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Properties
| Property Name | Value |
|---|
| TranscriptId | 605060 |
| Track | FilteredModels2 |
| ProteinId | 604974 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_30 | supercontig | scaffold_30:238899..240844 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9028 ID=mRNA_9028|Name=jgi.p|Nanoce1779_2|604974|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
ACAGGCGCGCTAATTTCACGTCTTACGGACCATCACCACTACCGCTAGCT
GTACCAGGATCCAATCGTGGGACTGGATAAGCCACGATGACAAGAGTTGT
GGCTGGCGAGCTGGATGTGGTCAGCAAGGTGACCTCCACGCACGGCATTA
CTGAGGACGATAACCCACTCCTCATGTCGACCAGCCTGGCCAGCAACCAA
GAAGGAGTCCTAGGGTTTGCCTCCGGGCTCGTCGCCGGGGTAATAGGGGT
CTTGACAGGCTATCCTCTCGACACATTGAAGGTCAAAATGCAAGTATACG
GCTCGGGGGCTCAGGTCTCTTTACTGGATGGAAGCGCAGGGCGGAACCCG
TTCAAAGTTGTGAGGCAACTTTTTCGGGGAGTCTTACCCCCGCTGGCCAG
CACCGGCCTGGTTCAAACGCTCAACTTCGGCGTTTACGATAACACCTTGC
GATACCTTCGAGCCCAACGAGATCTAGAAGTGAAGGCTCAAGATGCCGCT
GCTTCCGCTGCTGCTTGTGCTTGTGTTCCTTGCGCTACTATTGTAAATGG
CAACACACTCTCCGATTACTTTCTGGCTGGGTCTATGGGGGGCGCGGCGA
TCAGTGTGATCACCTGCCCGGCGTCGTTGGTGAAGATACAGGTGCAGACA
GCGACTAACAGTAGCGTTACATACTGGAGCATCTTGGCGGGTATGCGGCG
GAAGGGGCTGGTGGCGGGGTATTATCGTGCATTCCTTCCCGATATTCTCA
ACCAAATGTGCGGCCGTGGCGTGTATATGTGCACCTACGAAGGACTCAAG
CGCGTTATGCGTCCACCAACTGCCTCCTCCGCCGGCTCTGGCCTCCCCCT
TCTCCTCCACCACCAGCAGCAGCAAATGCAGCCACAAATGCAGTCTCAGC
CCCTTTATCAACGTATTGTAGCCGGTGCACTTGCAGGGATCTGTGGCTGG
CTGGTCATTTACCCTTTGGATGTAATAAAAAGTAGGCTACAAGCGGACGC
GTTGGCCCCAGGACACAACAAGTACACCGGCATGACCGACTGTTTCCGAG
TCAGCTATGGACAGGGTGGCATCCGTTCCCTTTATTCAGGCCTAGGATTT
ACTTTGCTAAGGGCCGTGCCTGTCGCCAGTGTAATTTTGCCTTGTTACGA
TGCGACGTATTTTTTGCTGTCGCGGTATATGGACGAGTAGGCAGGGAGGG
AGAAAAGGGTAGGGAGTTGGCTTGTGAGGTGTGGGGGAGAGTGTGTAGTT
AGCCAAAGGGAAACGTGATAGAATGGACCATCACAAATATGATGTATTTG
GCCACCACTTGATGCATGTAAAGTATGTAACAAATAAAGGGAGTCTGGAT
