jgi.p|Nanoce1779_2|604990, mRNA_9033 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604990
Unique NamemRNA_9033
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length828
Alignment locationscaffold_30:254854..255681 +

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Properties
Property NameValue
TranscriptId605076
TrackFilteredModels2
ProteinId604990
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:254854..255681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604990gene_9033Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604990mRNA_9033-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9033CDS_9033Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9033 ID=mRNA_9033|Name=jgi.p|Nanoce1779_2|604990|organism=Nannochloropsis oceanica|type=mRNA|length=828bp
TGCTGCTGCTCTTGCTGCTGCTGCGGGTGTTGGGGAAGGATGTGACGAGA
ATGAAGACGCGTGCCAGTGCGAGAAACACCAGTACCAGCAGCGCTACTGC
CGCCAGCTGCTGATCCTGATGCGGTAGGAGCTGTAGCATATGATTGTGTC
TGGGATGCTGCTCCTGCTAGTGCTGGTGTTGGTGCTGCAAGGGAGTACGC
ATTTGCGTAGCTTGTCGCACAGACACCGCAATAGAAAGCTCGAGAGGGGT
TGTCACTGTTTATGGCGCTGCGTTGCCATCGACGCAAGCAACGCAAGTGG
ATATATGATTGGGTGCCCGAGCACCTACGAGGAAGAGGGGAGGGAGGGAG
GGAGGGAGGGAGAAAGAGAGAGGGAGATAGGTTAGGTGAATGTCTTGCTT
AATAATACAGAGCTCATGCTTTTGCTTTGCCTTCCCATCCCTCTCTCTTC
TCCTTTCGGTCTTGCAACCTGCAAGGCGAGATGAACGTCTCGGGCTTTGT
AGGTTCCAAGCAGATGCGGCAAATTTTCTTCTTTGGACTGCTGCTGCTGC
TTGTCGACTGAGGAGAATTTGGAGGGATGGACGGAAGAGGTGCAGACGCA
CGCGCGAAAACAGAGGTCAGCATTGTTCTATTGTAGGAGGAGGAGAAGGA
GGGAGCAGGTGATGTCGTAGTTGGTGCTGAGGTAGGAGAAGAAAGTAACG
ACGACGTGCCGAGCGAGGAGATGAGCGACAAAGAACTGGAAAATTAGGCC
CAAGGCCACAGCGGAAGAAGAAGACCGTACTCAGGACACGTAGAGAGAAG
CTATCGCTCCAGCGTGATCTAGTCCTGT
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protein sequence of jgi.p|Nanoce1779_2|604990

>mRNA_9033-protein ID=mRNA_9033-protein|Name=jgi.p|Nanoce1779_2|604990|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MSCLIIQSSCFCFAFPSLSLLLSVLQPARRDERLGLCRFQADAANFLLWT
AAAACRLRRIWRDGRKRCRRTRENRGQHCSIVGGGEGGSR*
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mRNA from alignment at scaffold_30:254854..255681+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9033 ID=mRNA_9033|Name=jgi.p|Nanoce1779_2|604990|organism=Nannochloropsis oceanica|type=mRNA|length=828bp|location=Sequence derived from alignment at scaffold_30:254854..255681+ (Nannochloropsis oceanica)
TGCTGCTGCTCTTGCTGCTGCTGCGGGTGTTGGGGAAGGATGTGACGAGA
ATGAAGACGCGTGCCAGTGCGAGAAACACCAGTACCAGCAGCGCTACTGC
CGCCAGCTGCTGATCCTGATGCGGTAGGAGCTGTAGCATATGATTGTGTC
TGGGATGCTGCTCCTGCTAGTGCTGGTGTTGGTGCTGCAAGGGAGTACGC
ATTTGCGTAGCTTGTCGCACAGACACCGCAATAGAAAGCTCGAGAGGGGT
TGTCACTGTTTATGGCGCTGCGTTGCCATCGACGCAAGCAACGCAAGTGG
ATATATGATTGGGTGCCCGAGCACCTACGAGGAAGAGGGGAGGGAGGGAG
GGAGGGAGGGAGAAAGAGAGAGGGAGATAGGTTAGGTGAATGTCTTGCTT
AATAATACAGAGCTCATGCTTTTGCTTTGCCTTCCCATCCCTCTCTCTTC
TCCTTTCGGTCTTGCAACCTGCAAGGCGAGATGAACGTCTCGGGCTTTGT
AGGTTCCAAGCAGATGCGGCAAATTTTCTTCTTTGGACTGCTGCTGCTGC
TTGTCGACTGAGGAGAATTTGGAGGGATGGACGGAAGAGGTGCAGACGCA
CGCGCGAAAACAGAGGTCAGCATTGTTCTATTGTAGGAGGAGGAGAAGGA
GGGAGCAGGTGATGTCGTAGTTGGTGCTGAGGTAGGAGAAGAAAGTAACG
ACGACGTGCCGAGCGAGGAGATGAGCGACAAAGAACTGGAAAATTAGGCC
CAAGGCCACAGCGGAAGAAGAAGACCGTACTCAGGACACGTAGAGAGAAG
CTATCGCTCCAGCGTGATCTAGTCCTGT
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Coding sequence (CDS) from alignment at scaffold_30:254854..255681+

>mRNA_9033 ID=mRNA_9033|Name=jgi.p|Nanoce1779_2|604990|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at scaffold_30:254854..255681+ (Nannochloropsis oceanica)
ATGTCTTGCTTAATAATACAGAGCTCATGCTTTTGCTTTGCCTTCCCATC
CCTCTCTCTTCTCCTTTCGGTCTTGCAACCTGCAAGGCGAGATGAACGTC
TCGGGCTTTGTAGGTTCCAAGCAGATGCGGCAAATTTTCTTCTTTGGACT
GCTGCTGCTGCTTGTCGACTGAGGAGAATTTGGAGGGATGGACGGAAGAG
GTGCAGACGCACGCGCGAAAACAGAGGTCAGCATTGTTCTATTGTAGGAG
GAGGAGAAGGAGGGAGCAGGTGA
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Synonyms
Publications