jgi.p|Nanoce1779_2|574574, mRNA_903 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574574
Unique Name	mRNA_903
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	880
Alignment location	scaffold_2:702801..704572 +

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Properties


Property Name	Value
TranscriptId	574660
Track	FilteredModels2
ProteinId	574574

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:702801..704572 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574574	gene_903	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574574	mRNA_903-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_903	CDS_903	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:702801..704572+
coding sequence from alignment at scaffold_2:702801..704572+

mRNA sequence

>mRNA_903 ID=mRNA_903|Name=jgi.p|Nanoce1779_2|574574|organism=Nannochloropsis oceanica|type=mRNA|length=880bp
ACAGCCATCCACAGCCACCCGCAGCATAATCATGGCTTCATCATCATTCG
CCAGACGAGGGAAGGGGGTGCAGCAGGTATCATCGCCGTCGCCGCCCGAG
CTTTCCATCTTGCTACCTACCTACAACGAGCGGGAAAACTTGCCGCTAGT
GCTGTGGCTGGTGTACAAGCACTTGACGGCAAGTCACATTTCGTACGAGG
TGATAATCATTGAGGACAACAGCCCTGACGGCACTCTGGAAGTAGCGCAG
CAGTTGCAGACATTGTACGGCCCCGAGATAATCCAAATACGCCAGCGGCC
GGGCAAGTTGGGCTTGGGCAGCGCCTATATGGACGGGCTGGCCTTGGTGC
GGGGGAATCTGGTAGTGCTGATGGACGCGGATCTCTCCCACCATCCCAAG
TTTATCCCAGCGATGTACCGAAAGCAGCTAGAAGGAGGCTTTGATGTGGT
GACGGGGACACGTTACGCCTTGGGCGGAGGCGTAAGTGGGTGGGACCTAA
GACGGAAGCTCATCAGCCGAGGCGCCAACTTCCTCGCTGCCTTTCTGCTG
CAACCGGGCGTGTCGGATTTGACAGGCTCCTTCCGCTTGTACCGGAAATC
GGCATTGGCGGCAGTCATGGCGCGCGTACGATCGCGGGGTTATGTGTTTC
AAATGGAGGTGATTGTGCGAGCCCGGCAATTGGGCTTCAAAATTGCTGAG
GTGCCGATTACTTTTGTAGATCGCATCTACGGAGAGAGCAAATTGGGGGC
CTTGGAAATTGTGGCGTACCTACGCGGATTAGGCCAGCTTTTTATTTCGA
TATAAATGAAGGGCATTAGTGAATTGGGCTCAGCGTAGAACGAAGACGGG
GAAAAGACGTGTTTACATACGTAGATAGCT

protein sequence of jgi.p|Nanoce1779_2|574574

>mRNA_903-protein ID=mRNA_903-protein|Name=jgi.p|Nanoce1779_2|574574|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MASSSFARRGKGVQQVSSPSPPELSILLPTYNERENLPLVLWLVYKHLTA
SHISYEVIIIEDNSPDGTLEVAQQLQTLYGPEIIQIRQRPGKLGLGSAYM
DGLALVRGNLVVLMDADLSHHPKFIPAMYRKQLEGGFDVVTGTRYALGGG
VSGWDLRRKLISRGANFLAAFLLQPGVSDLTGSFRLYRKSALAAVMARVR
SRGYVFQMEVIVRARQLGFKIAEVPITFVDRIYGESKLGALEIVAYLRGL
GQLFISI*

