jgi.p|Nanoce1779_2|605047, mRNA_9043 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605047
Unique NamemRNA_9043
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1275
Alignment locationscaffold_30:292085..293359 -

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Properties
Property NameValue
TranscriptId605133
TrackFilteredModels2
ProteinId605047
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:292085..293359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605047gene_9043Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605047mRNA_9043-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9043CDS_9043Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9043 ID=mRNA_9043|Name=jgi.p|Nanoce1779_2|605047|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp
CTCGTGGTCGCATTCCGTGTTGGACGCTCCGCACATGAAGCAACAGCGGC
AGGGAGGAGCCGAGCAAGAGGTGGAATTTTTCGCGTTCATTTTGACGGGT
GGCTCGTGGCCGTACCCTTCCACAGGACCCTTGATGGAGCTCCCTGCCCC
CCTGGCCCGGTGCGTTGAATCTTTTTCCAACTTCTACGACGCTAAATACA
AGCGACGGCGCTTGACCTGGCTGCATGACCTGGGCCACGGGGAGGTGCTT
TTCCACTGCCCAGCCACTGCTCGGGACTACACGCTCCTCGTTTCTACCTC
CCAAATCTGTATCTTACTCCTTTTCAACGCCCGCCCCGCCTGGAGTGTCA
AGGAGCTCCTCCAAGCCCTCGACTTGGATTTCGCCGAGCTCGTCCTCTGC
CTCTACCCTCTCCTGCGATCCCAAGTCCTGGTCAGTGCGCCTCAAGTAGC
TCTTGCTTCGCAGCTGACCCCGCAGCACACGGTGGAGGTCAACCTGGTCT
TTGCCCGACGCGGCTCCCGCTTGGCTGTCCCGAGGAAGTGCGACGAAGCG
GAGTTGCCTTCTGCTCTCGATTCTCCCCGCTCCATGGATCCGGGGCGGAT
TTCTCCCACTTTGTTGAACGAACGGAAGAGCGCCGTTGAAGCCAAGGTCG
TGCATTTGATGAAGAAGGCAGGGAGCATGCGCCATGATAAATTGATAGAG
GCGGTGCTGCAGCACACGAGGCGGATGAACTTTCTGCCGCCCGTCGATTT
TATTTGTGAGGTGATTCGCTCCGACATTGACAAAGACTTTTTAGAGCTGG
CAGAGGATGGACCCAACCCTCTCTATCGGTATCAGGCGTAAGCAGGGAAA
AGGTTGAAGGGAGAAAGGAGGGAAAAAGGGGTGAGGGAAGGAGGGAAGGA
GGGATAGAGAGAAAGTAGCCGTAACGTGGAGGAGATGGAGAGAGAGGTAT
GTCGATAAGTATTAGTAGTGAATGGCGGGACGCATAGACACACAAAACAC
GTGTCTGAGAATGTGTCTTCTCTCTGTCTCCCATCTCGAAAGACCCTCGA
GTGAGTTCACGTGTGGACTGGATGATGTGTGTAGGTATGTGCTCGTGTGT
CGGATTGAGAAAGAAAGAGTGCAAATTAAATAATGTGTTTCTCATCCGTC
ATCCAGCATTTCAGATTTGCGTCTTGACGAAGGCAATTCGACATCAAATG
TATATCAATGATGAGAGAATGATCAAAGGCTTTCGAAAGAAAAACTCAAA
GAATCAAAGGGATAAAATGCAAAAA
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protein sequence of jgi.p|Nanoce1779_2|605047

