jgi.p|Nanoce1779_2|250417, mRNA_9034 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|250417
Unique NamemRNA_9034
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1959
Alignment locationscaffold_30:256385..258686 +

Link to JBrowse

Properties
Property NameValue
TranscriptId250503
TrackFilteredModels2
ProteinId250417
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:256385..258686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|250417gene_9034Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|250417mRNA_9034-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9034CDS_9034Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9034 ID=mRNA_9034|Name=jgi.p|Nanoce1779_2|250417|organism=Nannochloropsis oceanica|type=mRNA|length=1959bp
CTTCTCGTCTCGGAACTCCATCGTCATCTCGTCATCCACCACCCACAACA
TAAAACACCACAGAGAGAGCGTTGCACGCCAGCCGCAACAGTAGCAGCAT
GACCAATTCTACTGAAGCCACGGAGGTCTCCCCTCCGGCCGCCGAGGCTG
CGGAGGAGAGCAAGCCCAAGGCTCCCAAGGCCCTCCCCGCCGGCCCCCGC
CCCGACAAGCGCAATCTCGACAAGGCCGTAGGTGCCCTGCAAGCCGAGAT
CGACAAGCTGAACGAGAACATTGCGGGGTATGATAAAAAGATGGAGGAAA
TCAAGAAGAAGATTGACGTGGCCATGGCCGCACGGTCTGGAGAACAGGAC
GAGTTATCCAAGGAAAGGGCGAAACGTGACGCCATCAAGGCGGAGCTCGA
CAAGATCAAGGCGGAGAAGGACACCCTCTCGGCTGAGTTCGACCGAGTCA
AGGGGAAGGTGGACACGGCCATCGACGCAAGCAAGAACGCGAAGCAAAGC
TTGAAGTTTCGATCTGTCGAGGAGATTGACGCGGAGATGAGCCGCCTGAA
CAAGCTTCAGAGCACCACGTCCATGACTTTGGGCGAGGAGAAGAAGCTGG
TCAAGGAGCTGGAGAGCCTCCGCGGGCAGAAGCGACAGCTGTCTGCGTTA
GGGGCGTCGGAGGGACAGATCAAGAACGATAAGGACGAAAGGGCGCGGAT
CCAGGGGCTGTTGAAGGCGAAAAGAGACGCCTTCACCGAGTGCCTGGGGC
GGCTGACTGCGCAGAGGGAGGTGTGTGATGCGGTGCAGGCGAAGGAGAAT
GGCGGCGAGGGGGGAAAGAAGGGTCTAATCCCCACATTACATGATGAAAG
GAACGTATTCTGGAAAAAGAAGTCGGAGGCTATCACCCAGATCAAGGCGA
TTCGTGAGCAGGTTAAGGGAAAGTGGGATGAGTTCAAGGCGGCGAGGAAG
GAGTGGGAGGCGTTCATGGATGAGGAGAGGAAGGTGAGGGAAGCGGAGCG
GAAAGCCCAGAAGGAGGAATGGGAGAGGAAGCGAGAGGAGGAGGAGGCCA
AGAAAATTCCGTTTGAGGAGGAAATGGCTCTGTGCGACTACCTATCAAAT
TACTTGAAGACTACCTTTTTAGTCGAGAAGGAGACAGCCACCGCGGCGGT
