jgi.p|Nanoce1779_2|605030, mRNA_9039 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605030
Unique Name	mRNA_9039
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1861
Alignment location	scaffold_30:281361..283413 -

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Properties


Property Name	Value
TranscriptId	605116
Track	FilteredModels2
ProteinId	605030

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_30	supercontig	scaffold_30:281361..283413 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605030	gene_9039	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605030	mRNA_9039-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9039	CDS_9039	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_30:281361..283413-
coding sequence from alignment at scaffold_30:281361..283413-

mRNA sequence

>mRNA_9039 ID=mRNA_9039|Name=jgi.p|Nanoce1779_2|605030|organism=Nannochloropsis oceanica|type=mRNA|length=1861bp
AGACAGGAGTGCCACCTTGGTCTCTTCTATTTCTTTTACTCGGAGCAACA
CCATGACTTCCCGCCTCCTTTTCCTTGGCGCGGCGGCTATGACGCTGCTT
CTGTCTAGCGAGGCCTTCTTTTTTAGCCGCATGCCCGCCCGTCTCCAGCA
GGCTAGCAAATCACCGCAGCTGGCTCTCATCGGGCACCAATTGAGCCTGA
TACCTTCCTCCATTTCCACGAGCAAGAAACGCTTTGCCCTAAGCAGCCCA
CTCAAGGCAGCGACACTCAATGTTGACAGTGATCCGACTACCTCCTTGAA
AAATGACGGCCTTAAGATCGAACTGCGTCAATTCTCCAAGTTCCTGCATT
CCACTGCCTGGTTTTCATGGTGGGCCCAGGTTATCTGCAATACCGTCGCA
GGCGTCATCCTCTTCTTCACCAACTCCTTCGTCTCCCCGTCAGCCGGCAG
TGGTTCCCCGCTCGCTGCCCGCAATATCTTCAGCAACGGCTATATCTTCG
CAGCTGGCGGCTTATGCCTGGGTGCTATTTCAATATTTTGGACCTGGGGC
TTCACGGGCGTCGCGAAACGCATCCGTCGTGCAGTTCTTGAGCCCCCGAC
CTCTCTCGCGATGATTCGCCGCGTCGTCCGCACCGCCATTTTTATCAATC
TTCTCGGCTTGCTCACCGCCTTGATTGGAGCAGAGCAGTTTGTGGGTAAT
CTCATGGCACGTGTTTTGTCCCAGCAGGGTTTCTCGCCATTGGTCATCAA
TCCTGGAGCGGGTGGCGGTGCGATTGCATCACCGACCGTGCAGCCGGTGG
ACATATTCGTGATTCAAGCGAATACTAATATCTTGTTGTCGCATTTCATT
TCTTTGGTGAGTTCATTGTTGTTATTGCTGAGGTATTCTAAGATAAGTCG
GGCAGCGGGGGAGTCGAACTAGGACGGAGGAGGGAAAACAAAGGACGGAG
ATTGTGGTAGGTTTGGAGGGAAAGGGAGCGGAGCGGAAGGATGGAGGGTT
GTAGATAAATATATAGGGCAGGGAAGAGTCGTGAAAGAAATACGAGGATG
GTATCGAAGAGGGGAAGAGAGAAGGAGGGAAGAAATATGAGCGTTGTCTC
GTTCTTTTACGTGATAAAGTTGTGTGAGTAGGGAAAAAGACGGGGTGGGT
AAGCCAGACAAGTCAAGGGAAGGGGGTGGGGGGATACAATCGATAAGAAA
ATGCACGAAGAAAAGATGAAAGAATGGAAAACACCACCTGGGCAGAATAT
GCGACGATATTTATATAAATGAAAGTTGCTTAGGTAGGGAGAGAATACAT
TACATGGGAACGAGCGTAAACAACAGGTTGCTGGCGGCCGCTCGTGTCCC
ACCTCTTGTGTTGAGGTTCATCATCGACTGTGCAGGCACGTCTTTCAAAC
TTAAATTGTCGAGGTTGGTCGTGCAGCCCCATTTACAGTATGCAACACAG
AACACCAACAGGACAGTGGGGGACACAAGGATTGTTCCAAAAGTGGGGGT
ATGGCTGTGAAACACTCTTCTTTTTCTTCCTTTCATAACATCCCCTCAGC
AACCTCACCGTCTTTTGCGCTTTGTATTTGCTCATATTTGATACCCTGAT
CTCGAATCCTCATACTCTCGTCGGCGGCTCTCCCTTTCATTCCCTCCCGG
CCGCAACCACCCCCCCCCAGCAGAAAAGCGATCTAATGCCCTTTCTGTCA
TTAACTCCATTTACTCCACCACCAGCACCCCTCTTCCCCCCACCAAACAA
ATGACACCTCATGCCGTCGTTCTCGCGCCATTTCGATCCTAATATATTCG
ATCCTTCCCAGATTTCACCCTTCCTCCCCCCCTCCTCTCCAGCGCCTGAT
TCTTCCCCCCC

