jgi.p|Nanoce1779_2|605033, mRNA_9040 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605033
Unique Name	mRNA_9040
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1673
Alignment location	scaffold_30:284866..286867 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	605119
Track	FilteredModels2
ProteinId	605033

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_30	supercontig	scaffold_30:284866..286867 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605033	gene_9040	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605033	mRNA_9040-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9040	CDS_9040	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_30:284866..286867+
coding sequence from alignment at scaffold_30:284866..286867+

mRNA sequence

>mRNA_9040 ID=mRNA_9040|Name=jgi.p|Nanoce1779_2|605033|organism=Nannochloropsis oceanica|type=mRNA|length=1673bp
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACATAAACAACATAAACAACGAGAAAAA
GAAGAAGAAGAGCATCAGCAGCAAGGCTTGCCTCCGGGAGCGCAGAGCCA
GTCGCACCCCGCGGAGGAGCACTCGGATCAGCAAGAGCCCCCGCAGAATC
AAAGTTCATCCTCGGAACGGGAGGACTCGCGGCGGCCTACGCGCTCTACG
AGAAAAGGACACGATGATTGGCTAAAGATTCCTGTAGAAGCAACTGTTCG
GGTGTCAACGGGAACCTTGGAGACACTCGATGGGATCGTCTATGTTAGCG
TTGAGACCGGACGCCTTTTCAAGCGACAAGGCCGTGTGTACTTTGAGACT
ATAAGGGGGGGTGGCGTGTCCAAGTTTTTTGTCCCCGACTCGGAGCTTCC
CATGATTTCGGAGGATCATCCAGTTTTCAAGGAGGAGTTGGCGCGCATCG
AGGAGGACCGGGCGAAGAAGCTGGCCCAAGCCAAGCACATGTTAGAACTA
GGATTTTTGAACGAGGAAGCCACCTTTGACGTTGAACAGAGGGCGGCCAA
TAACACATTGGAGGTATGCAGGCCTCTTCCTCATAAACTTGGCATGTTTG
CTTTGGGTACCTGGGCAAACGCAAACTTACCTGCTCCTATTCGCATTACA
CAGTTTCGCAAGGAAGAGCTGCGATATCGCATGATAGGCCGCATCGACGA
CACACTAGAGGATCTGGAGGAAGGAGCTGCCATCGATTGCCTCGCGTTAT
TCAAAAAAAGTGCGTCGATTCCCATGTCCTCTTCGTCCTGCGTAGCATCC
TCTCCCACTTCCCACCTCAAGACGGGTTGCAAAAGCCAGCGCCCCAGAGA
GAGCTCTGATATCATTGTGGAGGAAGATACAAACGAGGAGGATGTGGTGC
AACAGGAAGGGGCCATGTCGGACGCTAATCAAAGCGTGGACATCCCACCT
ACATTACAAGGGGGCGCAGTGGAGGGATTGGAGGACCCGCAGCAGCAATT
AGTGTCCTTGTCATCCAGCGCCAGCGCGCCTGAGACCGAAGCCTCTGTAG
AGGGCGAGGTGGAAGATCTGGCGGTTCAGCGCAGTAGCTATACCTTGAAG
AAGGGCGAGATTACATTGGCCACGACATCGGTAATTACTGTAGATGATGC
TGTCGAGGGATTTGATTCTGTCCTGCCGCAGGGCAAGAAGCGGCGCAAGA
TCAACGCAGCGGACCTAGCCATCAGCACGCTCGCCATTGCCTCTGACATC
AATGCGGGACTGCAAGAAACGGGCTACGTACGGGAGTACGAGTATGACGA
CATACACGAAGTAGTCGTGGACAAGTTGTACCCTGACCCGGATTGGGGCG
AGGACGAGGACTTGATGGCGCCGTGATTGACTGCTAGTCCCCAACCTCCC
CATTAGCCTCCCTTTGCTCCTTTAGTCACCCCATTAGCCACAACATTGGC
AGAAACCCGTAGAAACCACCATGTGGATTCGTTCGACGGAAAGAAAATAG
CATAGTAGAGGTCGCAGTAACGCTTTTTGTTGCTTTTTGGTTGAGCTTTT
GGTCAAGCATGGGCCTAAGGTAA

