGTGTGCAAGCTCCGGAGCTTCTCG
TCGAAGCACGACGGAGCCTGCCCAAAGCCGATGCGGCTGCTCCATACTGT
TGAAACGTGCAGAGTAGAGGTCGAAGGGGGCTTCTTCGTTTTGAGCCGGC
GGACAACGGCTTCATCGAGCGCTTACGATCCACTGGCTGCGCCCGATGGG
GCATGCCGCATCCTCTCCTGATCTTCACAAGGCTATTTACGTATGCATTG
CTTTCTGTTGAAAAGCTTGCCATAAATCTTGCGTGTTCATTCCTAGATCT
GTGTCGATCATGCCTTTCTGAACACTAACATGAATCACGCTTATAACACC
TTGCTCCTTCCCTCCCTCGGGCTAGGTCGTCCTAACAATCTACCACTTCC
CTTCCTTCGCCTTCCTGGCCGCCTGTCAATTCCTGTTCACTACCCTCGTC
ATTTTCTGTCTGAAAGTCGTCGGACGCGTGCAAGTCACGGCCATGTCCTG
GGAGGTTTTGCGCGTCATGGCGCCACTCGTGATCATCTCCCTCGTCAACG
TCTTGTCCGGCCTAGGTGGTACGCAAAAGATCTCCTTGCCCATGTTTACG
GCCCTGCGTCGATTTTCCATATTGATGACGATGCTGCTTGAAGCATATGT
TTTTGGCACCAGACCGTCGGTGGCCGTGAAATTAAGTGTGTTCCTCATGA
TTTTTGGGGCCCTCGTGGCGGCGCTTTCCGACTTGACGTTCGACACAGTG
GGGTACTTCATGATTTTTTTGTCGGATTTGTTTACGGCTTTGAATGGGGT
GGTGATGAAGAGGACGCTGACTGCTTGCCCTTCTGTCAACAAGATGGCAG
TTCTGTACTATAACAGTCTGTTTGGGTAGGTGACGAAAGGAGGGAGGGGG
AGGAAAGGGGTGAGGGGGAGGACCTTGCTTCACGACGAAGCTAATTACGT
AGAGACGGGTATTCGTCTGTCTCTTACCACATTCTTCACTTCCCGTCTTC
ATTTGAACACCTTTTCCGTCGCTCACAGCGTAATAATCATGGTGGGGTTG
CTGAGCACGCGAGAAGAAGAGATGGAGGCTGTTCGAAGCTTTACTCATTG
GAATGAGCCCCGATTTCTGCTCTCCTTCTGCCTTGCTGCCGGCATGGGCT
CCATCCTCAACTACTCCATTTTCCTCTGCACCCTATACAATAGTGCGCTC
ACCACCACTGTCGTTGGCTGTCTCAAGGTAACTAAAGCCCCTTTCTCCCT
CTGATATTTTTTTCTCATCTCACACTACATCTATGGGCGTCAAATATTCA
TCTACCTACACACCTCCCTCCCTCCTCCCTCCCTCCCTCCCCCCTGAAGA
ACATCTTGACCACGTACATTGGCATGATCTTCATGAGTGACTATATCTTC
TCGTGGGAGAACTTCGTGGGCTTGCACATCTCCATTGTTGGTTCCTTGGT
CTACTCGTTCGTTGAGCTCCAGTCCATCCTCAAGGGCAGAGAGGTATGAA
GTGAGGGAATGAAAGAGGATTGGGTATGCTGATAGTTTCCCTTTGGGAGA
AATGGTTGAAGAGAGGGGTAGGTGCGGGCCCTTTCCTGCTGAGGTGGTTT
CGGTCCTCCACTACCTTTTCCTCCTTTCACGAACCCCTTGTCATTCCACT
CTTCTTTTTTCCACAGCGAGCAGTCATGGACATGAAAAGCCGTAAGCACG
CGGGAGGGCGCATTCACGTGCCCGTGGGCGGCGGCAAGGGGGCGAGCAAG
CGGGAAGCAGAGCTGGTGCGTCTGCTCGACCAGCGGCCGCCTTCGGGTGG
CGGCAACACAGGACCCGAGGAGAAAGAAGACGCTGTTTTGGTCTAACGGC
GACTTTCTCTTCTTAATGGCCCTCCCCTTTCCACCTTTTTTTCGGTTTTC
CCGTTCGATGCTTCATATTTGTCCTGCCCCGAACATCCAAATAGTATTTT
AAAAACTCTGAACCAAAGCGAATGGAAGACTAAAATCACAAAGAATCAGT
GTGTTTTGGGGCGAGAGGCCGTGAGAGAGGGAACAAGGACTGTAAGATGT
TATGGAAGTGTACATCAGTCAAAAATAAAAAAATAGAGGTAGACAACCCT