TTGTGG back to topprotein sequence of jgi.p|Nanoce1779_2|604974 >mRNA_9028-protein ID=mRNA_9028-protein|Name=jgi.p|Nanoce1779_2|604974|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MTRVVAGELDVVSKVTSTHGITEDDNPLLMSTSLASNQEGVLGFASGLVA
GVIGVLTGYPLDTLKVKMQVYGSGAQVSLLDGSAGRNPFKVVRQLFRGVL
PPLASTGLVQTLNFGVYDNTLRYLRAQRDLEVKAQDAAASAAACACVPCA
TIVNGNTLSDYFLAGSMGGAAISVITCPASLVKIQVQTATNSSVTYWSIL
AGMRRKGLVAGYYRAFLPDILNQMCGRGVYMCTYEGLKRVMRPPTASSAG
SGLPLLLHHQQQQMQPQMQSQPLYQRIVAGALAGICGWLVIYPLDVIKSR
LQADALAPGHNKYTGMTDCFRVSYGQGGIRSLYSGLGFTLLRAVPVASVI
LPCYDATYFLLSRYMDE* back to topmRNA from alignment at scaffold_30:238899..240844+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9028 ID=mRNA_9028|Name=jgi.p|Nanoce1779_2|604974|organism=Nannochloropsis oceanica|type=mRNA|length=1946bp|location=Sequence derived from alignment at scaffold_30:238899..240844+ (Nannochloropsis oceanica)
ACAGGCGCGCTAATTTCACGTCTTACGGACCATCACCACTACCGCTAGCT
GTACCAGGATCCAATCGTGGGACTGGATAAGCCACGATGACAAGAGTTGT
GGCTGGCGAGCTGGATGTGGTCAGCAAGGTGGTAAGTGCGCGGAGGAAGG
GGGTTCGTGAGCTCGAGACGAGTAGATTAGACGGACAAGAAACGCAGTTT
AGGGGTAGCAATCGCAGTGCGTAATGCTGTCTCTGTGTGTGTATAATGTA
ATAAGATAGAAGGTTCTGATATAGGGCGGCGTGTCTCTCGTTTACATGCC
AGTACAGCGGGCCGTAAGCGGAAGCGCCGGGCGGGGAAGCGGGCAGTGCA
TGTGAGCCGGCACTCCAGCAAATGCAAGATTATGCTCATCGCTACCTGTC
CCTTTCCTCTTTCGACTCAATAAAAAAGACCTCCACGCACGGCATTACTG
AGGACGATAACCCACTCCTCATGTCGACCAGCCTGGCCAGCAACCAAGAA
GGAGTCCTAGGGTTTGCCTCCGGGCTCGTCGCCGGGGTAATAGGGGTCTT
GACAGGCTATCCTCTCGACACATTGAAGGTCAAAATGCAAGTATACGGCT
CGGGGGCTCAGGTCTCTTTACTGGATGGAAGCGCAGGGCGGAACCCGTTC
AAAGTTGTGAGGCAACTTTTTCGGGGAGTCTTACCCCCGCTGGCCAGCAC
CGGTAAGGGAGGACGGGGGTCACATCAAAGGGAGGCGTTTTGTTTGAGCT
TTTATCAGGGATGACATTATTTCATATAAAGGGGCTACGGAGGTGTGGAC
ATGGGACTACCAGAATTCGGAGGCAGGTGTCTCATTTCTTCATTCCATCT
CTTCCCTCCATCGCTTCCTCCCTACTTATGATTTCTAGGCCTGGTTCAAA
CGCTCAACTTCGGCGTTTACGATAACACCTTGCGATACCTTCGAGCCCAA
CGAGATCTAGAAGTGAAGGCTCAAGATGCCGCTGCTTCCGCTGCTGCTTG
TGCTTGTGTTCCTTGCGCTACTATTGTAAATGGCAACACACTCTCCGATT
ACTTTCTGGCTGGGTCTATGGGGGGCGCGGCGATCAGTGTGATCACCTGC