TGCAGCAGCTGCGGTGGCGGCGGCGGCGGGGCCGGCGGCGGCTTTTGAGC
ATGATGGGATGACATTACAGGCTTTCAGGAGAGAGGATGAGGAGGAGGAG
CGGTGGGTGGGGGGCGGGAAGAAGAAGAAGGAGAAGAAGCCTGAGGGGGG
GAAGAAGAAAAACAGCTCCTTGACACACTCTCCGGAGCTGCTGGCGTCGT
TTGCGCTTCTGAAACTTGACGCACCGAGTAAGAAGGACGGGGTTGAGGCG
GCGGTGGTGGCACTGAAGGAGAAGAAAGAGTGGTTCTCAGTCCAGCCCCG
CCCGATCAAGAAGAAGGCGGAGCCCAAGGAAAAGGAGGAAGGGGAGGAGG
GCATGGGGGAAAACGGAGAGGCGGATCCGGTTGCTGGGGAGGAGGGTGGA
AATGCCGGAAACAGTAAGGGAGGGAAGGGAAAGGGGGGGAGAGGTGGGGA
GAAGAAGGCGGCGACTAAGGAATTTAAACGATCGGATGACGATTTCCCCA
CGTTGGGCGCTACGGTGGCGGCCCCAGCGGCTAAAGCCGAGGCGTAAAAA
GGGGAGAGAGATATTTTAAAATAGTTGGAGGGAACGAACGAGTGAAGATA
ATTTGGCTTGTCACGCATGCATGCGATAAGGTGGTAAGATCGATCGGGAA
AGGAGACAGGGAATGGATGGTAGCAAGGCTTTGAGTGAGGTAACAAATGA
TGAAGAAAGAAAGGAGGGATTTATAGGTAGAGCACAAATCGAGACGTCAG
ATAGGGTGGAGGAAGAAATTGCGCGCGTGTGATAGTGAGAGAGTGAAATA
CACAGGCAA
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protein sequence of jgi.p|Nanoce1779_2|250417

>mRNA_9034-protein ID=mRNA_9034-protein|Name=jgi.p|Nanoce1779_2|250417|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MTNSTEATEVSPPAAEAAEESKPKAPKALPAGPRPDKRNLDKAVGALQAE
IDKLNENIAGYDKKMEEIKKKIDVAMAARSGEQDELSKERAKRDAIKAEL
DKIKAEKDTLSAEFDRVKGKVDTAIDASKNAKQSLKFRSVEEIDAEMSRL
NKLQSTTSMTLGEEKKLVKELESLRGQKRQLSALGASEGQIKNDKDERAR
IQGLLKAKRDAFTECLGRLTAQREVCDAVQAKENGGEGGKKGLIPTLHDE
RNVFWKKKSEAITQIKAIREQVKGKWDEFKAARKEWEAFMDEERKVREAE
RKAQKEEWERKREEEEAKKIPFEEEMALCDYLSNYLKTTFLVEKETATAA
VAAAAVAAAAGPAAAFEHDGMTLQAFRREDEEEERWVGGGKKKKEKKPEG
GKKKNSSLTHSPELLASFALLKLDAPSKKDGVEAAVVALKEKKEWFSVQP
RPIKKKAEPKEKEEGEEGMGENGEADPVAGEEGGNAGNSKGGKGKGGRGG
EKKAATKEFKRSDDDFPTLGATVAAPAAKAEA*
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mRNA from alignment at scaffold_30:256385..258686+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9034 ID=mRNA_9034|Name=jgi.p|Nanoce1779_2|250417|organism=Nannochloropsis oceanica|type=mRNA|length=2302bp|location=Sequence derived from alignment at scaffold_30:256385..258686+ (Nannochloropsis oceanica)
