jgi.p|Nanoce1779_2|624068, mRNA_9030 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|624068
Unique Name	mRNA_9030
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1887
Alignment location	scaffold_30:243830..245716 -

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Properties


Property Name	Value
TranscriptId	624154
Track	FilteredModels2
ProteinId	624068

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_30	supercontig	scaffold_30:243830..245716 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624068	gene_9030	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9030	CDS_9030	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624068	mRNA_9030-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_30:243830..245716-
coding sequence from alignment at scaffold_30:243830..245716-

mRNA sequence

>mRNA_9030 ID=mRNA_9030|Name=jgi.p|Nanoce1779_2|624068|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp
ATGAAAAAAAGGTTGGAAAAAGAATTGGCGTCGGCGGAACGCGAGCAGGA
GTATCAGAAGGCGGCGTTGAAAAGCTCGGCTGAAGGGGCGCAGTTCGCCT
GTTCCCAAATGACCGTCAATGAGAACGACCCTCAATGGATGAATGCCCTC
GACATAAAGATACCCGATTTCTCCATCTCGGCGCACAACAAGGAGTTGTT
TCACAATTCGTCTTTAAGCATTGCACATGGGCGACGGTACGGCTTTGTGG
GGCCGAACGGGCAGGGGAAAACGACGTTGTTGAAAATGATCGCGTCCCGG
GACCTGAAGATCCCTCCAAGGATTGATGTGCTGTACGTGGAGCAGGAGGT
GGTGGCGGATGAGACGCCGGCGGTGGAGGCTGTGATGAGGGCAGATAAGG
AACGATGGGCGCTGTTGAAGGAGGAACAGGCGTTGTTGGCGAGTCTTGAC
AAGGAGGCTGACGAGGAGAAGGATGCCCGGCTGGCTGAGGTTTATGAGCA
GATGGCGGCGATTGGCGCCGACCGGGCCGAGGCCAAGGCCAGGCGAATCT
TGTATGGGTTGGGGTTTGATGAGGCAATGCAAGTGAAGCCTACGAAAAAT
TTTAGTGGTGGGTGGAGAATGAGGATCAGTTTGGCCAGGGCGTTGTTTTT
GGAACCAACGCTGTTGATGCTTGATGAACCCACGAATCACCTGGACCTGA
ATGCGGTGATTTGGTTGGATGATTATCTGCAGAAGTGGAAGAAGACACTG
TTGGTGGTGAGCCATGACCAAGATTTTCTGAACTCCGTCTGCGAAGAGAT
CTTGCATTTGGATTCGAAGAAAATCGTGCAGTACAAAGGGAACTATGATG
ACTTTAAAGAGATGGAGGAGCAGAAACGCAAGGGACAGCAACGTGCATGG
GAGAAGCAGGAAAAGATGCTCAAGGCGCTTAAATCGCAGGGACAAAGCAA
AAGCAAGGCAGAGCAGACGGCCAAGGCGAGGGGTGCGGGGAGGGAGACTG
GGGGGGCAAAGAAGAAGAAGGGGGATGCCGTGGCGACGGGGCAGGAAACG
AACGAGGTCAAGACATTGATCGAGCGGCCGAGGGAGTACACGGTGCGGCT
TGAATTCCCCGATGTCCTCCCTCTCTCCCCTCCCGTCGTCGAGGTCAAAG
ACGTCACATTCCGCTATGCGGGCAACCCGTGGATATTTGAAAATTTGAAT
TTTGGGATTGATCTTGACAGTCGAGTGTGTATTGTCGGGCCAAATGGGTC
AGGGAAGTCAACGTTGCTGAAGCTGATGACGGGGGCGTTGGAGCCGACTC
GGGGAGAGATAAGAAGGAACCCGAAATTGAGGATGGGGATTTACAATCAG
CATTTTGTGGACCGATTGCCGATGGAGCTAAGTCCAGTGGATTACCTGAG
GGGATTGTTCCCGGAGGAGACGTACCAGAGCGTCAGGAATTTGCTAGGTC
GGTATGGGTTGCAGGGACATGCGCACGAGATTCCGAATCGGGATTTGTCC
GGGGGGCAAAAAGCGCGGGTGGTGTTTGTGGAGTTGAGTTTGATGGCGCC
TCATATTTTGTTTCTCGACGAGCCCACAAATAATTTGGATATTGAGACCA
TTGATGCCTTGTGTGAGGCGATTAATGAATTCAATGGTGGGGTGGTGTTG
GTGTCGCATGACGCACGGTTGATCGAGGCGAGTGGGTGTAGAGTGTGGAT
TGTGGGGGAAAATAGGGATGTGGTTCAATTCGCGGGTGAGTTCGAGGATT
ATAAGATGGAGCTATTGAGGAAGATGGAGGCACATATGCAGGAGGAGGAG
GATAGGAAGGAAGCAGCAGCGGTGGCCAGGAAAGAGCGGTTGGCATCCAG
GGGATTGGGAGGCGCAGGGAGGGAGAGGGGGAAGTAG