protein sequence of jgi.p|Nanoce1779_2|605033

>mRNA_9040-protein ID=mRNA_9040-protein|Name=jgi.p|Nanoce1779_2|605033|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MISEDHPVFKEELARIEEDRAKKLAQAKHMLELGFLNEEATFDVEQRAAN
NTLEVCRPLPHKLGMFALGTWANANLPAPIRITQFRKEELRYRMIGRIDD
TLEDLEEGAAIDCLALFKKSASIPMSSSSCVASSPTSHLKTGCKSQRPRE
SSDIIVEEDTNEEDVVQQEGAMSDANQSVDIPPTLQGGAVEGLEDPQQQL
VSLSSSASAPETEASVEGEVEDLAVQRSSYTLKKGEITLATTSVITVDDA
VEGFDSVLPQGKKRRKINAADLAISTLAIASDINAGLQETGYVREYEYDD
IHEVVVDKLYPDPDWGEDEDLMAP*

mRNA from alignment at scaffold_30:284866..286867+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9040 ID=mRNA_9040|Name=jgi.p|Nanoce1779_2|605033|organism=Nannochloropsis oceanica|type=mRNA|length=2002bp|location=Sequence derived from alignment at scaffold_30:284866..286867+ (Nannochloropsis oceanica)
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACATAAACAACATAAACAACGAGAAAAA
GAAGAAGAAGAGCATCAGCAGCAAGGCTTGCCTCCGGGAGCGCAGAGCCA
GTCGCACCCCGCGGAGGAGCACTCGGATCAGCAAGAGCCCCCGCAGAATC
AAAGTTCATCCTCGGAACGGGAGGACTCGCGGCGGCCTACGCGCTCTACG
AGAAAAGGACACGATGATTGGCTAAAGATTCCTGTAGAAGCAACTGTTCG
GGTGTCAACGGGAACCTTGGAGACACTCGATGGGATCGTCTATGTTAGCG
TTGAGACCGGACGTGAGTATAGAGAAGATATGTGTTTTTCCGGCGTCCGT
TTTTTTGGGGGCTAGCGACGATCTCTTGAACTCACAAACGCGCGCACATG
CTCTTTCTCGCCACATAAATACAGGCCTTTTCAAGCGACAAGGCCGTGTG
TACTTTGAGACTATAAGGGGGGGTGGCGTGTCCAAGTTTTTTGTCCCCGA
CTCGGAGCTTCCCATGATTTCGGGTATGTATAGATGTAGAGAAACGGATC
GAGAGATAGACAGTACAAAATATTGTCACCTGCGTCATACTCTTGCACAA
ATCTACGTACTAACGCGCACTTACAAACTCAAACACAGAGGATCATCCAG
TTTTCAAGGAGGAGTTGGCGCGCATCGAGGAGGACCGGGCGAAGAAGCTG
GCCCAAGCCAAGCACATGTTAGAACTAGGATTTTTGAACGAGGAAGCCAC
CTTTGACGTTGAACAGAGGGCGGCCAATAACACATTGGAGGTATGCAGGC
CTCTTCCTCATAAACTTGGCATGTTTGCTTTGGGTACCTGGGCAAACGCA
AACTTACCTGCTCCTATTCGCATTACACAGTTTCGCAAGGAAGAGCTGCG
ATATCGCATGATAGGCCGCATCGACGACACACTAGAGGATCTGGAGGAAG
GAGGTAAGCAATTAAGGGAGGTCTAGTCACCACAAGGCACAAGTAGCAGA
TTTTATGAAATGAAAAGACTTATTTCATCGTCCCCTCTTCTTCCTCTCCG
AACAGCTGCCATCGATTGCCTCGCGTTATTCAAAAAAAGTGCGTCGATTC
CCATGTCCTCTTCGTCCTGCGTAGCATCCTCTCCCACTTCCCACCTCAAG
ACGGGTTGCAAAAGCCAGCGCCCCAGAGAGAGCTCTGATATCATTGTGGA
GGAAGATACAAACGAGGAGGATGTGGTGCAACAGGAAGGGGCCATGTCGG
ACGCTAATCAAAGCGTGGACATCCCACCTACATTACAAGGGGGCGCAGTG
GAGGGATTGGAGGACCCGCAGCAGCAATTAGTGTCCTTGTCATCCAGCGC
CAGCGCGCCTGAGACCGAAGCCTCTGTAGAGGGCGAGGTGGAAGATCTGG
CGGTTCAGCGCAGTAGCTATACCTTGAAGAAGGGCGAGATTACATTGGCC
ACGACATCGGTAATTACTGTAGATGATGCTGTCGAGGGATTTGATTCTGT
CCTGCCGCAGGGCAAGAAGCGGCGCAAGATCAACGCAGCGGACCTAGCCA
TCAGCACGCTCGCCATTGCCTCTGACATCAATGCGGGACTGCAAGAAACG
GGCTACGTACGGGAGTACGAGTATGACGACATACACGAAGTAGTCGTGGA
CAAGTTGTACCCTGACCCGGATTGGGGCGAGGACGAGGACTTGATGGCGC
CGTGATTGACTGCTAGTCCCCAACCTCCCCATTAGCCTCCCTTTGCTCCT
TTAGTCACCCCATTAGCCACAACATTGGCAGAAACCCGTAGAAACCACCA
TGTGGATTCGTTCGACGGAAAGAAAATAGCATAGTAGAGGTCGCAGTAAC
GCTTTTTGTTGCTTTTTGGTTGAGCTTTTGGTCAAGCATGGGCCTAAGGT
AA

