jgi.p|Nanoce1779_2|568954, mRNA_9044 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568954
Unique NamemRNA_9044
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1023
Alignment locationscaffold_30:294127..295285 -

Link to JBrowse

Properties
Property NameValue
TranscriptId569040
TrackFilteredModels2
ProteinId568954
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:294127..295285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568954gene_9044Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568954mRNA_9044-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9044CDS_9044Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9044 ID=mRNA_9044|Name=jgi.p|Nanoce1779_2|568954|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp
ATGGCGACGGGTGGGAAGCTTCTTGCCTACCTTGATCGGTTTTGGATCAC
CAAGCACCATCATAAGAAAGGGGTTGATCCCTGCCAGGGCGTTATGTTTA
TCTCGGAGCTTGTCCCACTAATTTGGCGGCAACGTGTGTTGAGGCGAAAT
ATTTCTGTCTTGCTTCAACGTTTCTACAAGCAGCAGCTGGAGGACCATTT
GCTGAAGGAAGTGTATTTGCACTACGTTGAGAGGGCGGGGGCGTTTGCGG
CCCATGTCTCGGCGGGAAAGGTGGATGAGACAGCTGTTGCGGAGTACATT
CGTGGTGTCCAACGGTGTGTGCAAGTGGAGGAGGCGATTTGGGAGCCTGT
GAACCCATCGACGTCGCGAGGGGCGGTGAGGGTGGTGAGGAAAAGTATGT
TAGAGAGTGAGCCGCATCATCAGATTCTGATGGCTTTCGCGCAGGCGGCG
CTGGCTTTTCGGGCGGAGCGATTGGCGGATTTGGAGTTGCTGTATCGCCT
GTTGGACAATGACGATGTGGACCCGAGTAAGGGGATCGAGGCTTTAAGGG
AGATCTTTTTTGGGTTTGTCAAGGAGGTGGGGGCGAGGGAGGTGAAGAGG
GCGAATGAGGAGGGGCGGCATCGACAGGCGTCACCCATACGTCCCGATAT
GAGCCATATGCTGGCTCGGTCGAGCTTACCGGCCGACTACGTGTGTTCGG
ATGCGATTCAGATGATGCTTGATCTCTATTCCCATTATCTCACCCTGGTT
CGTGTCACCTTTCAGGATGACGCTCGTTTCTCCAAGGCCTTCAAGAAGGC
GTGTGAGCATTTCATTAATGCTCTGCCTAACATGTCGGAGTCTTTGGCGA
TTCACGCCCACTATTTTCTGGACAAGAATTGTCCGGAGTCACGAGGAACG
GAGAGCATTGATATTGCCCTCGATAGCATTATCTTGCTCTTTAACTTCAT
TCAGGACAAGGATTTGTTTCACCGGTCCTACGCCGATTGCTCGCCGCGAG
AATCATCAGTTTCTCGTCCGTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|568954

>mRNA_9044-protein ID=mRNA_9044-protein|Name=jgi.p|Nanoce1779_2|568954|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MATGGKLLAYLDRFWITKHHHKKGVDPCQGVMFISELVPLIWRQRVLRRN
ISVLLQRFYKQQLEDHLLKEVYLHYVERAGAFAAHVSAGKVDETAVAEYI
RGVQRCVQVEEAIWEPVNPSTSRGAVRVVRKSMLESEPHHQILMAFAQAA
LAFRAERLADLELLYRLLDNDDVDPSKGIEALREIFFGFVKEVGAREVKR
ANEEGRHRQASPIRPDMSHMLARSSLPADYVCSDAIQMMLDLYSHYLTLV
RVTFQDDARFSKAFKKACEHFINALPNMSESLAIHAHYFLDKNCPESRGT
ESIDIALDSIILLFNFIQDKDLFHRSYADCSPRESSVSRP*
back to top

