jgi.p|Nanoce1779_2|604976, mRNA_9029 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604976
Unique NamemRNA_9029
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1811
Alignment locationscaffold_30:240849..242659 -

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Properties
Property NameValue
TranscriptId605062
TrackFilteredModels2
ProteinId604976
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:240849..242659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604976gene_9029Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604976mRNA_9029-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9029CDS_9029Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9029 ID=mRNA_9029|Name=jgi.p|Nanoce1779_2|604976|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp
CAGAACCATGGTCAAGACTGCTGCCGTCGGCCTCCTGGCCTTGGCCGGGC
TCACCTCTGCCTTTGTGCCCACCAACACGAACCTCCGCATGTCTAACAAG
TGGGTGACCAAGGCCAAGGACGCCTCCTTCACCCGCAACCTGATGATGAA
GCTGGGCGCGGGTGAAAAGGTCATCCTCATTGGTGTGGCCGCTGACTCCG
GGTGCGGCAAGTCCACCTTCATGCGACGCCTGACCAACATATTCGGCGGA
AGCAACGTTGGGCCCTTGGGTGGTGGCTTCGACAACGGCGGATGGGAAAC
TAATACGCTTGTGTCCGACACCACCACTGTTATTTGCCTGGATGACTACC
ATGCCAATGACCGTGGGGGCCGCAAGATCACGGGCCGCACTGCCCTTGAG
GCGGCGGAGCAGAACTTCGACCTCATGTACGAGCAGCTTAAGGCCTTGAA
GGAGGGCAAGACGGTGGCCAAGCCCATCTACAATCACGTCAACGGCACCT
TGGACAAGCCAGAGGATGTAGTGCCCACTCCTATTGTCATCGTCGAGGGG
CTGCACCCTTGGTATGATGCCCGTGTGAAGGACCTCTTGGACTACACTAT
CTACCTGGACATCTCCGACGAGATTAAGCGTGCCTGGAAAATCCAGCGTG
ATATGGCTGAGCGTGGCTGGACTCTGGACCAGGTGGAGGCCGAGATTGAG
AAGCGCAAGCCCGACTTCAACAAGTTCGTGGGCCCCCAGAAGGAGGTCGC
CGATGCCGTCATCCAGGTCCTCCCCACCGAGCTGACCAACGACCCGGAAG
GCAAGATCCTCCGTGTGCGTCTCATCCAGAAGGATGACGGGAAATACGAG
CCCGTCTACCTGTTCGATCAGGGCTCCACAGTCTCGTGGGTGCCCTGCGG
GAAGCAGCTCACCTGCTCTTACCCCGGCATCAAGTTCGGCTCCGGCCCTG
ACCAGTGGTTCAACAACGCCGTGAACATCGTGGAGATGGACGGCCAGTTC
GACAACTTGGAAGAACTGTCTTACGTGGAGAAGCACCTCGGGAACACGGC
CTCCAAGTACGCAGGAGAGATCACGGCGCAGATGTTGAAAAACAAGGGGG
CTCCGGGTAGCTTGAACGGCTCGGGCTTGTTCCAGACAATCGTGAGCTTG
AAGATTAGGGAGGTCTACGAGAAGCTGAGCGGAAAGAAGGTGGATGCCTC
GGTGAAGGCGCCGGTGGCGGCTTAAATTGATTTTTGAGTTTATCTATGGG
TTCGTAGGTTTGGGGTGGATTGGAGGCGAACAAGGGTGTGTGTGAGAGTA
AAAGAGTGAGAGAAAGGAACTGCTTCCTGTCCAGTTCTTCTTCCCTCGCC
TCCCTCTATTCCCCTTTTCTGCTTCAGGAACAAGACGAACAAAATTATGT
GGTGTTTTTGTCTGTTCTGTGTGTGTGCGCATGAATACTTATTCTCCCTT
TTTGGTACTGAGGTGGTGAGATTGTGAGAGCGGAGGAGCAGTTGGTGAAG
TGAGAAAGAACGTGAGAGAAACACATCAAGATAAGGGAATGTCTTCTCGT
