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Properties
Property Name | Value |
TranscriptId | 560191 |
Track | FilteredModels2 |
ProteinId | 560105 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_30 | supercontig | scaffold_30:275098..277480 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9036 ID=mRNA_9036|Name=jgi.p|Nanoce1779_2|560105|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp AGGTGCACACATAGCCACCATCGCCACCAGCAGAATGGCGCGGGATCTTT CCTGCGGTGCAGCATCGACGTTCGTACTAGTATGCCTTGTCCTCGTCCTT TCCCTCGCCGAGGCCTTTCTCCCGGCTATACCCAAGACCCCTGCGACAAC ACGCCGATTCTCCTCACCCGAAACAATTACATCACCGTTTGAGTCTGGCG TCTCGTCCGGCCCGAACGATGACTTTTTGCCTCTGACATTCGAGAATGTT GAGTTGGTGCTGGACGAGATGCGGCCTTACCTCATGTCGGATGGTGGCAA CGTGGTAATTTCGGAGATTGACGGTCCGGTTGTGAAGCTTGAGCTGCAAG GGGCATGCGGAAGCTGTCCTTCTTCCACCATGACCATGAAAATGGGCCTG GAACGCCGCCTTCGCGAGAAGATCCCCGAAATTAGCGAGGTCATCCAAGC CATGCCCGAAGGACCTGCACTCACCACAGAAAACATAGATGGTGTCCTAG AGGGCGTTCGCCCCTTCTTGATGGTCGCAGGGGGCTCAATCTCAGTGAAG GAGATCTCGGGTCTGGGCGGGCTACAACCTCGGGTCCTCTTGCACATGGA GGGAAACAATCAAAGCCTCTTCTCGGTGCGGATGGAGATCACGCAAAGAA TACTGCGGAATTTCATGGTGGCTGGTTTGCGTGTGGATTGGACGGACCAA GAGGGTGTGCTCTAGGGATACGCTGGGTGATTTTTAAAGGATGGATGGCG CTGTGAGGGCGCGCCTCCGTTTTCGGTGGGAAGAGAACAATCTCTCCTAG AAATATGGCAATGGCGTGGCGTGGGTAAGGTCGTGCCGGAAAGTACGCGC AAATGGCCACTTTGATTGCCATGGGGGTTCGATGATTGAGGGAGCACAGA GACATTTGATAGATGATGACGGAGAAAGGGAAGGAACGGCACATGCCGCG GACATTGAGGTATCTCTCACGTCATGTCGTCCTCCTCCCTCTCCGTTAAG CCAAACAGCTGTAAAGAAACAGAAATACTAAGAGGAACCATGTCCTCTTG CACAATCCACAGCTACTTATTCTTTGCGAAAGACATTTCCATTGCGAATA TCGGTGAGACATGACTCTACCTCCTACCTGATCCCTCGCGCCAAATCAAA GGACGACAATGCTTCTGCTTTTTTACATACTCCTTTTCGGTACAACGGAC GTTTCAGGAGTTTAATTGAAGGTCGCGCAAACAATAAGTATCCCTTACCT TCCTGGATTTGTAGCGTGGTTGGAAGGTCACACAGACAGCACACAGAGCG TTGCCCTCTTGCCTGGTGCGGTGCCATCCAGTCCAGCTCGTCCCAGCGAA GGAACTGCTGGCTTTATATGTCTTTTTAAAGAACACAAATCTTTCATAAT TGCTTGCTTGGGATTGCCTTTTCATTTGCTGCCCTACATACAGACCAGAA GGCCCCTTACGTCTACTTCGCTGACAGACGCCCATCAGTCCTCCCCATCC AAACCCACACCAAACATAATCTAGTGTCCCCGTGACGACATACATCACAT CAAATAATTACCTGGACACGAAGGCTTCGCGGCTGTTCCCTTAAATCATA AAGAAACAACACACTTGACTCCCTTCCAAAAACATTTCCGATATCCGCGA ATAACCGAGCAGGCCCATCAAGTCTCAGAATGACCCGTTATAGGTAAGGG ACGACCCTGGTTCTCAATTGTGCGGGCCATTTTTCCACCTATCCACGGGG