CCGGCGTCGTTGGTGAAGATACAGGTGCAGACAGCGACTAACAGTAGCGT
TACATACTGGAGCATCTTGGCGGGTATGCGGCGGAAGGGGCTGGTGGCGG
GGTATTATCGGTGAGGGGGGAGGGAGAGAGGGAGGGAGGGAAGGGTGGGG
TGGCTCTGTCGACTACCAATGTCTAAGCTTCATGTCCTTCGGTTTCTTTC
TCTTTCAATCTATCCAGTGCATTCCTTCCCGATATTCTCAACCAAATGTG
CGGCCGTGGCGTGTATATGTGCACCTACGAAGGACTCAAGCGCGTTATGC
GTCCACCAACTGCCTCCTCCGCCGGCTCTGGCCTCCCCCTTCTCCTCCAC
CACCAGCAGCAGCAAATGCAGCCACAAATGCAGTCTCAGCCCCTTTATCA
ACGTATTGTAGCCGGTGCACTTGCAGGGATCTGTGGCTGGCTGGTCATTT
ACCCTTTGGATGTAATAAAAAGTAGGCTACAAGCGGACGCGTTGGCCCCA
GGACACAACAAGTACACCGGCATGACCGACTGTTTCCGAGTCAGCTATGG
ACAGGGTGGCATCCGTTCCCTTTATTCAGGCCTAGGATTTACTTTGCTAA
GGGCCGTGCCTGTCGCCAGTGTAATTTTGCCTTGTTACGATGCGACGTAT
TTTTTGCTGTCGCGGTATATGGACGAGTAGGCAGGGAGGGAGAAAAGGGT
AGGGAGTTGGCTTGTGAGGTGTGGGGGAGAGTGTGTAGTTAGCCAAAGGG
AAACGTGATAGAATGGACCATCACAAATATGATGTATTTGGCCACCACTT
GATGCATGTAAAGTATGTAACAAATAAAGGGAGTCTGGATTTGTGG back to topCoding sequence (CDS) from alignment at scaffold_30:238899..240844+ >mRNA_9028 ID=mRNA_9028|Name=jgi.p|Nanoce1779_2|604974|organism=Nannochloropsis oceanica|type=CDS|length=4416bp|location=Sequence derived from alignment at scaffold_30:238899..240844+ (Nannochloropsis oceanica)
ATGACAAGAGTTGTGGCTGGCGAGCTGGATGTGGTCAGCAAGGTGACCTC
CACGCACGGCATTACTGAGGACGATAACCCACTCCTCATGTCGACCAGCC
TGGCCAGCAACCAAGAAGGAGTCCTAGGGTTTGCCTCCGGGCTCGTCGCC
GGGGTAATAGGGGTCTTGACAGGCTATCCTCTCGACACATTGAAGGTCAA
AATGCAAGTATACGGCTCGGGGGCTCAGGTCTCTTTACTGGATGGAAGCG
CAGGGCGGAACCCGTTCAAAGTTGTGAGGCAACTTTTTCGGGGAGTCTTA
CCCCCGCTGGCCAGCACCGGCCTGGTTCAAACGCTCAACTTCGGCGTTTA
CGATAACACCTTGCGATACCTTCGAGCCCAACGAGATCTAGAAGTGAAGG
CTCAAGATGCCGCTGCTTCCGCTGCTGCTTGTGCTTGTGTTCCTTGCGCT
ACTATTGTAAATGGCAACACACTCTCCGATTACTTTCTGGCTGGGTCTAT
GGGGGGCGCGGCGATCAGTGTGATCACCTGCCCGGCGTCGTTGGTGAAGA
TACAGGTGCAGACAGCGACTAACAGTAGCGTTACATACTGGAGCATCTTG
GCGGGTATGCGGCGGAAGGGGCTGGTGGCGGGGTATTATCGTGCATTCCT
TCCCGATATTCTCAACCAAATGTGCGGCCGTGGCGTGTATATGTGCACCT
ACGAAGGACTCAAGCGCGTTATGCGTCCACCAACTGCCTCCTCCGCCGGC