CTTCTCGTCTCGGAACTCCATCGTCATCTCGTCATCCACCACCCACAACA TAAAACACCACAGAGAGAGCGTTGCACGCCAGCCGCAACAGTAGCAGCAT GACCAATTCTACTGAAGCCACGGAGGTCTCCCCTCCGGCCGCCGAGGCTG CGGAGGAGAGCAAGCCCAAGGTATGTATATGTGACCGCGTGTTGAGAGCC CCGCTTCTTCCACACCGCTCCTTCGATTCCATTCCAATCAGCAAATGTCT CCTTATTCTTGTGCGTCAATGCCACAGTATTTCTCCTTGCTATCAACTAC CTGACAATGCTTCAAGTTCTTGCCTCCTCTATCTCACCCTCCCTCCACCC GTCCATCCCTCCCTGCCTCCACCTCTTCATCAGGCTCCCAAGGCCCTCCC CGCCGGCCCCCGCCCCGACAAGCGCAATCTCGACAAGGCCGTAGGTGCCC TGCAAGCCGAGATCGACAAGCTGAACGAGAACATTGCGGGGTATGATAAA AAGATGGAGGAAATCAAGAAGAAGATTGACGTGGCCATGGCCGCACGGTC TGGAGAACAGGACGAGTTATCCAAGGAAAGGGCGAAACGTGACGCCATCA AGGCGGAGCTCGACAAGATCAAGGCGGAGAAGGTTAGTGAGCAATAAAGA AATTAGCAGAGGAGAGGTGCAACATGTCGATCTCGAAAGCATCCCACAGT ACAGTGTTGCCTACCTTTTTCCCCGTTCGTTCCTTCCCCGCCCTCCCTTC CTCCTTCTCCAGGACACCCTCTCGGCTGAGTTCGACCGAGTCAAGGGGAA GGTGGACACGGCCATCGACGCAAGCAAGAACGCGAAGCAAAGCTTGAAGT TTCGATCTGTCGAGGAGATTGACGCGGAGATGAGCCGCCTGAACAAGCTT CAGAGCACCACGTCCATGACTTTGGGCGAGGAGAAGAAGCTGGTCAAGGA GCTGGAGAGCCTCCGCGGGCAGAAGCGACAGCTGTCTGCGTTAGGGGCGT CGGAGGGACAGATCAAGAACGATAAGGACGAAAGGGCGCGGATCCAGGGG CTGTTGAAGGCGAAAAGAGACGCCTTCACCGAGTGCCTGGGGCGGCTGAC TGCGCAGAGGGAGGTGTGTGATGCGGTGCAGGCGAAGGAGAATGGCGGCG AGGGGGGAAAGAAGGGTCTAATCCCCACATTACATGATGAAAGGAACGTA TTCTGGAAAAAGAAGTCGGAGGCTATCACCCAGATCAAGGCGATTCGTGA GCAGGTTAAGGGAAAGTGGGATGAGTTCAAGGCGGCGAGGAAGGAGTGGG AGGCGTTCATGGATGAGGAGAGGAAGGTGAGGGAAGCGGAGCGGAAAGCC CAGAAGGAGGAATGGGAGAGGAAGCGAGAGGAGGAGGAGGCCAAGAAAAT TCCGTTTGAGGAGGAAATGGCTCTGTGCGACTACCTATCAAATTACTTGA AGACTACCTTTTTAGTCGAGAAGGAGACAGCCACCGCGGCGGTTGCAGCA GCTGCGGTGGCGGCGGCGGCGGGGCCGGCGGCGGCTTTTGAGCATGATGG GATGACATTACAGGCTTTCAGGAGAGAGGATGAGGAGGAGGAGCGGTGGG TGGGGGGCGGGAAGAAGAAGAAGGAGAAGAAGCCTGAGGGGGGGAAGAAG AAAAACAGCTCCTTGACACACTCTCCGGAGCTGCTGGCGTCGTTTGCGCT TCTGAAACTTGACGCACCGAGTAAGAAGGACGGGGTTGAGGCGGCGGTGG TGGCACTGAAGGAGAAGAAAGAGTGGTTCTCAGTCCAGCCCCGCCCGATC AAGAAGAAGGCGGAGCCCAAGGAAAAGGAGGAAGGGGAGGAGGGCATGGG