jgi.p|Nanoce1779_2|250727, mRNA_9032 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|250727
Unique Name	mRNA_9032
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1201
Alignment location	scaffold_30:250136..251836 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	250813
Track	FilteredModels2
ProteinId	250727

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_30	supercontig	scaffold_30:250136..251836 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|250727	gene_9032	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|250727	mRNA_9032-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9032	CDS_9032	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_30:250136..251836+
coding sequence from alignment at scaffold_30:250136..251836+

mRNA sequence

>mRNA_9032 ID=mRNA_9032|Name=jgi.p|Nanoce1779_2|250727|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp
AGGGAGGGGAGTTATTCATAGGTCGACTAAAGGAATCCCTCCCTTCTTCC
TCTCCTCTTTCTTACAATTTCCCCCAGGTGAGCGCTCCAAGGCCGTGGAT
TACTTCGCCGCGTTGGGAACCAAATGCCCGGCTAATTTTAATCCGGCCGA
CTTCTTTATTGAGGAGTTGGCGGTGGTGCCGAGCGAATACGAGAGTAGCA
TGGCACGCTTGAGGGGAGTGACTGACGCATACGCCGAGTCGGATTTGAGG
AAGGCCAACGACAAGTGGTTTGGACGGTTGAATCCTGAGGTGCTGGCGAA
GCCGAGGAAGAAAACAGGAATTGCCATCACGGAATACCCAGCGACGGCAG
AGACGCAGTTTTGGGAGAGTTGTAAGCGAACCGTGCTTCAATACAAGCGC
GAGCCCGTCCTGACGCGCGCCCGGCTGGTGAATTCGATTCTGATGGGGTC
GTTGCTGGGCTTGGTCTACTTTGGACAAGACGACACGTACAAGGCAGTGC
AGAACAAGATCGGAGTGGCGTTCATCGTGACGATCAACCAATGCATCTCG
GCCACGTTTGGGGTCGTGCAGGAGGTCCCCCGTGATTTTGCTGTCTTTAT
GCGGGAATATCTGGCCGGGGCGAATCGCGTGGGGTCTTATTTCATGGCTC
GCACGGTCAGTGAGATCCCGTTCCAGGTGCTCTTTCCTTTTGTATTTGGG
TCTATCGTGTACGGCATGGTGGGGCTACGGCCGACGGGGGACGCATATTT
TACCTTTATCATGACGTTGATTTTGTGCGCGAACGCGGCAGTGGCAATGG
GCTATGCCTTGAGCGCGATATTGAGGAACACCACGGCGGCGATTGCGGCG
GGCTCAGTGGTAATCATGCCCATGGCGTTGTTCTCGGGGCTGCTCCTCGA
TATGGACAATATTGCTACGTGGCTTCGACCGTTGCAATACTTCTCGATCA
TCAGGTACACCTATCATGCCATCATCATCAACGAGTACGCCAACCAACCA
ATCAACTGCGGCTTTAACGTCATCTGTCCCTTCCGGAATGGAAACGCTGT
CTTGACCTATGTAGGGGCCGCACCGGACGAATTGAGCTTTAACATGGGCA
TGTTGTTTGTGTTTATGTTGGGGTTTCGGCTGGTGGCGTTTTTGGCTTTG
AAGTGGCACTCAACCCGAGTGGCGAGCTTGTAGGGTTGGGGGGGAGGGAG
G

protein sequence of jgi.p|Nanoce1779_2|250727

>mRNA_9032-protein ID=mRNA_9032-protein|Name=jgi.p|Nanoce1779_2|250727|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MARLRGVTDAYAESDLRKANDKWFGRLNPEVLAKPRKKTGIAITEYPATA
ETQFWESCKRTVLQYKREPVLTRARLVNSILMGSLLGLVYFGQDDTYKAV
QNKIGVAFIVTINQCISATFGVVQEVPRDFAVFMREYLAGANRVGSYFMA
RTVSEIPFQVLFPFVFGSIVYGMVGLRPTGDAYFTFIMTLILCANAAVAM
GYALSAILRNTTAAIAAGSVVIMPMALFSGLLLDMDNIATWLRPLQYFSI
IRYTYHAIIINEYANQPINCGFNVICPFRNGNAVLTYVGAAPDELSFNMG
MLFVFMLGFRLVAFLALKWHSTRVASL*