CAAGAATGTTCCTGACGACGCGAATAATGAAGAGTCATGTCTCATTTATA GCGCAAGATTGGCGCGTTAGGTCTCACTTGGCGCATAATCAATACGGTGG ACAGCTTCAAGAACCTTTATGGCGCAGTGCATTAACCGGATTTGGCCCTG CACGGTGCTATTGGCAGCATTGGATGCATGATGCTCTTTGGTTGAATAGG GCTTGTAGCTCGAGTATGTCTCCATGCGGCGGGTATCGTTACAGGTCGGG CGATGACCGTCTCGCGTCAATCCACTCTG back to topprotein sequence of jgi.p|Nanoce1779_2|560105 >mRNA_9036-protein ID=mRNA_9036-protein|Name=jgi.p|Nanoce1779_2|560105|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp MARDLSCGAASTFVLVCLVLVLSLAEAFLPAIPKTPATTRRFSSPETITS PFESGVSSGPNDDFLPLTFENVELVLDEMRPYLMSDGGNVVISEIDGPVV KLELQGACGSCPSSTMTMKMGLERRLREKIPEISEVIQAMPEGPALTTEN IDGVLEGVRPFLMVAGGSISVKEISGLGGLQPRVLLHMEGNNQSLFSVRM EITQRILRNFMVAGLRVDWTDQEGVL* back to topmRNA from alignment at scaffold_30:275098..277480- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9036 ID=mRNA_9036|Name=jgi.p|Nanoce1779_2|560105|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp|location=Sequence derived from alignment at scaffold_30:275098..277480- (Nannochloropsis oceanica) AGGTGCACACATAGCCACCATCGCCACCAGCAGAATGGCGCGGGATCTTT
CCTGCGGTGCAGCATCGACGTTCGTACTAGTATGCCTTGTCCTCGTCCTT
TCCCTCGCCGAGGCCTTTCTCCCGGCTATACCCAAGACCCCTGCGACAAC
ACGCCGATTCTCCTCACCCGAAACAATTACATCACCGTTTGAGTCTGGCG
TCTCGGTAAGTGTGCTTCTATGGTGCCCGTGAAAGTGTAGGGAGTGATGA
CATTGCTTTTTCCATGGGCTATGTCAAGGCCTCAGATCCTACCCGCTTCA
CACTTTCCATATTTTTTGATAGTCCGGCCCGAACGATGACTTTTTGCCTC
TGACATTCGAGAATGTTGAGTTGGTGCTGGACGAGATGCGGCCTTACCTC
ATGTCGGATGGGTAAGAGAGAAGTTATATAATGGATCTTTGAGGGGGTGT
CGGACAGCAGTGGAGTCGATAGATTGCTGATACTCATACTGTCCTCCTTA
TCTATTTTCGACAGTGGCAACGTGGTAATTTCGGAGATTGACGGTCCGGT
TGTGAAGCTTGAGCTGCAAGGGGCATGCGGAAGCTGTCCTTCTTCCACCA
TGACCATGAAAATGGGCCTGGAACGCCGCCTTCGCGAGAAGATCCCCGAA
ATTAGCGAGGTGGGTAATTTTGCGGGTTGGGATAAAGGCATGGAATGAAC
ACTTGGAAGATGGAAGAATCCAGGAATATTTACCTTGCAACCACGCTCAC
TACTCGATCGTCCTCTACTTTTTTTCGATGTACACACGAACAGGTCATCC
AAGCCATGCCCGAAGGACCTGCACTCACCACAGAAAACATAGATGGTGTC
CTAGAGGGCGTTCGCCCCTTCTTGATGGTCGCAGGGGGCTCAATCTCAGT
GAAGGAGATCTCGGGTCTGGGCGGGCTACAACCTCGGGTCCTCTTGCACA
TGGAGGGAAACAATCAAAGCCTCTTCTCGGTGCGGATGGAGATCACGCAA
AGAATACTGCGGAATTTCATGGTGGCTGGTTTGCGTGTGGATTGGACGGA
CCAAGAGGGTGTGCTCTAGGGATACGCTGGGTGATTTTTAAAGGATGGAT
GGCGCTGTGAGGGCGCGCCTCCGTTTTCGGTGGGAAGAGAACAATCTCTC