GGAAAACGGAGAGGCGGATCCGGTTGCTGGGGAGGAGGGTGGAAATGCCG GAAACAGTAAGGGAGGGAAGGGAAAGGGGGGGAGAGGTGGGGAGAAGAAG GCGGCGACTAAGGAATTTAAACGATCGGATGACGATTTCCCCACGTTGGG CGCTACGGTGGCGGCCCCAGCGGCTAAAGCCGAGGCGTAAAAAGGGGAGA GAGATATTTTAAAATAGTTGGAGGGAACGAACGAGTGAAGATAATTTGGC TTGTCACGCATGCATGCGATAAGGTGGTAAGATCGATCGGGAAAGGAGAC AGGGAATGGATGGTAGCAAGGCTTTGAGTGAGGTAACAAATGATGAAGAA AGAAAGGAGGGATTTATAGGTAGAGCACAAATCGAGACGTCAGATAGGGT GGAGGAAGAAATTGCGCGCGTGTGATAGTGAGAGAGTGAAATACACAGGC AA
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Coding sequence (CDS) from alignment at scaffold_30:256385..258686+

>mRNA_9034 ID=mRNA_9034|Name=jgi.p|Nanoce1779_2|250417|organism=Nannochloropsis oceanica|type=CDS|length=4797bp|location=Sequence derived from alignment at scaffold_30:256385..258686+ (Nannochloropsis oceanica)
ATGACCAATTCTACTGAAGCCACGGAGGTCTCCCCTCCGGCCGCCGAGGC
TGCGGAGGAGAGCAAGCCCAAGGCTCCCAAGGCCCTCCCCGCCGGCCCCC
GCCCCGACAAGCGCAATCTCGACAAGGCCGTAGGTGCCCTGCAAGCCGAG
ATCGACAAGCTGAACGAGAACATTGCGGGGTATGATAAAAAGATGGAGGA
AATCAAGAAGAAGATTGACGTGGCCATGGCCGCACGGTCTGGAGAACAGG
ACGAGTTATCCAAGGAAAGGGCGAAACGTGACGCCATCAAGGCGGAGCTC
GACAAGATCAAGGCGGAGAAGGACACCCTCTCGGCTGAGTTCGACCGAGT
CAAGGGGAAGGTGGACACGGCCATCGACGCAAGCAAGAACGCGAAGCAAA
GCTTGAAGTTTCGATCTGTCGAGGAGATTGACGCGGAGATGAGCCGCCTG
AACAAGCTTCAGAGCACCACGTCCATGACTTTGGGCGAGGAGAAGAAGCT
GGTCAAGGAGCTGGAGAGCCTCCGCGGGCAGAAGCGACAGCTGTCTGCGT
TAGGGGCGTCGGAGGGACAGATCAAGAACGATAAGGACGAAAGGGCGCGG
ATCCAGGGGCTGTTGAAGGCGAAAAGAGACGCCTTCACCGAGTGCCTGGG
GCGGCTGACTGCGCAGAGGGAGGTGTGTGATGCGGTGCAGGCGAAGGAGA
ATGGCGGCGAGGGGGGAAAGAAGGGTCTAATCCCCACATTACATGATGAA
AGGAACGTATTCTGGAAAAAGAAGTCGGAGGCTATCACCCAGATCAAGGC
GATTCGTGAGCAGGTTAAGGGAAAGTGGGATGAGTTCAAGGCGGCGAGGA
AGGAGTGGGAGGCGTTCATGGATGAGGAGAGGAAGGTGAGGGAAGCGGAG
CGGAAAGCCCAGAAGGAGGAATGGGAGAGGAAGCGAGAGGAGGAGGAGGC
CAAGAAAATTCCGTTTGAGGAGGAAATGGCTCTGTGCGACTACCTATCAA
ATTACTTGAAGACTACCTTTTTAGTCGAGAAGGAGACAGCCACCGCGGCG
GTTGCAGCAGCTGCGGTGGCGGCGGCGGCGGGGCCGGCGGCGGCTTTTGA