mRNA from alignment at scaffold_30:294127..295285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9044 ID=mRNA_9044|Name=jgi.p|Nanoce1779_2|568954|organism=Nannochloropsis oceanica|type=mRNA|length=1159bp|location=Sequence derived from alignment at scaffold_30:294127..295285- (Nannochloropsis oceanica)
ATGGCGACGGGTGGGAAGCTTCTTGCCTACCTTGATCGGTTTTGGATCAC
CAAGCACCATCATAAGAAAGGGGTTGATCCCTGCCAGGGCGTTATGTTTA
TCTCGGAGCTTGTCCCACTAATTTGGCGGCAACGTGTGTTGAGGCGAAAT
ATTTCTGTCTTGCTTCAACGTGCGTTCAATGCTGTAGTTGCTGACTTGCG
CGAAGACCCTGCCGGACCTTCCCCTGAATACCTCGAAGTTCTTACGGCGT
GTGGTGGCTTCCTTCGTAGACCTGGGCACAACGCTCGAGCCTCTTCATCC
TGTAGGTTTCTACAAGCAGCAGCTGGAGGACCATTTGCTGAAGGAAGTGT
ATTTGCACTACGTTGAGAGGGCGGGGGCGTTTGCGGCCCATGTCTCGGCG
GGAAAGGTGGATGAGACAGCTGTTGCGGAGTACATTCGTGGTGTCCAACG
GTGTGTGCAAGTGGAGGAGGCGATTTGGGAGCCTGTGAACCCATCGACGT
CGCGAGGGGCGGTGAGGGTGGTGAGGAAAAGTATGTTAGAGAGTGAGCCG
CATCATCAGATTCTGATGGCTTTCGCGCAGGCGGCGCTGGCTTTTCGGGC
GGAGCGATTGGCGGATTTGGAGTTGCTGTATCGCCTGTTGGACAATGACG
ATGTGGACCCGAGTAAGGGGATCGAGGCTTTAAGGGAGATCTTTTTTGGG
TTTGTCAAGGAGGTGGGGGCGAGGGAGGTGAAGAGGGCGAATGAGGAGGG
GCGGCATCGACAGGCGTCACCCATACGTCCCGATATGAGCCATATGCTGG
CTCGGTCGAGCTTACCGGCCGACTACGTGTGTTCGGATGCGATTCAGATG
ATGCTTGATCTCTATTCCCATTATCTCACCCTGGTTCGTGTCACCTTTCA
GGATGACGCTCGTTTCTCCAAGGCCTTCAAGAAGGCGTGTGAGCATTTCA
TTAATGCTCTGCCTAACATGTCGGAGTCTTTGGCGATTCACGCCCACTAT
TTTCTGGACAAGAATTGTCCGGAGTCACGAGGAACGGAGAGCATTGATAT
TGCCCTCGATAGCATTATCTTGCTCTTTAACTTCATTCAGGACAAGGATT
TGTTTCACCGGTCCTACGCCGATTGCTCGCCGCGAGAATCATCAGTTTCT
CGTCCGTGA
back to top