protein sequence of jgi.p|Nanoce1779_2|605030

>mRNA_9039-protein ID=mRNA_9039-protein|Name=jgi.p|Nanoce1779_2|605030|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MTSRLLFLGAAAMTLLLSSEAFFFSRMPARLQQASKSPQLALIGHQLSLI
PSSISTSKKRFALSSPLKAATLNVDSDPTTSLKNDGLKIELRQFSKFLHS
TAWFSWWAQVICNTVAGVILFFTNSFVSPSAGSGSPLAARNIFSNGYIFA
AGGLCLGAISIFWTWGFTGVAKRIRRAVLEPPTSLAMIRRVVRTAIFINL
LGLLTALIGAEQFVGNLMARVLSQQGFSPLVINPGAGGGAIASPTVQPVD
IFVIQANTNILLSHFISLVSSLLLLLRYSKISRAAGESN*

mRNA from alignment at scaffold_30:281361..283413-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9039 ID=mRNA_9039|Name=jgi.p|Nanoce1779_2|605030|organism=Nannochloropsis oceanica|type=mRNA|length=2053bp|location=Sequence derived from alignment at scaffold_30:281361..283413- (Nannochloropsis oceanica)
AGACAGGAGTGCCACCTTGGTCTCTTCTATTTCTTTTACTCGGAGCAACA
CCATGACTTCCCGCCTCCTTTTCCTTGGCGCGGCGGCTATGACGCTGCTT
CTGTCTAGCGAGGCCTTCTTTTTTAGCCGCATGCCCGCCCGTCTCCAGCA
GGCTAGCAAATCACCGCAGCTGGCTCTCATCGGGTAAGTCGTGGTGGTGG
TTTAGATGTTGTCAGGAAAATTGATTGCTTCCCTTTCTGACACACCTCTT
TGCACCTCATCACATCGTATCGACTTCTTCTATCGAAAGGCACCAATTGA
GCCTGATACCTTCCTCCATTTCCACGAGCAAGAAACGCTTTGCCCTAAGC
AGCCCACTCAAGGCAGCGACACTCAATGTTGACAGTGATCCGACTACCTC
CTTGAAAAATGACGGTAAGTTTCTTCCTCCTTTGTCTCACCTGCCTTTCC
CCTTGTCCTTCTGTACGCTAACTCCACCGATCTTACGCTCAACGGCACAG
GCCTTAAGATCGAACTGCGTCAATTCTCCAAGTTCCTGCATTCCACTGCC
TGGTTTTCATGGTGGGCCCAGGTTATCTGCAATACCGTCGCAGGCGTCAT
CCTCTTCTTCACCAACTCCTTCGTCTCCCCGTCAGCCGGCAGTGGTTCCC
CGCTCGCTGCCCGCAATATCTTCAGCAACGGCTATATCTTCGCAGCTGGC
GGCTTATGCCTGGGTGCTATTTCAATATTTTGGACCTGGGGCTTCACGGG
CGTCGCGAAACGCATCCGTCGTGCAGTTCTTGAGCCCCCGACCTCTCTCG
CGATGATTCGCCGCGTCGTCCGCACCGCCATTTTTATCAATCTTCTCGGC
TTGCTCACCGCCTTGATTGGAGCAGAGCAGTTTGTGGGTAATCTCATGGC
ACGTGTTTTGTCCCAGCAGGGTTTCTCGCCATTGGTCATCAATCCTGGAG
CGGGTGGCGGTGCGATTGCATCACCGACCGTGCAGCCGGTGGACATATTC
GTGATTCAAGCGAATACTAATATCTTGTTGTCGCATTTCATTTCTTTGGT
GAGTTCATTGTTGTTATTGCTGAGGTATTCTAAGATAAGTCGGGCAGCGG
GGGAGTCGAACTAGGACGGAGGAGGGAAAACAAAGGACGGAGATTGTGGT
AGGTTTGGAGGGAAAGGGAGCGGAGCGGAAGGATGGAGGGTTGTAGATAA
ATATATAGGGCAGGGAAGAGTCGTGAAAGAAATACGAGGATGGTATCGAA
GAGGGGAAGAGAGAAGGAGGGAAGAAATATGAGCGTTGTCTCGTTCTTTT
ACGTGATAAAGTTGTGTGAGTAGGGAAAAAGACGGGGTGGGTAAGCCAGA
CAAGTCAAGGGAAGGGGGTGGGGGGATACAATCGATAAGAAAATGCACGA
AGAAAAGATGAAAGAATGGAAAACACCACCTGGGCAGAATATGCGACGAT
ATTTATATAAATGAAAGTTGCTTAGGTAGGGAGAGAATACATTACATGGG
AACGAGCGTAAACAACAGGTTGCTGGCGGCCGCTCGTGTCCCACCTCTTG
TGTTGAGGTTCATCATCGACTGTGCAGGCACGTCTTTCAAACTTAAATTG
TCGAGGTTGGTCGTGCAGCCCCATTTACAGTATGCAACACAGAACACCAA
CAGGACAGTGGGGGACACAAGGATTGTTCCAAAAGTGGGGGTATGGCTGT
GAAACACTCTTCTTTTTCTTCCTTTCATAACATCCCCTCAGCAACCTCAC
CGTCTTTTGCGCTTTGTATTTGCTCATATTTGATACCCTGATCTCGAATC
CTCATACTCTCGTCGGCGGCTCTCCCTTTCATTCCCTCCCGGCCGCAACC
ACCCCCCCCCAGCAGAAAAGCGATCTAATGCCCTTTCTGTCATTAACTCC
ATTTACTCCACCACCAGCACCCCTCTTCCCCCCACCAAACAAATGACACC
TCATGCCGTCGTTCTCGCGCCATTTCGATCCTAATATATTCGATCCTTCC
CAGATTTCACCCTTCCTCCCCCCCTCCTCTCCAGCGCCTGATTCTTCCCC
CCC