CTAGAAATATGGCAATGGCGTGGCGTGGGTAAGGTCGTGCCGGAAAGTAC
GCGCAAATGGCCACTTTGATTGCCATGGGGGTTCGATGATTGAGGGAGCA
CAGAGACATTTGATAGATGATGACGGAGAAAGGGAAGGAACGGCACATGC
CGCGGACATTGAGGTATCTCTCACGTCATGTCGTCCTCCTCCCTCTCCGT
TAAGCCAAACAGCTGTAAAGAAACAGAAATACTAAGAGGAACCATGTCCT
CTTGCACAATCCACAGCTACTTATTCTTTGCGAAAGACATTTCCATTGCG
AATATCGGTGAGACATGACTCTACCTCCTACCTGATCCCTCGCGCCAAAT
CAAAGGACGACAATGCTTCTGCTTTTTTACATACTCCTTTTCGGTACAAC
GGACGTTTCAGGAGTTTAATTGAAGGTCGCGCAAACAATAAGTATCCCTT
ACCTTCCTGGATTTGTAGCGTGGTTGGAAGGTCACACAGACAGCACACAG
AGCGTTGCCCTCTTGCCTGGTGCGGTGCCATCCAGTCCAGCTCGTCCCAG
CGAAGGAACTGCTGGCTTTATATGTCTTTTTAAAGAACACAAATCTTTCA
TAATTGCTTGCTTGGGATTGCCTTTTCATTTGCTGCCCTACATACAGACC
AGAAGGCCCCTTACGTCTACTTCGCTGACAGACGCCCATCAGTCCTCCCC
ATCCAAACCCACACCAAACATAATCTAGTGTCCCCGTGACGACATACATC
ACATCAAATAATTACCTGGACACGAAGGCTTCGCGGCTGTTCCCTTAAAT
CATAAAGAAACAACACACTTGACTCCCTTCCAAAAACATTTCCGATATCC
GCGAATAACCGAGCAGGCCCATCAAGTCTCAGAATGACCCGTTATAGGTA
AGGGACGACCCTGGTTCTCAATTGTGCGGGCCATTTTTCCACCTATCCAC
GGGGCAAGAATGTTCCTGACGACGCGAATAATGAAGAGTCATGTCTCATT
TATAGCGCAAGATTGGCGCGTTAGGTCTCACTTGGCGCATAATCAATACG
GTGGACAGCTTCAAGAACCTTTATGGCGCAGTGCATTAACCGGATTTGGC
CCTGCACGGTGCTATTGGCAGCATTGGATGCATGATGCTCTTTGGTTGAA
TAGGGCTTGTAGCTCGAGTATGTCTCCATGCGGCGGGTATCGTTACAGGT
CGGGCGATGACCGTCTCGCGTCAATCCACTCTG back to topCoding sequence (CDS) from alignment at scaffold_30:275098..277480- >mRNA_9036 ID=mRNA_9036|Name=jgi.p|Nanoce1779_2|560105|organism=Nannochloropsis oceanica|type=CDS|length=2724bp|location=Sequence derived from alignment at scaffold_30:275098..277480- (Nannochloropsis oceanica) GTCATCCAAGCCATGCCCGAAGGACCTGCACTCACCACAGAAAACATAGA TGGTGTCCTAGAGGGCGTTCGCCCCTTCTTGATGGTCGCAGGGGGCTCAA TCTCAGTGAAGGAGATCTCGGGTCTGGGCGGGCTACAACCTCGGGTCCTC TTGCACATGGAGGGAAACAATCAAAGCCTCTTCTCGGTGCGGATGGAGAT CACGCAAAGAATACTGCGGAATTTCATGGTGGCTGGTTTGCGTGTGGATT GGACGGACCAAGAGGGTGTGCTCTAGTGGCAACGTGGTAATTTCGGAGAT TGACGGTCCGGTTGTGAAGCTTGAGCTGCAAGGGGCATGCGGAAGCTGTC CTTCTTCCACCATGACCATGAAAATGGGCCTGGAACGCCGCCTTCGCGAG AAGATCCCCGAAATTAGCGAGTCCGGCCCGAACGATGACTTTTTGCCTCT GACATTCGAGAATGTTGAGTTGGTGCTGGACGAGATGCGGCCTTACCTCA TGTCGGATGGATGGCGCGGGATCTTTCCTGCGGTGCAGCATCGACGTTCG TACTAGTATGCCTTGTCCTCGTCCTTTCCCTCGCCGAGGCCTTTCTCCCG GCTATACCCAAGACCCCTGCGACAACACGCCGATTCTCCTCACCCGAAAC