TCTGGCCTCCCCCTTCTCCTCCACCACCAGCAGCAGCAAATGCAGCCACA
AATGCAGTCTCAGCCCCTTTATCAACGTATTGTAGCCGGTGCACTTGCAG
GGATCTGTGGCTGGCTGGTCATTTACCCTTTGGATGTAATAAAAAGTAGG
CTACAAGCGGACGCGTTGGCCCCAGGACACAACAAGTACACCGGCATGAC
CGACTGTTTCCGAGTCAGCTATGGACAGGGTGGCATCCGTTCCCTTTATT
CAGGCCTAGGATTTACTTTGCTAAGGGCCGTGCCTGTCGCCAGTGTAATT
TTGCCTTGTTACGATGCGACGTATTTTTTGCTGTCGCGGTATATGGACGA
GTAGATGACAAGAGTTGTGGCTGGCGAGCTGGATGTGGTCAGCAAGGTGA
CCTCCACGCACGGCATTACTGAGGACGATAACCCACTCCTCATGTCGACC
AGCCTGGCCAGCAACCAAGAAGGAGTCCTAGGGTTTGCCTCCGGGCTCGT
CGCCGGGGTAATAGGGGTCTTGACAGGCTATCCTCTCGACACATTGAAGG
TCAAAATGCAAGTATACGGCTCGGGGGCTCAGGTCTCTTTACTGGATGGA
AGCGCAGGGCGGAACCCGTTCAAAGTTGTGAGGCAACTTTTTCGGGGAGT
CTTACCCCCGCTGGCCAGCACCGGCCTGGTTCAAACGCTCAACTTCGGCG
TTTACGATAACACCTTGCGATACCTTCGAGCCCAACGAGATCTAGAAGTG
AAGGCTCAAGATGCCGCTGCTTCCGCTGCTGCTTGTGCTTGTGTTCCTTG
CGCTACTATTGTAAATGGCAACACACTCTCCGATTACTTTCTGGCTGGGT
CTATGGGGGGCGCGGCGATCAGTGTGATCACCTGCCCGGCGTCGTTGGTG
AAGATACAGGTGCAGACAGCGACTAACAGTAGCGTTACATACTGGAGCAT
CTTGGCGGGTATGCGGCGGAAGGGGCTGGTGGCGGGGTATTATCGTGCAT
TCCTTCCCGATATTCTCAACCAAATGTGCGGCCGTGGCGTGTATATGTGC
ACCTACGAAGGACTCAAGCGCGTTATGCGTCCACCAACTGCCTCCTCCGC
CGGCTCTGGCCTCCCCCTTCTCCTCCACCACCAGCAGCAGCAAATGCAGC
CACAAATGCAGTCTCAGCCCCTTTATCAACGTATTGTAGCCGGTGCACTT
GCAGGGATCTGTGGCTGGCTGGTCATTTACCCTTTGGATGTAATAAAAAG
TAGGCTACAAGCGGACGCGTTGGCCCCAGGACACAACAAGTACACCGGCA
TGACCGACTGTTTCCGAGTCAGCTATGGACAGGGTGGCATCCGTTCCCTT
TATTCAGGCCTAGGATTTACTTTGCTAAGGGCCGTGCCTGTCGCCAGTGT
AATTTTGCCTTGTTACGATGCGACGTATTTTTTGCTGTCGCGGTATATGG
ACGAGTAGATGACAAGAGTTGTGGCTGGCGAGCTGGATGTGGTCAGCAAG
GTGACCTCCACGCACGGCATTACTGAGGACGATAACCCACTCCTCATGTC
GACCAGCCTGGCCAGCAACCAAGAAGGAGTCCTAGGGTTTGCCTCCGGGC
TCGTCGCCGGGGTAATAGGGGTCTTGACAGGCTATCCTCTCGACACATTG
AAGGTCAAAATGCAAGTATACGGCTCGGGGGCTCAGGTCTCTTTACTGGA
TGGAAGCGCAGGGCGGAACCCGTTCAAAGTTGTGAGGCAACTTTTTCGGG
GAGTCTTACCCCCGCTGGCCAGCACCGGCCTGGTTCAAACGCTCAACTTC
GGCGTTTACGATAACACCTTGCGATACCTTCGAGCCCAACGAGATCTAGA