AGATCCGCCTTCGCCCCTCCGACCTCCTGGGATCCGAATTAGCAGACCCA
ATCAAAACGTCCCGCCACAAAGACGAAAAGAGCAGGAGAAAAAGAATAAA
AGTACCATGTGACA back to topCoding sequence (CDS) from alignment at scaffold_2:714179..716642+ >mRNA_905 ID=mRNA_905|Name=jgi.p|Nanoce1779_2|574592|organism=Nannochloropsis oceanica|type=CDS|length=3756bp|location=Sequence derived from alignment at scaffold_2:714179..716642+ (Nannochloropsis oceanica)
ATGGCCCCCGTGGGCGCGACGGCATGGCAAAAGGGCGGCTCGGCGCTACT
GTACGGGAGCGCCTCCCTCTCCATCATGGTCATCAACAAGGTCGTCCTAA
CAATCTACCACTTCCCTTCCTTCGCCTTCCTGGCCGCCTGTCAATTCCTG
TTCACTACCCTCGTCATTTTCTGTCTGAAAGTCGTCGGACGCGTGCAAGT
CACGGCCATGTCCTGGGAGGTTTTGCGCGTCATGGCGCCACTCGTGATCA
TCTCCCTCGTCAACGTCTTGTCCGGCCTAGGTGGTACGCAAAAGATCTCC
TTGCCCATGTTTACGGCCCTGCGTCGATTTTCCATATTGATGACGATGCT
GCTTGAAGCATATGTTTTTGGCACCAGACCGTCGGTGGCCGTGAAATTAA
GTGTGTTCCTCATGATTTTTGGGGCCCTCGTGGCGGCGCTTTCCGACTTG
ACGTTCGACACAGTGGGGTACTTCATGATTTTTTTGTCGGATTTGTTTAC
GGCTTTGAATGGGGTGGTGATGAAGAGGACGCTGACTGCTTGCCCTTCTG
TCAACAAGATGGCAGTTCTGTACTATAACAGTCTGTTTGGCGTAATAATC
ATGGTGGGGTTGCTGAGCACGCGAGAAGAAGAGATGGAGGCTGTTCGAAG
CTTTACTCATTGGAATGAGCCCCGATTTCTGCTCTCCTTCTGCCTTGCTG
CCGGCATGGGCTCCATCCTCAACTACTCCATTTTCCTCTGCACCCTATAC
AATAGTGCGCTCACCACCACTGTCGTTGGCTGTCTCAAGAACATCTTGAC
CACGTACATTGGCATGATCTTCATGAGTGACTATATCTTCTCGTGGGAGA
ACTTCGTGGGCTTGCACATCTCCATTGTTGGTTCCTTGGTCTACTCGTTC
GTTGAGCTCCAGTCCATCCTCAAGGGCAGAGAGGTATGAATGGCCCCCGT
GGGCGCGACGGCATGGCAAAAGGGCGGCTCGGCGCTACTGTACGGGAGCG
CCTCCCTCTCCATCATGGTCATCAACAAGGTCGTCCTAACAATCTACCAC
TTCCCTTCCTTCGCCTTCCTGGCCGCCTGTCAATTCCTGTTCACTACCCT
CGTCATTTTCTGTCTGAAAGTCGTCGGACGCGTGCAAGTCACGGCCATGT
CCTGGGAGGTTTTGCGCGTCATGGCGCCACTCGTGATCATCTCCCTCGTC
AACGTCTTGTCCGGCCTAGGTGGTACGCAAAAGATCTCCTTGCCCATGTT
TACGGCCCTGCGTCGATTTTCCATATTGATGACGATGCTGCTTGAAGCAT
ATGTTTTTGGCACCAGACCGTCGGTGGCCGTGAAATTAAGTGTGTTCCTC
ATGATTTTTGGGGCCCTCGTGGCGGCGCTTTCCGACTTGACGTTCGACAC
AGTGGGGTACTTCATGATTTTTTTGTCGGATTTGTTTACGGCTTTGAATG
GGGTGGTGATGAAGAGGACGCTGACTGCTTGCCCTTCTGTCAACAAGATG
GCAGTTCTGTACTATAACAGTCTGTTTGGCGTAATAATCATGGTGGGGTT
GCTGAGCACGCGAGAAGAAGAGATGGAGGCTGTTCGAAGCTTTACTCATT
GGAATGAGCCCCGATTTCTGCTCTCCTTCTGCCTTGCTGCCGGCATGGGC
TCCATCCTCAACTACTCCATTTTCCTCTGCACCCTATACAATAGTGCGCT