mRNA from alignment at scaffold_30:250136..251836+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9032 ID=mRNA_9032|Name=jgi.p|Nanoce1779_2|250727|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp|location=Sequence derived from alignment at scaffold_30:250136..251836+ (Nannochloropsis oceanica)
AGGGAGGGGAGTTATTCATAGGTCGACTAAAGGAATTCCTCCCTGACACA
CACATAAACTCACTCACTCCCTCACTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTTCTTCCTCTCCTCTTTCTTACAATTTCCCCCAGGTGAG
CGCTCCAAGGCCGTGGATTACTTCGCCGCGTTGGGAACCAAATGCCCGGC
TAATTTTAATCCGGCCGACTTCTTTATTGAGGAGTTGGCGGTGGTGCCGA
GCGAATACGAGAGTAGCATGGCACGCTTGAGGGGAGTGACTGACGCATAC
GCCGAGTCGGATTTGAGGAAGGCCAACGACAAGTGGTTTGGACGGTTGAA
TCCTGAGGTGCTGGCGAAGCCGAGGAAGAAAACAGGAATTGCCATCACGG
AATACCCAGCGACGGCAGAGACGCAGTTTTGGGAGAGTTGTAAGGTAGGG
AGGGAGGAAGGGAGACCGAAAGGCAGGGAGGAGAAGGGGGTTGGAGGTTG
GGCGCCACGCTTGACTGGATGGTAGGTCGATGCGGATGAGACCAAAGCTG
ATCTTTGCACCCTCTCCCCCCTCTCTTCCTTCCTCTTCCTTTCACCCCCC
TCCTTCTCTGCAGCGAACCGTGCTTCAATACAAGCGCGAGCCCGTCCTGA
CGCGCGCCCGGCTGGTGAATTCGATTCTGATGGGGTCGTTGCTGGGCTTG
GTCTACTTTGGACAAGACGACACGTACAAGGCAGTGCAGAACAAGATCGG
AGTGGCGTTCATCGTGACGATCAACCAATGCATCTCGGCCACGTTTGGGG
TCGTGCAGGAGGTCCCCCGTGATTTTGCTGTCTTTATGCGGGAATATCTG
GCCGGGGCGAATCGCGTGGGGTCTTATTTCATGGCTCGCACGGTCAGTGA
GATCCCGTTCCAGGTGCTCTTTCCTTTTGTATTTGGGTCTATCGTGTACG
GCATGGTGGGGCTACGGCCGACGGGGGACGCATATTTTACCTTTATCATG
ACGTTGATTTTGTGCGCGAACGCGGCAGTGGCAATGGGCTATGCCTTGAG
CGCGATATTGAGGAACACCACGGCGGCGATTGCGGCGGGCTCAGTGGTAA
TCATGCCCATGGCGTTGTTCTCGGGGCTGCTCCTCGATATGGACAATATT
GCTACGTGGCTTCGACCGTTGCAATACTTCTCGATCATCAGGTATGTGGC
ACGTGGCCCGTGCCTTCATTTGCTACTCTTCTTCCCTCTTTCCTTATGTC
CTCCTTCTCGTCCTTTGGCATTTCGTGCGCTTTGTTCCCCTCCCTCTTTC
CCTCCTTCCCTTCCTCTTCCCCTCCCTCCTTCTTTTCCCTCCATCTTTCC
CCTTTCTCCCTCTCCTTCCCTCCTTTCTCTTCCCGTTACACCTTTCTACT
GAACTCTTAACTCACTTGACTCACCTCTGTCACATACCCTCCCTCAATTT
TCAGGTACACCTATCATGCCATCATCATCAACGAGTACGCCAACCAACCA
ATCAACTGCGGCTTTAACGTCATCTGTCCCTTCCGGAATGGAAACGCTGT
CTTGACCTATGTAGGGGCCGCACCGGACGAATTGAGCTTTAACATGGGCA
TGTTGTTTGTGTTTATGTTGGGGTTTCGGCTGGTGGCGTTTTTGGCTTTG
AAGTGGCACTCAACCCGAGTGGCGAGCTTGTAGGGTTGGGGGGGAGGGAG
G