mRNA from alignment at scaffold_2:702801..704572+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_903 ID=mRNA_903|Name=jgi.p|Nanoce1779_2|574574|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp|location=Sequence derived from alignment at scaffold_2:702801..704572+ (Nannochloropsis oceanica)
ACAGCCATCCACAGCCACCCGCAGCATAATCATGGCTTCATCATCATTCG
CCAGACGAGGGAAGGGGGTGCAGCAGGTATCATCGCCGTCGCCGCCCGAG
CTTTCCATCTTGCTACCTACCTACAACGAGCGGGAAAACTTGCCGCTAGT
GCTGTGGCTGGTGTACAAGCACTTGACGGCAAGGTGCGTGCGGGTAAATA
ATTGGCAGGAGGGCGCTGGAAAGAGGGAGGATGAGGAATATGGGCTCTGC
GATGATTCAACGGAGACACAGGGCGTCTCGCCGCCTGTGGTGTGTGTCTG
TACAGGGCGCACACACACAAGTCCTCGCAATCGTTGATCGGAGATAGAAC
AGGATGGAGTGAGATCGGTGCATTATTATAGCTTCTCTCTTTACCTTCGG
CAGTGTCAAGAGCGGATGATGCCAAACTCCCTTCCATTAAGGGGTGATTG
TGGTGGGATTGGCTTCTGCTTTGCGCATCCCCTCACGGATCTGTACTTTC
TCCAACTGTGCACCAAGCCTATTTCTCCCCCTCTATCTCTTAACAACATT
TATAGTCACATTTCGTACGAGGTGATAATCATTGAGGACAACAGCCCTGA
CGGCACTCTGGAAGTAGCGCAGCAGTTGCAGGTAAGTAGGAGTTGATGTT
GGGCAAGGAGACGGGCATCTTTGTCAGAATATAAAAGTCGGGTCAAGTTT
GCCAGGAAGATGGCTATATATATGGATATGGATAAATATCTAGATGTAGA
TATCAGCAAACATAGATGGAGATAGATCAAGATAGACAGATAAGGACATA
TGCACACATAAGAAACAGACATAGACAACACAGACTCTCGCCTCTTGTAC
ATTCATACACCCCCAAATGTTGCAGACATTGTACGGCCCCGAGATAATCC
AAATACGCCAGCGGCCGGGCAAGTTGGGCTTGGGCAGCGCCTATATGGAC
GGGCTGGCCTTGGTGCGGGGGAATCTGGTAGTGCTGATGGACGCGGATCT
CTCCCACCATCCCAAGTTTATCCCAGCGATGTACCGGTGCGTGTTTGTGG
GTTGATTGCGATTGAACGCAAGGGTAGTCACAGAAGGGGATATTTGGTAC
GAATTAATGAAATACAAAAAAAAATCGGCGGGCAATAGTTCATCAGGAAA
TACGGGCTGGAGCACGGCCTCCACATGCTGCCGCCAGGTTATACCACGTA
CCTTGGGGAAGGTGGTTAGGTGTCATGAATGTGTTCATAGTATTTCATGC
GCGATTTACTCACGTCCATCTACGGCACGCACTTCCACACATGCTGATCC
ACAATATGACAGAAAGCAGCTAGAAGGAGGCTTTGATGTGGTGACGGGGA
CACGTTACGCCTTGGGCGGAGGCGTAAGTGGGTGGGACCTAAGACGGAAG
CTCATCAGCCGAGGCGCCAACTTCCTCGCTGCCTTTCTGCTGCAACCGGG
CGTGTCGGATTTGACAGGCTCCTTCCGCTTGTACCGGAAATCGGCATTGG
CGGCAGTCATGGCGCGCGTACGATCGCGGGGTTATGTGTTTCAAATGGAG
GTGATTGTGCGAGCCCGGCAATTGGGCTTCAAAATTGCTGAGGTGCCGAT
TACTTTTGTAGATCGCATCTACGGAGAGAGCAAATTGGGGGCCTTGGAAA
TTGTGGCGTACCTACGCGGATTAGGCCAGCTTTTTATTTCGATATAAATG
AAGGGCATTAGTGAATTGGGCTCAGCGTAGAACGAAGACGGGGAAAAGAC
GTGTTTACATACGTAGATAGCT