CACCACCACTGTCGTTGGCTGTCTCAAGAACATCTTGACCACGTACATTG
GCATGATCTTCATGAGTGACTATATCTTCTCGTGGGAGAACTTCGTGGGC
TTGCACATCTCCATTGTTGGTTCCTTGGTCTACTCGTTCGTTGAGCTCCA
GTCCATCCTCAAGGGCAGAGAGGTATGAATGGCCCCCGTGGGCGCGACGG
CATGGCAAAAGGGCGGCTCGGCGCTACTGTACGGGAGCGCCTCCCTCTCC
ATCATGGTCATCAACAAGGTCGTCCTAACAATCTACCACTTCCCTTCCTT
CGCCTTCCTGGCCGCCTGTCAATTCCTGTTCACTACCCTCGTCATTTTCT
GTCTGAAAGTCGTCGGACGCGTGCAAGTCACGGCCATGTCCTGGGAGGTT
TTGCGCGTCATGGCGCCACTCGTGATCATCTCCCTCGTCAACGTCTTGTC
CGGCCTAGGTGGTACGCAAAAGATCTCCTTGCCCATGTTTACGGCCCTGC
GTCGATTTTCCATATTGATGACGATGCTGCTTGAAGCATATGTTTTTGGC
ACCAGACCGTCGGTGGCCGTGAAATTAAGTGTGTTCCTCATGATTTTTGG
GGCCCTCGTGGCGGCGCTTTCCGACTTGACGTTCGACACAGTGGGGTACT
TCATGATTTTTTTGTCGGATTTGTTTACGGCTTTGAATGGGGTGGTGATG
AAGAGGACGCTGACTGCTTGCCCTTCTGTCAACAAGATGGCAGTTCTGTA
CTATAACAGTCTGTTTGGCGTAATAATCATGGTGGGGTTGCTGAGCACGC
GAGAAGAAGAGATGGAGGCTGTTCGAAGCTTTACTCATTGGAATGAGCCC
CGATTTCTGCTCTCCTTCTGCCTTGCTGCCGGCATGGGCTCCATCCTCAA
CTACTCCATTTTCCTCTGCACCCTATACAATAGTGCGCTCACCACCACTG
TCGTTGGCTGTCTCAAGAACATCTTGACCACGTACATTGGCATGATCTTC
ATGAGTGACTATATCTTCTCGTGGGAGAACTTCGTGGGCTTGCACATCTC
CATTGTTGGTTCCTTGGTCTACTCGTTCGTTGAGCTCCAGTCCATCCTCA
AGGGCAGAGAGGTATGAATGGCCCCCGTGGGCGCGACGGCATGGCAAAAG
GGCGGCTCGGCGCTACTGTACGGGAGCGCCTCCCTCTCCATCATGGTCAT
CAACAAGGTCGTCCTAACAATCTACCACTTCCCTTCCTTCGCCTTCCTGG
CCGCCTGTCAATTCCTGTTCACTACCCTCGTCATTTTCTGTCTGAAAGTC
GTCGGACGCGTGCAAGTCACGGCCATGTCCTGGGAGGTTTTGCGCGTCAT
GGCGCCACTCGTGATCATCTCCCTCGTCAACGTCTTGTCCGGCCTAGGTG
GTACGCAAAAGATCTCCTTGCCCATGTTTACGGCCCTGCGTCGATTTTCC
ATATTGATGACGATGCTGCTTGAAGCATATGTTTTTGGCACCAGACCGTC
GGTGGCCGTGAAATTAAGTGTGTTCCTCATGATTTTTGGGGCCCTCGTGG
CGGCGCTTTCCGACTTGACGTTCGACACAGTGGGGTACTTCATGATTTTT
TTGTCGGATTTGTTTACGGCTTTGAATGGGGTGGTGATGAAGAGGACGCT
GACTGCTTGCCCTTCTGTCAACAAGATGGCAGTTCTGTACTATAACAGTC
TGTTTGGCGTAATAATCATGGTGGGGTTGCTGAGCACGCGAGAAGAAGAG
ATGGAGGCTGTTCGAAGCTTTACTCATTGGAATGAGCCCCGATTTCTGCT
CTCCTTCTGCCTTGCTGCCGGCATGGGCTCCATCCTCAACTACTCCATTT
TCCTCTGCACCCTATACAATAGTGCGCTCACCACCACTGTCGTTGGCTGT
CTCAAGAACATCTTGACCACGTACATTGGCATGATCTTCATGAGTGACTA
TATCTTCTCGTGGGAGAACTTCGTGGGCTTGCACATCTCCATTGTTGGTT
CCTTGGTCTACTCGTTCGTTGAGCTCCAGTCCATCCTCAAGGGCAGAGAG
GTATGA back to top
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