TCTTGTTGGTCTTCCCTCAGTGGTCAATCACAGAGGCATGGATGTCTCAT
CCTTTGATGTTTTTCCTCTTTTTTCCCCAGTTCTTGTACGGTTCCAGTCT
CACCAGCAACAACATAAGGAAAGAATTAAAATAAGAGTAATATTCAAAAA
CGAAATAGGGAAATCAATCAGGAAACGATCTTCCTACATGCGCCTCTTCA
GGGAAGAGATCGTTGTAAAAGGCATTTTCCGAAGCAACCAAGACAGCACG
CATATCGGCAC
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protein sequence of jgi.p|Nanoce1779_2|604976

>mRNA_9029-protein ID=mRNA_9029-protein|Name=jgi.p|Nanoce1779_2|604976|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MVKTAAVGLLALAGLTSAFVPTNTNLRMSNKWVTKAKDASFTRNLMMKLG
AGEKVILIGVAADSGCGKSTFMRRLTNIFGGSNVGPLGGGFDNGGWETNT
LVSDTTTVICLDDYHANDRGGRKITGRTALEAAEQNFDLMYEQLKALKEG
KTVAKPIYNHVNGTLDKPEDVVPTPIVIVEGLHPWYDARVKDLLDYTIYL
DISDEIKRAWKIQRDMAERGWTLDQVEAEIEKRKPDFNKFVGPQKEVADA
VIQVLPTELTNDPEGKILRVRLIQKDDGKYEPVYLFDQGSTVSWVPCGKQ
LTCSYPGIKFGSGPDQWFNNAVNIVEMDGQFDNLEELSYVEKHLGNTASK
YAGEITAQMLKNKGAPGSLNGSGLFQTIVSLKIREVYEKLSGKKVDASVK
APVAA*
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mRNA from alignment at scaffold_30:240849..242659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9029 ID=mRNA_9029|Name=jgi.p|Nanoce1779_2|604976|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp|location=Sequence derived from alignment at scaffold_30:240849..242659- (Nannochloropsis oceanica)
CAGAACCATGGTCAAGACTGCTGCCGTCGGCCTCCTGGCCTTGGCCGGGC
TCACCTCTGCCTTTGTGCCCACCAACACGAACCTCCGCATGTCTAACAAG
TGGGTGACCAAGGCCAAGGACGCCTCCTTCACCCGCAACCTGATGATGAA
GCTGGGCGCGGGTGAAAAGGTCATCCTCATTGGTGTGGCCGCTGACTCCG
GGTGCGGCAAGTCCACCTTCATGCGACGCCTGACCAACATATTCGGCGGA
AGCAACGTTGGGCCCTTGGGTGGTGGCTTCGACAACGGCGGATGGGAAAC
TAATACGCTTGTGTCCGACACCACCACTGTTATTTGCCTGGATGACTACC
ATGCCAATGACCGTGGGGGCCGCAAGATCACGGGCCGCACTGCCCTTGAG
GCGGCGGAGCAGAACTTCGACCTCATGTACGAGCAGCTTAAGGCCTTGAA
GGAGGGCAAGACGGTGGCCAAGCCCATCTACAATCACGTCAACGGCACCT
TGGACAAGCCAGAGGATGTAGTGCCCACTCCTATTGTCATCGTCGAGGGG
CTGCACCCTTGGTATGATGCCCGTGTGAAGGACCTCTTGGACTACACTAT
CTACCTGGACATCTCCGACGAGATTAAGCGTGCCTGGAAAATCCAGCGTG
ATATGGCTGAGCGTGGCTGGACTCTGGACCAGGTGGAGGCCGAGATTGAG
AAGCGCAAGCCCGACTTCAACAAGTTCGTGGGCCCCCAGAAGGAGGTCGC
CGATGCCGTCATCCAGGTCCTCCCCACCGAGCTGACCAACGACCCGGAAG
GCAAGATCCTCCGTGTGCGTCTCATCCAGAAGGATGACGGGAAATACGAG
CCCGTCTACCTGTTCGATCAGGGCTCCACAGTCTCGTGGGTGCCCTGCGG
GAAGCAGCTCACCTGCTCTTACCCCGGCATCAAGTTCGGCTCCGGCCCTG
ACCAGTGGTTCAACAACGCCGTGAACATCGTGGAGATGGACGGCCAGTTC
GACAACTTGGAAGAACTGTCTTACGTGGAGAAGCACCTCGGGAACACGGC