Coding sequence (CDS) from alignment at scaffold_30:281361..283413-

>mRNA_9039 ID=mRNA_9039|Name=jgi.p|Nanoce1779_2|605030|organism=Nannochloropsis oceanica|type=CDS|length=2610bp|location=Sequence derived from alignment at scaffold_30:281361..283413- (Nannochloropsis oceanica)
GCCTTAAGATCGAACTGCGTCAATTCTCCAAGTTCCTGCATTCCACTGCC
TGGTTTTCATGGTGGGCCCAGGTTATCTGCAATACCGTCGCAGGCGTCAT
CCTCTTCTTCACCAACTCCTTCGTCTCCCCGTCAGCCGGCAGTGGTTCCC
CGCTCGCTGCCCGCAATATCTTCAGCAACGGCTATATCTTCGCAGCTGGC
GGCTTATGCCTGGGTGCTATTTCAATATTTTGGACCTGGGGCTTCACGGG
CGTCGCGAAACGCATCCGTCGTGCAGTTCTTGAGCCCCCGACCTCTCTCG
CGATGATTCGCCGCGTCGTCCGCACCGCCATTTTTATCAATCTTCTCGGC
TTGCTCACCGCCTTGATTGGAGCAGAGCAGTTTGTGGGTAATCTCATGGC
ACGTGTTTTGTCCCAGCAGGGTTTCTCGCCATTGGTCATCAATCCTGGAG
CGGGTGGCGGTGCGATTGCATCACCGACCGTGCAGCCGGTGGACATATTC
GTGATTCAAGCGAATACTAATATCTTGTTGTCGCATTTCATTTCTTTGGT
GAGTTCATTGTTGTTATTGCTGAGGTATTCTAAGATAAGTCGGGCAGCGG
GGGAGTCGAACTAGGCACCAATTGAGCCTGATACCTTCCTCCATTTCCAC
GAGCAAGAAACGCTTTGCCCTAAGCAGCCCACTCAAGGCAGCGACACTCA
ATGTTGACAGTGATCCGACTACCTCCTTGAAAAATGACGATGACTTCCCG
CCTCCTTTTCCTTGGCGCGGCGGCTATGACGCTGCTTCTGTCTAGCGAGG
CCTTCTTTTTTAGCCGCATGCCCGCCCGTCTCCAGCAGGCTAGCAAATCA
CCGCAGCTGGCTCTCATCGGGCCTTAAGATCGAACTGCGTCAATTCTCCA
AGTTCCTGCATTCCACTGCCTGGTTTTCATGGTGGGCCCAGGTTATCTGC
AATACCGTCGCAGGCGTCATCCTCTTCTTCACCAACTCCTTCGTCTCCCC
GTCAGCCGGCAGTGGTTCCCCGCTCGCTGCCCGCAATATCTTCAGCAACG
GCTATATCTTCGCAGCTGGCGGCTTATGCCTGGGTGCTATTTCAATATTT
TGGACCTGGGGCTTCACGGGCGTCGCGAAACGCATCCGTCGTGCAGTTCT
TGAGCCCCCGACCTCTCTCGCGATGATTCGCCGCGTCGTCCGCACCGCCA