GCATGATGGGATGACATTACAGGCTTTCAGGAGAGAGGATGAGGAGGAGG
AGCGGTGGGTGGGGGGCGGGAAGAAGAAGAAGGAGAAGAAGCCTGAGGGG
GGGAAGAAGAAAAACAGCTCCTTGACACACTCTCCGGAGCTGCTGGCGTC
GTTTGCGCTTCTGAAACTTGACGCACCGAGTAAGAAGGACGGGGTTGAGG
CGGCGGTGGTGGCACTGAAGGAGAAGAAAGAGTGGTTCTCAGTCCAGCCC
CGCCCGATCAAGAAGAAGGCGGAGCCCAAGGAAAAGGAGGAAGGGGAGGA
GGGCATGGGGGAAAACGGAGAGGCGGATCCGGTTGCTGGGGAGGAGGGTG
GAAATGCCGGAAACAGTAAGGGAGGGAAGGGAAAGGGGGGGAGAGGTGGG
GAGAAGAAGGCGGCGACTAAGGAATTTAAACGATCGGATGACGATTTCCC
CACGTTGGGCGCTACGGTGGCGGCCCCAGCGGCTAAAGCCGAGGCGTAAA
TGACCAATTCTACTGAAGCCACGGAGGTCTCCCCTCCGGCCGCCGAGGCT
GCGGAGGAGAGCAAGCCCAAGGCTCCCAAGGCCCTCCCCGCCGGCCCCCG
CCCCGACAAGCGCAATCTCGACAAGGCCGTAGGTGCCCTGCAAGCCGAGA
TCGACAAGCTGAACGAGAACATTGCGGGGTATGATAAAAAGATGGAGGAA
ATCAAGAAGAAGATTGACGTGGCCATGGCCGCACGGTCTGGAGAACAGGA
CGAGTTATCCAAGGAAAGGGCGAAACGTGACGCCATCAAGGCGGAGCTCG
ACAAGATCAAGGCGGAGAAGGACACCCTCTCGGCTGAGTTCGACCGAGTC
AAGGGGAAGGTGGACACGGCCATCGACGCAAGCAAGAACGCGAAGCAAAG
CTTGAAGTTTCGATCTGTCGAGGAGATTGACGCGGAGATGAGCCGCCTGA
ACAAGCTTCAGAGCACCACGTCCATGACTTTGGGCGAGGAGAAGAAGCTG
GTCAAGGAGCTGGAGAGCCTCCGCGGGCAGAAGCGACAGCTGTCTGCGTT
AGGGGCGTCGGAGGGACAGATCAAGAACGATAAGGACGAAAGGGCGCGGA
TCCAGGGGCTGTTGAAGGCGAAAAGAGACGCCTTCACCGAGTGCCTGGGG
CGGCTGACTGCGCAGAGGGAGGTGTGTGATGCGGTGCAGGCGAAGGAGAA
TGGCGGCGAGGGGGGAAAGAAGGGTCTAATCCCCACATTACATGATGAAA
GGAACGTATTCTGGAAAAAGAAGTCGGAGGCTATCACCCAGATCAAGGCG
ATTCGTGAGCAGGTTAAGGGAAAGTGGGATGAGTTCAAGGCGGCGAGGAA
GGAGTGGGAGGCGTTCATGGATGAGGAGAGGAAGGTGAGGGAAGCGGAGC
GGAAAGCCCAGAAGGAGGAATGGGAGAGGAAGCGAGAGGAGGAGGAGGCC
AAGAAAATTCCGTTTGAGGAGGAAATGGCTCTGTGCGACTACCTATCAAA
TTACTTGAAGACTACCTTTTTAGTCGAGAAGGAGACAGCCACCGCGGCGG
TTGCAGCAGCTGCGGTGGCGGCGGCGGCGGGGCCGGCGGCGGCTTTTGAG
CATGATGGGATGACATTACAGGCTTTCAGGAGAGAGGATGAGGAGGAGGA
GCGGTGGGTGGGGGGCGGGAAGAAGAAGAAGGAGAAGAAGCCTGAGGGGG
GGAAGAAGAAAAACAGCTCCTTGACACACTCTCCGGAGCTGCTGGCGTCG
TTTGCGCTTCTGAAACTTGACGCACCGAGTAAGAAGGACGGGGTTGAGGC
GGCGGTGGTGGCACTGAAGGAGAAGAAAGAGTGGTTCTCAGTCCAGCCCC
GCCCGATCAAGAAGAAGGCGGAGCCCAAGGAAAAGGAGGAAGGGGAGGAG