Coding sequence (CDS) from alignment at scaffold_30:294127..295285-

>mRNA_9044 ID=mRNA_9044|Name=jgi.p|Nanoce1779_2|568954|organism=Nannochloropsis oceanica|type=CDS|length=2046bp|location=Sequence derived from alignment at scaffold_30:294127..295285- (Nannochloropsis oceanica)
GTTTCTACAAGCAGCAGCTGGAGGACCATTTGCTGAAGGAAGTGTATTTG
CACTACGTTGAGAGGGCGGGGGCGTTTGCGGCCCATGTCTCGGCGGGAAA
GGTGGATGAGACAGCTGTTGCGGAGTACATTCGTGGTGTCCAACGGTGTG
TGCAAGTGGAGGAGGCGATTTGGGAGCCTGTGAACCCATCGACGTCGCGA
GGGGCGGTGAGGGTGGTGAGGAAAAGTATGTTAGAGAGTGAGCCGCATCA
TCAGATTCTGATGGCTTTCGCGCAGGCGGCGCTGGCTTTTCGGGCGGAGC
GATTGGCGGATTTGGAGTTGCTGTATCGCCTGTTGGACAATGACGATGTG
GACCCGAGTAAGGGGATCGAGGCTTTAAGGGAGATCTTTTTTGGGTTTGT
CAAGGAGGTGGGGGCGAGGGAGGTGAAGAGGGCGAATGAGGAGGGGCGGC
ATCGACAGGCGTCACCCATACGTCCCGATATGAGCCATATGCTGGCTCGG
TCGAGCTTACCGGCCGACTACGTGTGTTCGGATGCGATTCAGATGATGCT
TGATCTCTATTCCCATTATCTCACCCTGGTTCGTGTCACCTTTCAGGATG
ACGCTCGTTTCTCCAAGGCCTTCAAGAAGGCGTGTGAGCATTTCATTAAT
GCTCTGCCTAACATGTCGGAGTCTTTGGCGATTCACGCCCACTATTTTCT
GGACAAGAATTGTCCGGAGTCACGAGGAACGGAGAGCATTGATATTGCCC
TCGATAGCATTATCTTGCTCTTTAACTTCATTCAGGACAAGGATTTGTTT
CACCGGTCCTACGCCGATTGCTCGCCGCGAGAATCATCAGTTTCTCGTCC
GTGAATGGCGACGGGTGGGAAGCTTCTTGCCTACCTTGATCGGTTTTGGA
TCACCAAGCACCATCATAAGAAAGGGGTTGATCCCTGCCAGGGCGTTATG
TTTATCTCGGAGCTTGTCCCACTAATTTGGCGGCAACGTGTGTTGAGGCG
AAATATTTCTGTCTTGCTTCAACGTTTCTACAAGCAGCAGCTGGAGGACC
ATTTGCTGAAGGAAGTGTATTTGCACTACGTTGAGAGGGCGGGGGCGTTT
GCGGCCCATGTCTCGGCGGGAAAGGTGGATGAGACAGCTGTTGCGGAGTA
CATTCGTGGTGTCCAACGGTGTGTGCAAGTGGAGGAGGCGATTTGGGAGC
CTGTGAACCCATCGACGTCGCGAGGGGCGGTGAGGGTGGTGAGGAAAAGT
ATGTTAGAGAGTGAGCCGCATCATCAGATTCTGATGGCTTTCGCGCAGGC
GGCGCTGGCTTTTCGGGCGGAGCGATTGGCGGATTTGGAGTTGCTGTATC
GCCTGTTGGACAATGACGATGTGGACCCGAGTAAGGGGATCGAGGCTTTA
AGGGAGATCTTTTTTGGGTTTGTCAAGGAGGTGGGGGCGAGGGAGGTGAA
GAGGGCGAATGAGGAGGGGCGGCATCGACAGGCGTCACCCATACGTCCCG
ATATGAGCCATATGCTGGCTCGGTCGAGCTTACCGGCCGACTACGTGTGT
TCGGATGCGATTCAGATGATGCTTGATCTCTATTCCCATTATCTCACCCT
GGTTCGTGTCACCTTTCAGGATGACGCTCGTTTCTCCAAGGCCTTCAAGA
AGGCGTGTGAGCATTTCATTAATGCTCTGCCTAACATGTCGGAGTCTTTG
GCGATTCACGCCCACTATTTTCTGGACAAGAATTGTCCGGAGTCACGAGG
AACGGAGAGCATTGATATTGCCCTCGATAGCATTATCTTGCTCTTTAACT
TCATTCAGGACAAGGATTTGTTTCACCGGTCCTACGCCGATTGCTCGCCG
CGAGAATCATCAGTTTCTCGTCCGTGAATGGCGACGGGTGGGAAGCTTCT
TGCCTACCTTGATCGGTTTTGGATCACCAAGCACCATCATAAGAAAGGGG
TTGATCCCTGCCAGGGCGTTATGTTTATCTCGGAGCTTGTCCCACTAATT
TGGCGGCAACGTGTGTTGAGGCGAAATATTTCTGTCTTGCTTCAAC
back to top
Synonyms
Publications