TTTTTATCAATCTTCTCGGCTTGCTCACCGCCTTGATTGGAGCAGAGCAG
TTTGTGGGTAATCTCATGGCACGTGTTTTGTCCCAGCAGGGTTTCTCGCC
ATTGGTCATCAATCCTGGAGCGGGTGGCGGTGCGATTGCATCACCGACCG
TGCAGCCGGTGGACATATTCGTGATTCAAGCGAATACTAATATCTTGTTG
TCGCATTTCATTTCTTTGGTGAGTTCATTGTTGTTATTGCTGAGGTATTC
TAAGATAAGTCGGGCAGCGGGGGAGTCGAACTAGGCACCAATTGAGCCTG
ATACCTTCCTCCATTTCCACGAGCAAGAAACGCTTTGCCCTAAGCAGCCC
ACTCAAGGCAGCGACACTCAATGTTGACAGTGATCCGACTACCTCCTTGA
AAAATGACGATGACTTCCCGCCTCCTTTTCCTTGGCGCGGCGGCTATGAC
GCTGCTTCTGTCTAGCGAGGCCTTCTTTTTTAGCCGCATGCCCGCCCGTC
TCCAGCAGGCTAGCAAATCACCGCAGCTGGCTCTCATCGGGCCTTAAGAT
CGAACTGCGTCAATTCTCCAAGTTCCTGCATTCCACTGCCTGGTTTTCAT
GGTGGGCCCAGGTTATCTGCAATACCGTCGCAGGCGTCATCCTCTTCTTC
ACCAACTCCTTCGTCTCCCCGTCAGCCGGCAGTGGTTCCCCGCTCGCTGC
CCGCAATATCTTCAGCAACGGCTATATCTTCGCAGCTGGCGGCTTATGCC
TGGGTGCTATTTCAATATTTTGGACCTGGGGCTTCACGGGCGTCGCGAAA
CGCATCCGTCGTGCAGTTCTTGAGCCCCCGACCTCTCTCGCGATGATTCG
CCGCGTCGTCCGCACCGCCATTTTTATCAATCTTCTCGGCTTGCTCACCG
CCTTGATTGGAGCAGAGCAGTTTGTGGGTAATCTCATGGCACGTGTTTTG
TCCCAGCAGGGTTTCTCGCCATTGGTCATCAATCCTGGAGCGGGTGGCGG
TGCGATTGCATCACCGACCGTGCAGCCGGTGGACATATTCGTGATTCAAG
CGAATACTAATATCTTGTTGTCGCATTTCATTTCTTTGGTGAGTTCATTG
TTGTTATTGCTGAGGTATTCTAAGATAAGTCGGGCAGCGGGGGAGTCGAA
CTAGGCACCAATTGAGCCTGATACCTTCCTCCATTTCCACGAGCAAGAAA
CGCTTTGCCCTAAGCAGCCCACTCAAGGCAGCGACACTCAATGTTGACAG
TGATCCGACTACCTCCTTGAAAAATGACGATGACTTCCCGCCTCCTTTTC
CTTGGCGCGGCGGCTATGACGCTGCTTCTGTCTAGCGAGGCCTTCTTTTT
TAGCCGCATGCCCGCCCGTCTCCAGCAGGCTAGCAAATCACCGCAGCTGG
CTCTCATCGG

Synonyms

Publications