jgi.p|Nanoce1779_2|533108, mRNA_9031 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533108
Unique NamemRNA_9031
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length498
Alignment locationscaffold_30:249063..249560 +

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Properties
Property NameValue
TranscriptId533194
TrackFilteredModels2
ProteinId533108
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:249063..249560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533108gene_9031Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533108mRNA_9031-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9031CDS_9031Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9031 ID=mRNA_9031|Name=jgi.p|Nanoce1779_2|533108|organism=Nannochloropsis oceanica|type=mRNA|length=498bp
TCGAGCCTTCTCGATTGCATTTCTCTGCGGAACCAGAAATTTGATGGCCA
CGTCTTCGTGGATGGCAAGCCCGCAGACAACACCTTCTTCGGTCTCACGG
CCTACGTGTACCAGGACGACTTGTTCTTCCCCACGCTGTCCGTAAGGGAG
CATTTGCGGTTCCATGCCATGGTGCGGATGCCCAAGGAGATTCAGAGCCA
CATCAAAGACGAGAAGGTGGAAAGCATCTTGCTCGATGTCGGGTTGCAGG
GGTGTGCAGATGCCTTGATCGGGGGCAGCAATAGCTTGATTCGAGGGATC
TCGGGCGGGGAGCGGAAGCGGGTGGCGGTGGCAACGGAGTTGTTGTCCAA
CCCCGCCGTCTTGTTTTTGGACGAGCCGACTTCAGGTGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATTCGTTTTTGTTGTACATT
TGTTATCTATGCTGTAATGTGTGCGGAACATCGTATATATTTCGGTGA
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protein sequence of jgi.p|Nanoce1779_2|533108

>mRNA_9031-protein ID=mRNA_9031-protein|Name=jgi.p|Nanoce1779_2|533108|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
SSLLDCISLRNQKFDGHVFVDGKPADNTFFGLTAYVYQDDLFFPTLSVRE
HLRFHAMVRMPKEIQSHIKDEKVESILLDVGLQGCADALIGGSNSLIRGI
SGGERKRVAVATELLSNPAVLFLDEPTSGGREGGREGGREGGRDSFLLYI
CYLCCNVCGTSYIFR*
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mRNA from alignment at scaffold_30:249063..249560+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9031 ID=mRNA_9031|Name=jgi.p|Nanoce1779_2|533108|organism=Nannochloropsis oceanica|type=mRNA|length=498bp|location=Sequence derived from alignment at scaffold_30:249063..249560+ (Nannochloropsis oceanica)
TCGAGCCTTCTCGATTGCATTTCTCTGCGGAACCAGAAATTTGATGGCCA
CGTCTTCGTGGATGGCAAGCCCGCAGACAACACCTTCTTCGGTCTCACGG
CCTACGTGTACCAGGACGACTTGTTCTTCCCCACGCTGTCCGTAAGGGAG
CATTTGCGGTTCCATGCCATGGTGCGGATGCCCAAGGAGATTCAGAGCCA
CATCAAAGACGAGAAGGTGGAAAGCATCTTGCTCGATGTCGGGTTGCAGG
GGTGTGCAGATGCCTTGATCGGGGGCAGCAATAGCTTGATTCGAGGGATC
TCGGGCGGGGAGCGGAAGCGGGTGGCGGTGGCAACGGAGTTGTTGTCCAA
CCCCGCCGTCTTGTTTTTGGACGAGCCGACTTCAGGTGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATTCGTTTTTGTTGTACATT
TGTTATCTATGCTGTAATGTGTGCGGAACATCGTATATATTTCGGTGA
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Coding sequence (CDS) from alignment at scaffold_30:249063..249560+

>mRNA_9031 ID=mRNA_9031|Name=jgi.p|Nanoce1779_2|533108|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_30:249063..249560+ (Nannochloropsis oceanica)
TCGAGCCTTCTCGATTGCATTTCTCTGCGGAACCAGAAATTTGATGGCCA
CGTCTTCGTGGATGGCAAGCCCGCAGACAACACCTTCTTCGGTCTCACGG
CCTACGTGTACCAGGACGACTTGTTCTTCCCCACGCTGTCCGTAAGGGAG
CATTTGCGGTTCCATGCCATGGTGCGGATGCCCAAGGAGATTCAGAGCCA
CATCAAAGACGAGAAGGTGGAAAGCATCTTGCTCGATGTCGGGTTGCAGG
GGTGTGCAGATGCCTTGATCGGGGGCAGCAATAGCTTGATTCGAGGGATC
TCGGGCGGGGAGCGGAAGCGGGTGGCGGTGGCAACGGAGTTGTTGTCCAA
CCCCGCCGTCTTGTTTTTGGACGAGCCGACTTCAGGTGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATTCGTTTTTGTTGTACATT
TGTTATCTATGCTGTAATGTGTGCGGAACATCGTATATATTTCGGTGA
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Synonyms
Publications