>mRNA_9043-protein ID=mRNA_9043-protein|Name=jgi.p|Nanoce1779_2|605047|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MKQQRQGGAEQEVEFFAFILTGGSWPYPSTGPLMELPAPLARCVESFSNF
YDAKYKRRRLTWLHDLGHGEVLFHCPATARDYTLLVSTSQICILLLFNAR
PAWSVKELLQALDLDFAELVLCLYPLLRSQVLVSAPQVALASQLTPQHTV
EVNLVFARRGSRLAVPRKCDEAELPSALDSPRSMDPGRISPTLLNERKSA
VEAKVVHLMKKAGSMRHDKLIEAVLQHTRRMNFLPPVDFICEVIRSDIDK
DFLELAEDGPNPLYRYQA*
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mRNA from alignment at scaffold_30:292085..293359-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9043 ID=mRNA_9043|Name=jgi.p|Nanoce1779_2|605047|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp|location=Sequence derived from alignment at scaffold_30:292085..293359- (Nannochloropsis oceanica)
CTCGTGGTCGCATTCCGTGTTGGACGCTCCGCACATGAAGCAACAGCGGC
AGGGAGGAGCCGAGCAAGAGGTGGAATTTTTCGCGTTCATTTTGACGGGT
GGCTCGTGGCCGTACCCTTCCACAGGACCCTTGATGGAGCTCCCTGCCCC
CCTGGCCCGGTGCGTTGAATCTTTTTCCAACTTCTACGACGCTAAATACA
AGCGACGGCGCTTGACCTGGCTGCATGACCTGGGCCACGGGGAGGTGCTT
TTCCACTGCCCAGCCACTGCTCGGGACTACACGCTCCTCGTTTCTACCTC
CCAAATCTGTATCTTACTCCTTTTCAACGCCCGCCCCGCCTGGAGTGTCA
AGGAGCTCCTCCAAGCCCTCGACTTGGATTTCGCCGAGCTCGTCCTCTGC
CTCTACCCTCTCCTGCGATCCCAAGTCCTGGTCAGTGCGCCTCAAGTAGC
TCTTGCTTCGCAGCTGACCCCGCAGCACACGGTGGAGGTCAACCTGGTCT
TTGCCCGACGCGGCTCCCGCTTGGCTGTCCCGAGGAAGTGCGACGAAGCG
GAGTTGCCTTCTGCTCTCGATTCTCCCCGCTCCATGGATCCGGGGCGGAT
TTCTCCCACTTTGTTGAACGAACGGAAGAGCGCCGTTGAAGCCAAGGTCG
TGCATTTGATGAAGAAGGCAGGGAGCATGCGCCATGATAAATTGATAGAG
GCGGTGCTGCAGCACACGAGGCGGATGAACTTTCTGCCGCCCGTCGATTT
TATTTGTGAGGTGATTCGCTCCGACATTGACAAAGACTTTTTAGAGCTGG
CAGAGGATGGACCCAACCCTCTCTATCGGTATCAGGCGTAAGCAGGGAAA
AGGTTGAAGGGAGAAAGGAGGGAAAAAGGGGTGAGGGAAGGAGGGAAGGA
GGGATAGAGAGAAAGTAGCCGTAACGTGGAGGAGATGGAGAGAGAGGTAT
GTCGATAAGTATTAGTAGTGAATGGCGGGACGCATAGACACACAAAACAC
GTGTCTGAGAATGTGTCTTCTCTCTGTCTCCCATCTCGAAAGACCCTCGA
GTGAGTTCACGTGTGGACTGGATGATGTGTGTAGGTATGTGCTCGTGTGT
CGGATTGAGAAAGAAAGAGTGCAAATTAAATAATGTGTTTCTCATCCGTC
ATCCAGCATTTCAGATTTGCGTCTTGACGAAGGCAATTCGACATCAAATG
TATATCAATGATGAGAGAATGATCAAAGGCTTTCGAAAGAAAAACTCAAA
GAATCAAAGGGATAAAATGCAAAAA
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Coding sequence (CDS) from alignment at scaffold_30:292085..293359-

>mRNA_9043 ID=mRNA_9043|Name=jgi.p|Nanoce1779_2|605047|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at scaffold_30:292085..293359- (Nannochloropsis oceanica)
ATGAAGCAACAGCGGCAGGGAGGAGCCGAGCAAGAGGTGGAATTTTTCGC
GTTCATTTTGACGGGTGGCTCGTGGCCGTACCCTTCCACAGGACCCTTGA
TGGAGCTCCCTGCCCCCCTGGCCCGGTGCGTTGAATCTTTTTCCAACTTC
TACGACGCTAAATACAAGCGACGGCGCTTGACCTGGCTGCATGACCTGGG
CCACGGGGAGGTGCTTTTCCACTGCCCAGCCACTGCTCGGGACTACACGC
TCCTCGTTTCTACCTCCCAAATCTGTATCTTACTCCTTTTCAACGCCCGC
CCCGCCTGGAGTGTCAAGGAGCTCCTCCAAGCCCTCGACTTGGATTTCGC
CGAGCTCGTCCTCTGCCTCTACCCTCTCCTGCGATCCCAAGTCCTGGTCA
GTGCGCCTCAAGTAGCTCTTGCTTCGCAGCTGACCCCGCAGCACACGGTG
GAGGTCAACCTGGTCTTTGCCCGACGCGGCTCCCGCTTGGCTGTCCCGAG
GAAGTGCGACGAAGCGGAGTTGCCTTCTGCTCTCGATTCTCCCCGCTCCA
TGGATCCGGGGCGGATTTCTCCCACTTTGTTGAACGAACGGAAGAGCGCC
GTTGAAGCCAAGGTCGTGCATTTGATGAAGAAGGCAGGGAGCATGCGCCA
TGATAAATTGATAGAGGCGGTGCTGCAGCACACGAGGCGGATGAACTTTC
TGCCGCCCGTCGATTTTATTTGTGAGGTGATTCGCTCCGACATTGACAAA
GACTTTTTAGAGCTGGCAGAGGATGGACCCAACCCTCTCTATCGGTATCA
GGCGTAA
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Synonyms
Publications