Coding sequence (CDS) from alignment at scaffold_30:284866..286867+

>mRNA_9040 ID=mRNA_9040|Name=jgi.p|Nanoce1779_2|605033|organism=Nannochloropsis oceanica|type=CDS|length=2925bp|location=Sequence derived from alignment at scaffold_30:284866..286867+ (Nannochloropsis oceanica)
ATGATTTCGGAGGATCATCCAGTTTTCAAGGAGGAGTTGGCGCGCATCGA
GGAGGACCGGGCGAAGAAGCTGGCCCAAGCCAAGCACATGTTAGAACTAG
GATTTTTGAACGAGGAAGCCACCTTTGACGTTGAACAGAGGGCGGCCAAT
AACACATTGGAGGTATGCAGGCCTCTTCCTCATAAACTTGGCATGTTTGC
TTTGGGTACCTGGGCAAACGCAAACTTACCTGCTCCTATTCGCATTACAC
AGTTTCGCAAGGAAGAGCTGCGATATCGCATGATAGGCCGCATCGACGAC
ACACTAGAGGATCTGGAGGAAGGAGCTGCCATCGATTGCCTCGCGTTATT
CAAAAAAAGTGCGTCGATTCCCATGTCCTCTTCGTCCTGCGTAGCATCCT
CTCCCACTTCCCACCTCAAGACGGGTTGCAAAAGCCAGCGCCCCAGAGAG
AGCTCTGATATCATTGTGGAGGAAGATACAAACGAGGAGGATGTGGTGCA
ACAGGAAGGGGCCATGTCGGACGCTAATCAAAGCGTGGACATCCCACCTA
CATTACAAGGGGGCGCAGTGGAGGGATTGGAGGACCCGCAGCAGCAATTA
GTGTCCTTGTCATCCAGCGCCAGCGCGCCTGAGACCGAAGCCTCTGTAGA
GGGCGAGGTGGAAGATCTGGCGGTTCAGCGCAGTAGCTATACCTTGAAGA
AGGGCGAGATTACATTGGCCACGACATCGGTAATTACTGTAGATGATGCT
GTCGAGGGATTTGATTCTGTCCTGCCGCAGGGCAAGAAGCGGCGCAAGAT
CAACGCAGCGGACCTAGCCATCAGCACGCTCGCCATTGCCTCTGACATCA
ATGCGGGACTGCAAGAAACGGGCTACGTACGGGAGTACGAGTATGACGAC
ATACACGAAGTAGTCGTGGACAAGTTGTACCCTGACCCGGATTGGGGCGA
GGACGAGGACTTGATGGCGCCGTGAATGATTTCGGAGGATCATCCAGTTT
TCAAGGAGGAGTTGGCGCGCATCGAGGAGGACCGGGCGAAGAAGCTGGCC
CAAGCCAAGCACATGTTAGAACTAGGATTTTTGAACGAGGAAGCCACCTT
TGACGTTGAACAGAGGGCGGCCAATAACACATTGGAGGTATGCAGGCCTC
TTCCTCATAAACTTGGCATGTTTGCTTTGGGTACCTGGGCAAACGCAAAC
TTACCTGCTCCTATTCGCATTACACAGTTTCGCAAGGAAGAGCTGCGATA
TCGCATGATAGGCCGCATCGACGACACACTAGAGGATCTGGAGGAAGGAG
CTGCCATCGATTGCCTCGCGTTATTCAAAAAAAGTGCGTCGATTCCCATG