protein sequence of jgi.p|Nanoce1779_2|624068

>mRNA_9030-protein ID=mRNA_9030-protein|Name=jgi.p|Nanoce1779_2|624068|organism=Nannochloropsis oceanica|type=polypeptide|length=629bp
MKKRLEKELASAEREQEYQKAALKSSAEGAQFACSQMTVNENDPQWMNAL
DIKIPDFSISAHNKELFHNSSLSIAHGRRYGFVGPNGQGKTTLLKMIASR
DLKIPPRIDVLYVEQEVVADETPAVEAVMRADKERWALLKEEQALLASLD
KEADEEKDARLAEVYEQMAAIGADRAEAKARRILYGLGFDEAMQVKPTKN
FSGGWRMRISLARALFLEPTLLMLDEPTNHLDLNAVIWLDDYLQKWKKTL
LVVSHDQDFLNSVCEEILHLDSKKIVQYKGNYDDFKEMEEQKRKGQQRAW
EKQEKMLKALKSQGQSKSKAEQTAKARGAGRETGGAKKKKGDAVATGQET
NEVKTLIERPREYTVRLEFPDVLPLSPPVVEVKDVTFRYAGNPWIFENLN
FGIDLDSRVCIVGPNGSGKSTLLKLMTGALEPTRGEIRRNPKLRMGIYNQ
HFVDRLPMELSPVDYLRGLFPEETYQSVRNLLGRYGLQGHAHEIPNRDLS
GGQKARVVFVELSLMAPHILFLDEPTNNLDIETIDALCEAINEFNGGVVL
VSHDARLIEASGCRVWIVGENRDVVQFAGEFEDYKMELLRKMEAHMQEEE
DRKEAAAVARKERLASRGLGGAGRERGK*