AGTGAAGGCTCAAGATGCCGCTGCTTCCGCTGCTGCTTGTGCTTGTGTTC
CTTGCGCTACTATTGTAAATGGCAACACACTCTCCGATTACTTTCTGGCT
GGGTCTATGGGGGGCGCGGCGATCAGTGTGATCACCTGCCCGGCGTCGTT
GGTGAAGATACAGGTGCAGACAGCGACTAACAGTAGCGTTACATACTGGA
GCATCTTGGCGGGTATGCGGCGGAAGGGGCTGGTGGCGGGGTATTATCGT
GCATTCCTTCCCGATATTCTCAACCAAATGTGCGGCCGTGGCGTGTATAT
GTGCACCTACGAAGGACTCAAGCGCGTTATGCGTCCACCAACTGCCTCCT
CCGCCGGCTCTGGCCTCCCCCTTCTCCTCCACCACCAGCAGCAGCAAATG
CAGCCACAAATGCAGTCTCAGCCCCTTTATCAACGTATTGTAGCCGGTGC
ACTTGCAGGGATCTGTGGCTGGCTGGTCATTTACCCTTTGGATGTAATAA
AAAGTAGGCTACAAGCGGACGCGTTGGCCCCAGGACACAACAAGTACACC
GGCATGACCGACTGTTTCCGAGTCAGCTATGGACAGGGTGGCATCCGTTC
CCTTTATTCAGGCCTAGGATTTACTTTGCTAAGGGCCGTGCCTGTCGCCA
GTGTAATTTTGCCTTGTTACGATGCGACGTATTTTTTGCTGTCGCGGTAT
ATGGACGAGTAGATGACAAGAGTTGTGGCTGGCGAGCTGGATGTGGTCAG
CAAGGTGACCTCCACGCACGGCATTACTGAGGACGATAACCCACTCCTCA
TGTCGACCAGCCTGGCCAGCAACCAAGAAGGAGTCCTAGGGTTTGCCTCC
GGGCTCGTCGCCGGGGTAATAGGGGTCTTGACAGGCTATCCTCTCGACAC
ATTGAAGGTCAAAATGCAAGTATACGGCTCGGGGGCTCAGGTCTCTTTAC
TGGATGGAAGCGCAGGGCGGAACCCGTTCAAAGTTGTGAGGCAACTTTTT
CGGGGAGTCTTACCCCCGCTGGCCAGCACCGGCCTGGTTCAAACGCTCAA
CTTCGGCGTTTACGATAACACCTTGCGATACCTTCGAGCCCAACGAGATC
TAGAAGTGAAGGCTCAAGATGCCGCTGCTTCCGCTGCTGCTTGTGCTTGT
GTTCCTTGCGCTACTATTGTAAATGGCAACACACTCTCCGATTACTTTCT
GGCTGGGTCTATGGGGGGCGCGGCGATCAGTGTGATCACCTGCCCGGCGT
CGTTGGTGAAGATACAGGTGCAGACAGCGACTAACAGTAGCGTTACATAC
TGGAGCATCTTGGCGGGTATGCGGCGGAAGGGGCTGGTGGCGGGGTATTA
TCGTGCATTCCTTCCCGATATTCTCAACCAAATGTGCGGCCGTGGCGTGT
ATATGTGCACCTACGAAGGACTCAAGCGCGTTATGCGTCCACCAACTGCC
TCCTCCGCCGGCTCTGGCCTCCCCCTTCTCCTCCACCACCAGCAGCAGCA
AATGCAGCCACAAATGCAGTCTCAGCCCCTTTATCAACGTATTGTAGCCG
GTGCACTTGCAGGGATCTGTGGCTGGCTGGTCATTTACCCTTTGGATGTA
ATAAAAAGTAGGCTACAAGCGGACGCGTTGGCCCCAGGACACAACAAGTA
CACCGGCATGACCGACTGTTTCCGAGTCAGCTATGGACAGGGTGGCATCC
GTTCCCTTTATTCAGGCCTAGGATTTACTTTGCTAAGGGCCGTGCCTGTC
GCCAGTGTAATTTTGCCTTGTTACGATGCGACGTATTTTTTGCTGTCGCG
GTATATGGACGAGTAG back to top
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