Coding sequence (CDS) from alignment at scaffold_30:250136..251836+

>mRNA_9032 ID=mRNA_9032|Name=jgi.p|Nanoce1779_2|250727|organism=Nannochloropsis oceanica|type=CDS|length=2952bp|location=Sequence derived from alignment at scaffold_30:250136..251836+ (Nannochloropsis oceanica)
ATGGCACGCTTGAGGGGAGTGACTGACGCATACGCCGAGTCGGATTTGAG
GAAGGCCAACGACAAGTGGTTTGGACGGTTGAATCCTGAGGTGCTGGCGA
AGCCGAGGAAGAAAACAGGAATTGCCATCACGGAATACCCAGCGACGGCA
GAGACGCAGTTTTGGGAGAGTTGTAAGCGAACCGTGCTTCAATACAAGCG
CGAGCCCGTCCTGACGCGCGCCCGGCTGGTGAATTCGATTCTGATGGGGT
CGTTGCTGGGCTTGGTCTACTTTGGACAAGACGACACGTACAAGGCAGTG
CAGAACAAGATCGGAGTGGCGTTCATCGTGACGATCAACCAATGCATCTC
GGCCACGTTTGGGGTCGTGCAGGAGGTCCCCCGTGATTTTGCTGTCTTTA
TGCGGGAATATCTGGCCGGGGCGAATCGCGTGGGGTCTTATTTCATGGCT
CGCACGGTCAGTGAGATCCCGTTCCAGGTGCTCTTTCCTTTTGTATTTGG
GTCTATCGTGTACGGCATGGTGGGGCTACGGCCGACGGGGGACGCATATT
TTACCTTTATCATGACGTTGATTTTGTGCGCGAACGCGGCAGTGGCAATG
GGCTATGCCTTGAGCGCGATATTGAGGAACACCACGGCGGCGATTGCGGC
GGGCTCAGTGGTAATCATGCCCATGGCGTTGTTCTCGGGGCTGCTCCTCG
ATATGGACAATATTGCTACGTGGCTTCGACCGTTGCAATACTTCTCGATC
ATCAGGTACACCTATCATGCCATCATCATCAACGAGTACGCCAACCAACC
AATCAACTGCGGCTTTAACGTCATCTGTCCCTTCCGGAATGGAAACGCTG
TCTTGACCTATGTAGGGGCCGCACCGGACGAATTGAGCTTTAACATGGGC
ATGTTGTTTGTGTTTATGTTGGGGTTTCGGCTGGTGGCGTTTTTGGCTTT
GAAGTGGCACTCAACCCGAGTGGCGAGCTTGTAGATGGCACGCTTGAGGG
GAGTGACTGACGCATACGCCGAGTCGGATTTGAGGAAGGCCAACGACAAG
TGGTTTGGACGGTTGAATCCTGAGGTGCTGGCGAAGCCGAGGAAGAAAAC
AGGAATTGCCATCACGGAATACCCAGCGACGGCAGAGACGCAGTTTTGGG
AGAGTTGTAAGCGAACCGTGCTTCAATACAAGCGCGAGCCCGTCCTGACG
CGCGCCCGGCTGGTGAATTCGATTCTGATGGGGTCGTTGCTGGGCTTGGT
CTACTTTGGACAAGACGACACGTACAAGGCAGTGCAGAACAAGATCGGAG
TGGCGTTCATCGTGACGATCAACCAATGCATCTCGGCCACGTTTGGGGTC