mRNA from alignment at scaffold_30:243830..245716-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9030 ID=mRNA_9030|Name=jgi.p|Nanoce1779_2|624068|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp|location=Sequence derived from alignment at scaffold_30:243830..245716- (Nannochloropsis oceanica)
ATGAAAAAAAGGTTGGAAAAAGAATTGGCGTCGGCGGAACGCGAGCAGGA
GTATCAGAAGGCGGCGTTGAAAAGCTCGGCTGAAGGGGCGCAGTTCGCCT
GTTCCCAAATGACCGTCAATGAGAACGACCCTCAATGGATGAATGCCCTC
GACATAAAGATACCCGATTTCTCCATCTCGGCGCACAACAAGGAGTTGTT
TCACAATTCGTCTTTAAGCATTGCACATGGGCGACGGTACGGCTTTGTGG
GGCCGAACGGGCAGGGGAAAACGACGTTGTTGAAAATGATCGCGTCCCGG
GACCTGAAGATCCCTCCAAGGATTGATGTGCTGTACGTGGAGCAGGAGGT
GGTGGCGGATGAGACGCCGGCGGTGGAGGCTGTGATGAGGGCAGATAAGG
AACGATGGGCGCTGTTGAAGGAGGAACAGGCGTTGTTGGCGAGTCTTGAC
AAGGAGGCTGACGAGGAGAAGGATGCCCGGCTGGCTGAGGTTTATGAGCA
GATGGCGGCGATTGGCGCCGACCGGGCCGAGGCCAAGGCCAGGCGAATCT
TGTATGGGTTGGGGTTTGATGAGGCAATGCAAGTGAAGCCTACGAAAAAT
TTTAGTGGTGGGTGGAGAATGAGGATCAGTTTGGCCAGGGCGTTGTTTTT
GGAACCAACGCTGTTGATGCTTGATGAACCCACGAATCACCTGGACCTGA
ATGCGGTGATTTGGTTGGATGATTATCTGCAGAAGTGGAAGAAGACACTG
TTGGTGGTGAGCCATGACCAAGATTTTCTGAACTCCGTCTGCGAAGAGAT
CTTGCATTTGGATTCGAAGAAAATCGTGCAGTACAAAGGGAACTATGATG
ACTTTAAAGAGATGGAGGAGCAGAAACGCAAGGGACAGCAACGTGCATGG
GAGAAGCAGGAAAAGATGCTCAAGGCGCTTAAATCGCAGGGACAAAGCAA
AAGCAAGGCAGAGCAGACGGCCAAGGCGAGGGGTGCGGGGAGGGAGACTG
GGGGGGCAAAGAAGAAGAAGGGGGATGCCGTGGCGACGGGGCAGGAAACG
AACGAGGTCAAGACATTGATCGAGCGGCCGAGGGAGTACACGGTGCGGCT
TGAATTCCCCGATGTCCTCCCTCTCTCCCCTCCCGTCGTCGAGGTCAAAG
ACGTCACATTCCGCTATGCGGGCAACCCGTGGATATTTGAAAATTTGAAT
TTTGGGATTGATCTTGACAGTCGAGTGTGTATTGTCGGGCCAAATGGGTC
AGGGAAGTCAACGTTGCTGAAGCTGATGACGGGGGCGTTGGAGCCGACTC
GGGGAGAGATAAGAAGGAACCCGAAATTGAGGATGGGGATTTACAATCAG
CATTTTGTGGACCGATTGCCGATGGAGCTAAGTCCAGTGGATTACCTGAG
GGGATTGTTCCCGGAGGAGACGTACCAGAGCGTCAGGAATTTGCTAGGTC
GGTATGGGTTGCAGGGACATGCGCACGAGATTCCGAATCGGGATTTGTCC
GGGGGGCAAAAAGCGCGGGTGGTGTTTGTGGAGTTGAGTTTGATGGCGCC
TCATATTTTGTTTCTCGACGAGCCCACAAATAATTTGGATATTGAGACCA
TTGATGCCTTGTGTGAGGCGATTAATGAATTCAATGGTGGGGTGGTGTTG
GTGTCGCATGACGCACGGTTGATCGAGGCGAGTGGGTGTAGAGTGTGGAT
TGTGGGGGAAAATAGGGATGTGGTTCAATTCGCGGGTGAGTTCGAGGATT
ATAAGATGGAGCTATTGAGGAAGATGGAGGCACATATGCAGGAGGAGGAG
GATAGGAAGGAAGCAGCAGCGGTGGCCAGGAAAGAGCGGTTGGCATCCAG
GGGATTGGGAGGCGCAGGGAGGGAGAGGGGGAAGTAG