Coding sequence (CDS) from alignment at scaffold_2:702801..704572+

>mRNA_903 ID=mRNA_903|Name=jgi.p|Nanoce1779_2|574574|organism=Nannochloropsis oceanica|type=CDS|length=3096bp|location=Sequence derived from alignment at scaffold_2:702801..704572+ (Nannochloropsis oceanica)
ATGGCTTCATCATCATTCGCCAGACGAGGGAAGGGGGTGCAGCAGGTATC
ATCGCCGTCGCCGCCCGAGCTTTCCATCTTGCTACCTACCTACAACGAGC
GGGAAAACTTGCCGCTAGTGCTGTGGCTGGTGTACAAGCACTTGACGGCA
AGTCACATTTCGTACGAGGTGATAATCATTGAGGACAACAGCCCTGACGG
CACTCTGGAAGTAGCGCAGCAGTTGCAGACATTGTACGGCCCCGAGATAA
TCCAAATACGCCAGCGGCCGGGCAAGTTGGGCTTGGGCAGCGCCTATATG
GACGGGCTGGCCTTGGTGCGGGGGAATCTGGTAGTGCTGATGGACGCGGA
TCTCTCCCACCATCCCAAGTTTATCCCAGCGATGTACCGAAAGCAGCTAG
AAGGAGGCTTTGATGTGGTGACGGGGACACGTTACGCCTTGGGCGGAGGC
GTAAGTGGGTGGGACCTAAGACGGAAGCTCATCAGCCGAGGCGCCAACTT
CCTCGCTGCCTTTCTGCTGCAACCGGGCGTGTCGGATTTGACAGGCTCCT
TCCGCTTGTACCGGAAATCGGCATTGGCGGCAGTCATGGCGCGCGTACGA
TCGCGGGGTTATGTGTTTCAAATGGAGGTGATTGTGCGAGCCCGGCAATT
GGGCTTCAAAATTGCTGAGGTGCCGATTACTTTTGTAGATCGCATCTACG
GAGAGAGCAAATTGGGGGCCTTGGAAATTGTGGCGTACCTACGCGGATTA
GGCCAGCTTTTTATTTCGATATAAATGGCTTCATCATCATTCGCCAGACG
AGGGAAGGGGGTGCAGCAGGTATCATCGCCGTCGCCGCCCGAGCTTTCCA
TCTTGCTACCTACCTACAACGAGCGGGAAAACTTGCCGCTAGTGCTGTGG
CTGGTGTACAAGCACTTGACGGCAAGTCACATTTCGTACGAGGTGATAAT
CATTGAGGACAACAGCCCTGACGGCACTCTGGAAGTAGCGCAGCAGTTGC
AGACATTGTACGGCCCCGAGATAATCCAAATACGCCAGCGGCCGGGCAAG
TTGGGCTTGGGCAGCGCCTATATGGACGGGCTGGCCTTGGTGCGGGGGAA
TCTGGTAGTGCTGATGGACGCGGATCTCTCCCACCATCCCAAGTTTATCC
CAGCGATGTACCGAAAGCAGCTAGAAGGAGGCTTTGATGTGGTGACGGGG
ACACGTTACGCCTTGGGCGGAGGCGTAAGTGGGTGGGACCTAAGACGGAA
GCTCATCAGCCGAGGCGCCAACTTCCTCGCTGCCTTTCTGCTGCAACCGG
GCGTGTCGGATTTGACAGGCTCCTTCCGCTTGTACCGGAAATCGGCATTG
GCGGCAGTCATGGCGCGCGTACGATCGCGGGGTTATGTGTTTCAAATGGA
GGTGATTGTGCGAGCCCGGCAATTGGGCTTCAAAATTGCTGAGGTGCCGA
TTACTTTTGTAGATCGCATCTACGGAGAGAGCAAATTGGGGGCCTTGGAA
ATTGTGGCGTACCTACGCGGATTAGGCCAGCTTTTTATTTCGATATAAAT
GGCTTCATCATCATTCGCCAGACGAGGGAAGGGGGTGCAGCAGGTATCAT
CGCCGTCGCCGCCCGAGCTTTCCATCTTGCTACCTACCTACAACGAGCGG
GAAAACTTGCCGCTAGTGCTGTGGCTGGTGTACAAGCACTTGACGGCAAG
TCACATTTCGTACGAGGTGATAATCATTGAGGACAACAGCCCTGACGGCA
CTCTGGAAGTAGCGCAGCAGTTGCAGACATTGTACGGCCCCGAGATAATC
CAAATACGCCAGCGGCCGGGCAAGTTGGGCTTGGGCAGCGCCTATATGGA
CGGGCTGGCCTTGGTGCGGGGGAATCTGGTAGTGCTGATGGACGCGGATC
TCTCCCACCATCCCAAGTTTATCCCAGCGATGTACCGAAAGCAGCTAGAA
GGAGGCTTTGATGTGGTGACGGGGACACGTTACGCCTTGGGCGGAGGCGT
AAGTGGGTGGGACCTAAGACGGAAGCTCATCAGCCGAGGCGCCAACTTCC
TCGCTGCCTTTCTGCTGCAACCGGGCGTGTCGGATTTGACAGGCTCCTTC
CGCTTGTACCGGAAATCGGCATTGGCGGCAGTCATGGCGCGCGTACGATC
GCGGGGTTATGTGTTTCAAATGGAGGTGATTGTGCGAGCCCGGCAATTGG
GCTTCAAAATTGCTGAGGTGCCGATTACTTTTGTAGATCGCATCTACGGA
GAGAGCAAATTGGGGGCCTTGGAAATTGTGGCGTACCTACGCGGATTAGG
CCAGCTTTTTATTTCGATATAAATGGCTTCATCATCATTCGCCAGACGAG
GGAAGGGGGTGCAGCAGGTATCATCGCCGTCGCCGCCCGAGCTTTCCATC
TTGCTACCTACCTACAACGAGCGGGAAAACTTGCCGCTAGTGCTGTGGCT
GGTGTACAAGCACTTGACGGCAAGTCACATTTCGTACGAGGTGATAATCA
TTGAGGACAACAGCCCTGACGGCACTCTGGAAGTAGCGCAGCAGTTGCAG
ACATTGTACGGCCCCGAGATAATCCAAATACGCCAGCGGCCGGGCAAGTT
GGGCTTGGGCAGCGCCTATATGGACGGGCTGGCCTTGGTGCGGGGGAATC
TGGTAGTGCTGATGGACGCGGATCTCTCCCACCATCCCAAGTTTATCCCA
GCGATGTACCGAAAGCAGCTAGAAGGAGGCTTTGATGTGGTGACGGGGAC
ACGTTACGCCTTGGGCGGAGGCGTAAGTGGGTGGGACCTAAGACGGAAGC
TCATCAGCCGAGGCGCCAACTTCCTCGCTGCCTTTCTGCTGCAACCGGGC
GTGTCGGATTTGACAGGCTCCTTCCGCTTGTACCGGAAATCGGCATTGGC
GGCAGTCATGGCGCGCGTACGATCGCGGGGTTATGTGTTTCAAATGGAGG
TGATTGTGCGAGCCCGGCAATTGGGCTTCAAAATTGCTGAGGTGCCGATT
ACTTTTGTAGATCGCATCTACGGAGAGAGCAAATTGGGGGCCTTGGAAAT
TGTGGCGTACCTACGCGGATTAGGCCAGCTTTTTATTTCGATATAA

Synonyms

Publications