GGCATGGGGGAAAACGGAGAGGCGGATCCGGTTGCTGGGGAGGAGGGTGG
AAATGCCGGAAACAGTAAGGGAGGGAAGGGAAAGGGGGGGAGAGGTGGGG
AGAAGAAGGCGGCGACTAAGGAATTTAAACGATCGGATGACGATTTCCCC
ACGTTGGGCGCTACGGTGGCGGCCCCAGCGGCTAAAGCCGAGGCGTAAAT
GACCAATTCTACTGAAGCCACGGAGGTCTCCCCTCCGGCCGCCGAGGCTG
CGGAGGAGAGCAAGCCCAAGGCTCCCAAGGCCCTCCCCGCCGGCCCCCGC
CCCGACAAGCGCAATCTCGACAAGGCCGTAGGTGCCCTGCAAGCCGAGAT
CGACAAGCTGAACGAGAACATTGCGGGGTATGATAAAAAGATGGAGGAAA
TCAAGAAGAAGATTGACGTGGCCATGGCCGCACGGTCTGGAGAACAGGAC
GAGTTATCCAAGGAAAGGGCGAAACGTGACGCCATCAAGGCGGAGCTCGA
CAAGATCAAGGCGGAGAAGGACACCCTCTCGGCTGAGTTCGACCGAGTCA
AGGGGAAGGTGGACACGGCCATCGACGCAAGCAAGAACGCGAAGCAAAGC
TTGAAGTTTCGATCTGTCGAGGAGATTGACGCGGAGATGAGCCGCCTGAA
CAAGCTTCAGAGCACCACGTCCATGACTTTGGGCGAGGAGAAGAAGCTGG
TCAAGGAGCTGGAGAGCCTCCGCGGGCAGAAGCGACAGCTGTCTGCGTTA
GGGGCGTCGGAGGGACAGATCAAGAACGATAAGGACGAAAGGGCGCGGAT
CCAGGGGCTGTTGAAGGCGAAAAGAGACGCCTTCACCGAGTGCCTGGGGC
GGCTGACTGCGCAGAGGGAGGTGTGTGATGCGGTGCAGGCGAAGGAGAAT
GGCGGCGAGGGGGGAAAGAAGGGTCTAATCCCCACATTACATGATGAAAG
GAACGTATTCTGGAAAAAGAAGTCGGAGGCTATCACCCAGATCAAGGCGA
TTCGTGAGCAGGTTAAGGGAAAGTGGGATGAGTTCAAGGCGGCGAGGAAG
GAGTGGGAGGCGTTCATGGATGAGGAGAGGAAGGTGAGGGAAGCGGAGCG
GAAAGCCCAGAAGGAGGAATGGGAGAGGAAGCGAGAGGAGGAGGAGGCCA
AGAAAATTCCGTTTGAGGAGGAAATGGCTCTGTGCGACTACCTATCAAAT
TACTTGAAGACTACCTTTTTAGTCGAGAAGGAGACAGCCACCGCGGCGGT
TGCAGCAGCTGCGGTGGCGGCGGCGGCGGGGCCGGCGGCGGCTTTTGAGC
ATGATGGGATGACATTACAGGCTTTCAGGAGAGAGGATGAGGAGGAGGAG
CGGTGGGTGGGGGGCGGGAAGAAGAAGAAGGAGAAGAAGCCTGAGGGGGG
GAAGAAGAAAAACAGCTCCTTGACACACTCTCCGGAGCTGCTGGCGTCGT
TTGCGCTTCTGAAACTTGACGCACCGAGTAAGAAGGACGGGGTTGAGGCG
GCGGTGGTGGCACTGAAGGAGAAGAAAGAGTGGTTCTCAGTCCAGCCCCG
CCCGATCAAGAAGAAGGCGGAGCCCAAGGAAAAGGAGGAAGGGGAGGAGG
GCATGGGGGAAAACGGAGAGGCGGATCCGGTTGCTGGGGAGGAGGGTGGA
AATGCCGGAAACAGTAAGGGAGGGAAGGGAAAGGGGGGGAGAGGTGGGGA
GAAGAAGGCGGCGACTAAGGAATTTAAACGATCGGATGACGATTTCCCCA
CGTTGGGCGCTACGGTGGCGGCCCCAGCGGCTAAAGCCGAGGCGTAA
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Synonyms
Publications