Coding sequence (CDS) from alignment at scaffold_30:243830..245716-

>mRNA_9030 ID=mRNA_9030|Name=jgi.p|Nanoce1779_2|624068|organism=Nannochloropsis oceanica|type=CDS|length=1887bp|location=Sequence derived from alignment at scaffold_30:243830..245716- (Nannochloropsis oceanica)
ATGAAAAAAAGGTTGGAAAAAGAATTGGCGTCGGCGGAACGCGAGCAGGA
GTATCAGAAGGCGGCGTTGAAAAGCTCGGCTGAAGGGGCGCAGTTCGCCT
GTTCCCAAATGACCGTCAATGAGAACGACCCTCAATGGATGAATGCCCTC
GACATAAAGATACCCGATTTCTCCATCTCGGCGCACAACAAGGAGTTGTT
TCACAATTCGTCTTTAAGCATTGCACATGGGCGACGGTACGGCTTTGTGG
GGCCGAACGGGCAGGGGAAAACGACGTTGTTGAAAATGATCGCGTCCCGG
GACCTGAAGATCCCTCCAAGGATTGATGTGCTGTACGTGGAGCAGGAGGT
GGTGGCGGATGAGACGCCGGCGGTGGAGGCTGTGATGAGGGCAGATAAGG
AACGATGGGCGCTGTTGAAGGAGGAACAGGCGTTGTTGGCGAGTCTTGAC
AAGGAGGCTGACGAGGAGAAGGATGCCCGGCTGGCTGAGGTTTATGAGCA
GATGGCGGCGATTGGCGCCGACCGGGCCGAGGCCAAGGCCAGGCGAATCT
TGTATGGGTTGGGGTTTGATGAGGCAATGCAAGTGAAGCCTACGAAAAAT
TTTAGTGGTGGGTGGAGAATGAGGATCAGTTTGGCCAGGGCGTTGTTTTT
GGAACCAACGCTGTTGATGCTTGATGAACCCACGAATCACCTGGACCTGA
ATGCGGTGATTTGGTTGGATGATTATCTGCAGAAGTGGAAGAAGACACTG
TTGGTGGTGAGCCATGACCAAGATTTTCTGAACTCCGTCTGCGAAGAGAT
CTTGCATTTGGATTCGAAGAAAATCGTGCAGTACAAAGGGAACTATGATG
ACTTTAAAGAGATGGAGGAGCAGAAACGCAAGGGACAGCAACGTGCATGG
GAGAAGCAGGAAAAGATGCTCAAGGCGCTTAAATCGCAGGGACAAAGCAA
AAGCAAGGCAGAGCAGACGGCCAAGGCGAGGGGTGCGGGGAGGGAGACTG
GGGGGGCAAAGAAGAAGAAGGGGGATGCCGTGGCGACGGGGCAGGAAACG
AACGAGGTCAAGACATTGATCGAGCGGCCGAGGGAGTACACGGTGCGGCT
TGAATTCCCCGATGTCCTCCCTCTCTCCCCTCCCGTCGTCGAGGTCAAAG
ACGTCACATTCCGCTATGCGGGCAACCCGTGGATATTTGAAAATTTGAAT
TTTGGGATTGATCTTGACAGTCGAGTGTGTATTGTCGGGCCAAATGGGTC
AGGGAAGTCAACGTTGCTGAAGCTGATGACGGGGGCGTTGGAGCCGACTC
GGGGAGAGATAAGAAGGAACCCGAAATTGAGGATGGGGATTTACAATCAG
CATTTTGTGGACCGATTGCCGATGGAGCTAAGTCCAGTGGATTACCTGAG
GGGATTGTTCCCGGAGGAGACGTACCAGAGCGTCAGGAATTTGCTAGGTC
GGTATGGGTTGCAGGGACATGCGCACGAGATTCCGAATCGGGATTTGTCC
GGGGGGCAAAAAGCGCGGGTGGTGTTTGTGGAGTTGAGTTTGATGGCGCC
TCATATTTTGTTTCTCGACGAGCCCACAAATAATTTGGATATTGAGACCA
TTGATGCCTTGTGTGAGGCGATTAATGAATTCAATGGTGGGGTGGTGTTG
GTGTCGCATGACGCACGGTTGATCGAGGCGAGTGGGTGTAGAGTGTGGAT
TGTGGGGGAAAATAGGGATGTGGTTCAATTCGCGGGTGAGTTCGAGGATT
ATAAGATGGAGCTATTGAGGAAGATGGAGGCACATATGCAGGAGGAGGAG
GATAGGAAGGAAGCAGCAGCGGTGGCCAGGAAAGAGCGGTTGGCATCCAG
GGGATTGGGAGGCGCAGGGAGGGAGAGGGGGAAGTAG

Synonyms

Publications