CTCCAAGTACGCAGGAGAGATCACGGCGCAGATGTTGAAAAACAAGGGGG
CTCCGGGTAGCTTGAACGGCTCGGGCTTGTTCCAGACAATCGTGAGCTTG
AAGATTAGGGAGGTCTACGAGAAGCTGAGCGGAAAGAAGGTGGATGCCTC
GGTGAAGGCGCCGGTGGCGGCTTAAATTGATTTTTGAGTTTATCTATGGG
TTCGTAGGTTTGGGGTGGATTGGAGGCGAACAAGGGTGTGTGTGAGAGTA
AAAGAGTGAGAGAAAGGAACTGCTTCCTGTCCAGTTCTTCTTCCCTCGCC
TCCCTCTATTCCCCTTTTCTGCTTCAGGAACAAGACGAACAAAATTATGT
GGTGTTTTTGTCTGTTCTGTGTGTGTGCGCATGAATACTTATTCTCCCTT
TTTGGTACTGAGGTGGTGAGATTGTGAGAGCGGAGGAGCAGTTGGTGAAG
TGAGAAAGAACGTGAGAGAAACACATCAAGATAAGGGAATGTCTTCTCGT
TCTTGTTGGTCTTCCCTCAGTGGTCAATCACAGAGGCATGGATGTCTCAT
CCTTTGATGTTTTTCCTCTTTTTTCCCCAGTTCTTGTACGGTTCCAGTCT
CACCAGCAACAACATAAGGAAAGAATTAAAATAAGAGTAATATTCAAAAA
CGAAATAGGGAAATCAATCAGGAAACGATCTTCCTACATGCGCCTCTTCA
GGGAAGAGATCGTTGTAAAAGGCATTTTCCGAAGCAACCAAGACAGCACG
CATATCGGCAC
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Coding sequence (CDS) from alignment at scaffold_30:240849..242659-

>mRNA_9029 ID=mRNA_9029|Name=jgi.p|Nanoce1779_2|604976|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at scaffold_30:240849..242659- (Nannochloropsis oceanica)
ATGGTCAAGACTGCTGCCGTCGGCCTCCTGGCCTTGGCCGGGCTCACCTC
TGCCTTTGTGCCCACCAACACGAACCTCCGCATGTCTAACAAGTGGGTGA
CCAAGGCCAAGGACGCCTCCTTCACCCGCAACCTGATGATGAAGCTGGGC
GCGGGTGAAAAGGTCATCCTCATTGGTGTGGCCGCTGACTCCGGGTGCGG
CAAGTCCACCTTCATGCGACGCCTGACCAACATATTCGGCGGAAGCAACG
TTGGGCCCTTGGGTGGTGGCTTCGACAACGGCGGATGGGAAACTAATACG
CTTGTGTCCGACACCACCACTGTTATTTGCCTGGATGACTACCATGCCAA
TGACCGTGGGGGCCGCAAGATCACGGGCCGCACTGCCCTTGAGGCGGCGG
AGCAGAACTTCGACCTCATGTACGAGCAGCTTAAGGCCTTGAAGGAGGGC
AAGACGGTGGCCAAGCCCATCTACAATCACGTCAACGGCACCTTGGACAA
GCCAGAGGATGTAGTGCCCACTCCTATTGTCATCGTCGAGGGGCTGCACC
CTTGGTATGATGCCCGTGTGAAGGACCTCTTGGACTACACTATCTACCTG
GACATCTCCGACGAGATTAAGCGTGCCTGGAAAATCCAGCGTGATATGGC
TGAGCGTGGCTGGACTCTGGACCAGGTGGAGGCCGAGATTGAGAAGCGCA
AGCCCGACTTCAACAAGTTCGTGGGCCCCCAGAAGGAGGTCGCCGATGCC
GTCATCCAGGTCCTCCCCACCGAGCTGACCAACGACCCGGAAGGCAAGAT
CCTCCGTGTGCGTCTCATCCAGAAGGATGACGGGAAATACGAGCCCGTCT
ACCTGTTCGATCAGGGCTCCACAGTCTCGTGGGTGCCCTGCGGGAAGCAG
CTCACCTGCTCTTACCCCGGCATCAAGTTCGGCTCCGGCCCTGACCAGTG
GTTCAACAACGCCGTGAACATCGTGGAGATGGACGGCCAGTTCGACAACT
TGGAAGAACTGTCTTACGTGGAGAAGCACCTCGGGAACACGGCCTCCAAG
TACGCAGGAGAGATCACGGCGCAGATGTTGAAAAACAAGGGGGCTCCGGG
TAGCTTGAACGGCTCGGGCTTGTTCCAGACAATCGTGAGCTTGAAGATTA
GGGAGGTCTACGAGAAGCTGAGCGGAAAGAAGGTGGATGCCTCGGTGAAG
GCGCCGGTGGCGGCTTAA
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Synonyms
Publications