TCCTCTTCGTCCTGCGTAGCATCCTCTCCCACTTCCCACCTCAAGACGGG
TTGCAAAAGCCAGCGCCCCAGAGAGAGCTCTGATATCATTGTGGAGGAAG
ATACAAACGAGGAGGATGTGGTGCAACAGGAAGGGGCCATGTCGGACGCT
AATCAAAGCGTGGACATCCCACCTACATTACAAGGGGGCGCAGTGGAGGG
ATTGGAGGACCCGCAGCAGCAATTAGTGTCCTTGTCATCCAGCGCCAGCG
CGCCTGAGACCGAAGCCTCTGTAGAGGGCGAGGTGGAAGATCTGGCGGTT
CAGCGCAGTAGCTATACCTTGAAGAAGGGCGAGATTACATTGGCCACGAC
ATCGGTAATTACTGTAGATGATGCTGTCGAGGGATTTGATTCTGTCCTGC
CGCAGGGCAAGAAGCGGCGCAAGATCAACGCAGCGGACCTAGCCATCAGC
ACGCTCGCCATTGCCTCTGACATCAATGCGGGACTGCAAGAAACGGGCTA
CGTACGGGAGTACGAGTATGACGACATACACGAAGTAGTCGTGGACAAGT
TGTACCCTGACCCGGATTGGGGCGAGGACGAGGACTTGATGGCGCCGTGA
ATGATTTCGGAGGATCATCCAGTTTTCAAGGAGGAGTTGGCGCGCATCGA
GGAGGACCGGGCGAAGAAGCTGGCCCAAGCCAAGCACATGTTAGAACTAG
GATTTTTGAACGAGGAAGCCACCTTTGACGTTGAACAGAGGGCGGCCAAT
AACACATTGGAGGTATGCAGGCCTCTTCCTCATAAACTTGGCATGTTTGC
TTTGGGTACCTGGGCAAACGCAAACTTACCTGCTCCTATTCGCATTACAC
AGTTTCGCAAGGAAGAGCTGCGATATCGCATGATAGGCCGCATCGACGAC
ACACTAGAGGATCTGGAGGAAGGAGCTGCCATCGATTGCCTCGCGTTATT
CAAAAAAAGTGCGTCGATTCCCATGTCCTCTTCGTCCTGCGTAGCATCCT
CTCCCACTTCCCACCTCAAGACGGGTTGCAAAAGCCAGCGCCCCAGAGAG
AGCTCTGATATCATTGTGGAGGAAGATACAAACGAGGAGGATGTGGTGCA
ACAGGAAGGGGCCATGTCGGACGCTAATCAAAGCGTGGACATCCCACCTA
CATTACAAGGGGGCGCAGTGGAGGGATTGGAGGACCCGCAGCAGCAATTA
GTGTCCTTGTCATCCAGCGCCAGCGCGCCTGAGACCGAAGCCTCTGTAGA
GGGCGAGGTGGAAGATCTGGCGGTTCAGCGCAGTAGCTATACCTTGAAGA
AGGGCGAGATTACATTGGCCACGACATCGGTAATTACTGTAGATGATGCT
GTCGAGGGATTTGATTCTGTCCTGCCGCAGGGCAAGAAGCGGCGCAAGAT
CAACGCAGCGGACCTAGCCATCAGCACGCTCGCCATTGCCTCTGACATCA
ATGCGGGACTGCAAGAAACGGGCTACGTACGGGAGTACGAGTATGACGAC
ATACACGAAGTAGTCGTGGACAAGTTGTACCCTGACCCGGATTGGGGCGA
GGACGAGGACTTGATGGCGCCGTGA

Synonyms

Publications