AATTACATCACCGTTTGAGTCTGGCGTCTCGGTCATCCAAGCCATGCCCG AAGGACCTGCACTCACCACAGAAAACATAGATGGTGTCCTAGAGGGCGTT CGCCCCTTCTTGATGGTCGCAGGGGGCTCAATCTCAGTGAAGGAGATCTC GGGTCTGGGCGGGCTACAACCTCGGGTCCTCTTGCACATGGAGGGAAACA ATCAAAGCCTCTTCTCGGTGCGGATGGAGATCACGCAAAGAATACTGCGG AATTTCATGGTGGCTGGTTTGCGTGTGGATTGGACGGACCAAGAGGGTGT GCTCTAGTGGCAACGTGGTAATTTCGGAGATTGACGGTCCGGTTGTGAAG CTTGAGCTGCAAGGGGCATGCGGAAGCTGTCCTTCTTCCACCATGACCAT GAAAATGGGCCTGGAACGCCGCCTTCGCGAGAAGATCCCCGAAATTAGCG AGTCCGGCCCGAACGATGACTTTTTGCCTCTGACATTCGAGAATGTTGAG TTGGTGCTGGACGAGATGCGGCCTTACCTCATGTCGGATGGATGGCGCGG GATCTTTCCTGCGGTGCAGCATCGACGTTCGTACTAGTATGCCTTGTCCT CGTCCTTTCCCTCGCCGAGGCCTTTCTCCCGGCTATACCCAAGACCCCTG CGACAACACGCCGATTCTCCTCACCCGAAACAATTACATCACCGTTTGAG TCTGGCGTCTCGGTCATCCAAGCCATGCCCGAAGGACCTGCACTCACCAC AGAAAACATAGATGGTGTCCTAGAGGGCGTTCGCCCCTTCTTGATGGTCG CAGGGGGCTCAATCTCAGTGAAGGAGATCTCGGGTCTGGGCGGGCTACAA CCTCGGGTCCTCTTGCACATGGAGGGAAACAATCAAAGCCTCTTCTCGGT GCGGATGGAGATCACGCAAAGAATACTGCGGAATTTCATGGTGGCTGGTT TGCGTGTGGATTGGACGGACCAAGAGGGTGTGCTCTAGTGGCAACGTGGT AATTTCGGAGATTGACGGTCCGGTTGTGAAGCTTGAGCTGCAAGGGGCAT GCGGAAGCTGTCCTTCTTCCACCATGACCATGAAAATGGGCCTGGAACGC CGCCTTCGCGAGAAGATCCCCGAAATTAGCGAGTCCGGCCCGAACGATGA CTTTTTGCCTCTGACATTCGAGAATGTTGAGTTGGTGCTGGACGAGATGC GGCCTTACCTCATGTCGGATGGATGGCGCGGGATCTTTCCTGCGGTGCAG CATCGACGTTCGTACTAGTATGCCTTGTCCTCGTCCTTTCCCTCGCCGAG GCCTTTCTCCCGGCTATACCCAAGACCCCTGCGACAACACGCCGATTCTC CTCACCCGAAACAATTACATCACCGTTTGAGTCTGGCGTCTCGGTCATCC AAGCCATGCCCGAAGGACCTGCACTCACCACAGAAAACATAGATGGTGTC CTAGAGGGCGTTCGCCCCTTCTTGATGGTCGCAGGGGGCTCAATCTCAGT GAAGGAGATCTCGGGTCTGGGCGGGCTACAACCTCGGGTCCTCTTGCACA TGGAGGGAAACAATCAAAGCCTCTTCTCGGTGCGGATGGAGATCACGCAA AGAATACTGCGGAATTTCATGGTGGCTGGTTTGCGTGTGGATTGGACGGA CCAAGAGGGTGTGCTCTAGTGGCAACGTGGTAATTTCGGAGATTGACGGT CCGGTTGTGAAGCTTGAGCTGCAAGGGGCATGCGGAAGCTGTCCTTCTTC CACCATGACCATGAAAATGGGCCTGGAACGCCGCCTTCGCGAGAAGATCC CCGAAATTAGCGAGTCCGGCCCGAACGATGACTTTTTGCCTCTGACATTC GAGAATGTTGAGTTGGTGCTGGACGAGATGCGGCCTTACCTCATGTCGGA TGGATGGCGCGGGATCTTTCCTGCGGTGCAGCATCGACGTTCGTACTAGT ATGCCTTGTCCTCGTCCTTTCCCTCGCCGAGGCCTTTCTCCCGGCTATAC CCAAGACCCCTGCGACAACACGCCGATTCTCCTCACCCGAAACAATTACA TCACCGTTTGAGTCTGGCGTCTCG back to top
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