jgi.p|Nanoce1779_2|604966, mRNA_9027 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604966
Unique NamemRNA_9027
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length570
Alignment locationscaffold_30:236982..237551 +

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Properties
Property NameValue
TranscriptId605052
TrackFilteredModels2
ProteinId604966
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:236982..237551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604966gene_9027Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604966mRNA_9027-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9027CDS_9027Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9027 ID=mRNA_9027|Name=jgi.p|Nanoce1779_2|604966|organism=Nannochloropsis oceanica|type=mRNA|length=570bp
GTGGAGGTGGAGGAGGAGGAGGTGGTGGTGGAGGCCCTACGATGGGCGGC
GGTAAGGGGGGCAAGGACAATCGCAGCTCCTTCCCCCGTCCGTGCTGCTG
CTGCTGCTGCTGCTTCTTCTGCCCCTGCCGTCGGTGATAGTCCACCTCAT
CTCTCAGTCTCTCCTCCAGCTTCTCCATTGCTTGCTTCGCTTCCTCCTTG
GCATCTGCCGCATCCTTCTCTAACCTCGCAACCTTCTTCTTCGCTTCCTC
AAGGGCCTCTGCCATGCTCTCCTCCAGCCTGGCAACCTTCTTCCTCTTCT
TGTCCAAGCTCTTTTGCAAGCTCGTGACCAGCGCTTTCAACTCCTTGTTC
TCTCGCTTCAAAGCGCTGGTCTTCTTGACCTTTTTGTTTTGTTGTTTCGT
CTCATTCGCTTTCTCCTTCTCCCCCAACCCCTCCTCTTCTTCCTCCTCGT
CCTCCTCCTCCTCGTCGTCTCCTTTTCCTCGTCTCTCCACCCCGTCGTTT
ACCACTTTCCCCCCTTGCTGTCGGTGCTGCTGATACTGATGTTGTTGTTG
CTGGTACTGCTGGTACTGCT
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protein sequence of jgi.p|Nanoce1779_2|604966

>mRNA_9027-protein ID=mRNA_9027-protein|Name=jgi.p|Nanoce1779_2|604966|organism=Nannochloropsis oceanica|type=polypeptide|length=90bp
MLSSSLATFFLFLSKLFCKLVTSAFNSLFSRFKALVFLTFLFCCFVSFAF
SFSPNPSSSSSSSSSSSSSPFPRLSTPSFTTFPPCCRCC*
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mRNA from alignment at scaffold_30:236982..237551+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9027 ID=mRNA_9027|Name=jgi.p|Nanoce1779_2|604966|organism=Nannochloropsis oceanica|type=mRNA|length=570bp|location=Sequence derived from alignment at scaffold_30:236982..237551+ (Nannochloropsis oceanica)
GTGGAGGTGGAGGAGGAGGAGGTGGTGGTGGAGGCCCTACGATGGGCGGC
GGTAAGGGGGGCAAGGACAATCGCAGCTCCTTCCCCCGTCCGTGCTGCTG
CTGCTGCTGCTGCTTCTTCTGCCCCTGCCGTCGGTGATAGTCCACCTCAT
CTCTCAGTCTCTCCTCCAGCTTCTCCATTGCTTGCTTCGCTTCCTCCTTG
GCATCTGCCGCATCCTTCTCTAACCTCGCAACCTTCTTCTTCGCTTCCTC
AAGGGCCTCTGCCATGCTCTCCTCCAGCCTGGCAACCTTCTTCCTCTTCT
TGTCCAAGCTCTTTTGCAAGCTCGTGACCAGCGCTTTCAACTCCTTGTTC
TCTCGCTTCAAAGCGCTGGTCTTCTTGACCTTTTTGTTTTGTTGTTTCGT
CTCATTCGCTTTCTCCTTCTCCCCCAACCCCTCCTCTTCTTCCTCCTCGT
CCTCCTCCTCCTCGTCGTCTCCTTTTCCTCGTCTCTCCACCCCGTCGTTT
ACCACTTTCCCCCCTTGCTGTCGGTGCTGCTGATACTGATGTTGTTGTTG
CTGGTACTGCTGGTACTGCT
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Coding sequence (CDS) from alignment at scaffold_30:236982..237551+

>mRNA_9027 ID=mRNA_9027|Name=jgi.p|Nanoce1779_2|604966|organism=Nannochloropsis oceanica|type=CDS|length=270bp|location=Sequence derived from alignment at scaffold_30:236982..237551+ (Nannochloropsis oceanica)
ATGCTCTCCTCCAGCCTGGCAACCTTCTTCCTCTTCTTGTCCAAGCTCTT
TTGCAAGCTCGTGACCAGCGCTTTCAACTCCTTGTTCTCTCGCTTCAAAG
CGCTGGTCTTCTTGACCTTTTTGTTTTGTTGTTTCGTCTCATTCGCTTTC
TCCTTCTCCCCCAACCCCTCCTCTTCTTCCTCCTCGTCCTCCTCCTCCTC
GTCGTCTCCTTTTCCTCGTCTCTCCACCCCGTCGTTTACCACTTTCCCCC
CTTGCTGTCGGTGCTGCTGA
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Synonyms
Publications