GTGCAGGAGGTCCCCCGTGATTTTGCTGTCTTTATGCGGGAATATCTGGC
CGGGGCGAATCGCGTGGGGTCTTATTTCATGGCTCGCACGGTCAGTGAGA
TCCCGTTCCAGGTGCTCTTTCCTTTTGTATTTGGGTCTATCGTGTACGGC
ATGGTGGGGCTACGGCCGACGGGGGACGCATATTTTACCTTTATCATGAC
GTTGATTTTGTGCGCGAACGCGGCAGTGGCAATGGGCTATGCCTTGAGCG
CGATATTGAGGAACACCACGGCGGCGATTGCGGCGGGCTCAGTGGTAATC
ATGCCCATGGCGTTGTTCTCGGGGCTGCTCCTCGATATGGACAATATTGC
TACGTGGCTTCGACCGTTGCAATACTTCTCGATCATCAGGTACACCTATC
ATGCCATCATCATCAACGAGTACGCCAACCAACCAATCAACTGCGGCTTT
AACGTCATCTGTCCCTTCCGGAATGGAAACGCTGTCTTGACCTATGTAGG
GGCCGCACCGGACGAATTGAGCTTTAACATGGGCATGTTGTTTGTGTTTA
TGTTGGGGTTTCGGCTGGTGGCGTTTTTGGCTTTGAAGTGGCACTCAACC
CGAGTGGCGAGCTTGTAGATGGCACGCTTGAGGGGAGTGACTGACGCATA
CGCCGAGTCGGATTTGAGGAAGGCCAACGACAAGTGGTTTGGACGGTTGA
ATCCTGAGGTGCTGGCGAAGCCGAGGAAGAAAACAGGAATTGCCATCACG
GAATACCCAGCGACGGCAGAGACGCAGTTTTGGGAGAGTTGTAAGCGAAC
CGTGCTTCAATACAAGCGCGAGCCCGTCCTGACGCGCGCCCGGCTGGTGA
ATTCGATTCTGATGGGGTCGTTGCTGGGCTTGGTCTACTTTGGACAAGAC
GACACGTACAAGGCAGTGCAGAACAAGATCGGAGTGGCGTTCATCGTGAC
GATCAACCAATGCATCTCGGCCACGTTTGGGGTCGTGCAGGAGGTCCCCC
GTGATTTTGCTGTCTTTATGCGGGAATATCTGGCCGGGGCGAATCGCGTG
GGGTCTTATTTCATGGCTCGCACGGTCAGTGAGATCCCGTTCCAGGTGCT
CTTTCCTTTTGTATTTGGGTCTATCGTGTACGGCATGGTGGGGCTACGGC
CGACGGGGGACGCATATTTTACCTTTATCATGACGTTGATTTTGTGCGCG
AACGCGGCAGTGGCAATGGGCTATGCCTTGAGCGCGATATTGAGGAACAC
CACGGCGGCGATTGCGGCGGGCTCAGTGGTAATCATGCCCATGGCGTTGT
TCTCGGGGCTGCTCCTCGATATGGACAATATTGCTACGTGGCTTCGACCG
TTGCAATACTTCTCGATCATCAGGTACACCTATCATGCCATCATCATCAA
CGAGTACGCCAACCAACCAATCAACTGCGGCTTTAACGTCATCTGTCCCT
TCCGGAATGGAAACGCTGTCTTGACCTATGTAGGGGCCGCACCGGACGAA
TTGAGCTTTAACATGGGCATGTTGTTTGTGTTTATGTTGGGGTTTCGGCT
GGTGGCGTTTTTGGCTTTGAAGTGGCACTCAACCCGAGTGGCGAGCTTGT
AG

Synonyms

Publications