jgi.p|Nanoce1779_2|673824, mRNA_9026 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|673824
Unique NamemRNA_9026
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1339
Alignment locationscaffold_30:233351..235293 -

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Properties
Property NameValue
TranscriptId673910
TrackFilteredModels2
ProteinId673824
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:233351..235293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673824gene_9026Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673824mRNA_9026-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9026CDS_9026Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9026 ID=mRNA_9026|Name=jgi.p|Nanoce1779_2|673824|organism=Nannochloropsis oceanica|type=mRNA|length=1339bp
ACAGAAGAAACCATACCCCAGTATCATGAGGACCATGGCACCCTGGCTCG
TCCACCTGACTCTTGCCCTGGGGGCTGTGTTGATGTGCCTGCCCGGAGCT
GCCGCACTCAAGGACACGATCAAGAACCGCATGAAGTTGGCGGACAAGTA
CATGGACGAGAACCCCGTGGATGAGGGAATGGAAGCCATGGCCCGACAAC
ACATGCTGAAGATGCCTGACCCAAAGGAGCGTGAGCAGCTCATGAAGAAC
ATGCAACAAATGGACACAGGCAAGGTCCGCACTATTACCCGTCAGGCTAT
GGTGAAGCACTTCACTGTCGATGAGCTCGAGTATCTCATCAATATGTATA
GCACTCACACGGGTAAGACATTGATGAGCAAAATCGGCGCGTATTCGGCC
GAGATTCAGCCTCAGATCGCCGACGTCATGAAGGATATCATGGAGAACAA
CGTAGTGTTTTACCAGGAGCAGGAGAAGCGGGCGCGGGCCGGTGAGTTGG
ACCATGTGACTACTGAATTCGACAAGGAGAAGAAGCCGGAGGCAATTCAG
TTGCCGCCGATGAATCAGAAGATCAAGGATGGAGTTTACATGGGAAGCAG
CATGAAGGATGCCCGGCCAGTGAAGGATGAGGTCTAAATGAATCAACAGA
GAAGAGGGCAAGAGCATTTGTCTAATCATTGATGTGGGGTGAAGAGGAGT
GAAGATTTTCCTCGTCCAATTTTAATGTTCAACTGCGCCCGAAGACGGGA
GAAGGAAAAAATCCATTTTAAAACTCAACAAAAACAACAGAAACAAGAGG
CCAATAAAGAAGAAGAAAAAGGAGGAGGAAGAGAGGAAGCCTATGGCATG
GATGCACGCATAGAGAGGACAGTTGCTGTCGTTCGGTCCCTCTGCATCAG
CGCCATGCGGCGCGGAGACAGTTTATGCGGGGCTGGCTGCAAATCCCCAT
CGGTAGGAGGGGAAAAAAATAAAAAGGAAAACAAGCGAAGAAAAGGAAGA
AAGAAGGCATCACTACCGTCATAAGTCAAAGTACAGAAGACACCTACTCA
AACAGCATGATGACCCACAGGACGAGAGCAGCGATAGGGCGCATGGGAGT
GGAAGCAGTAGCGGCAGCAGCAGCGGCGGCGGCCACCCGCCTCTTCTTGA
AGAGAGAAAGAACCACGACTCAGACTAGCGGAGGGTATTAAAATCTGGCA
ACATCCTTGCCTTCTCCTCTTTACGAGGTGGAGACAGGAACATGGGAGTG
GTACCCGAGCAAGTCAACTGAAAACCATAGAAATTCACCCAAAGAGTACA
TCAAAACAAATAAACCATAAAGCCAGTGGGATAAAAGGC
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protein sequence of jgi.p|Nanoce1779_2|673824

>mRNA_9026-protein ID=mRNA_9026-protein|Name=jgi.p|Nanoce1779_2|673824|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MRTMAPWLVHLTLALGAVLMCLPGAAALKDTIKNRMKLADKYMDENPVDE
GMEAMARQHMLKMPDPKEREQLMKNMQQMDTGKVRTITRQAMVKHFTVDE
LEYLINMYSTHTGKTLMSKIGAYSAEIQPQIADVMKDIMENNVVFYQEQE
KRARAGELDHVTTEFDKEKKPEAIQLPPMNQKIKDGVYMGSSMKDARPVK
DEV*
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mRNA from alignment at scaffold_30:233351..235293-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9026 ID=mRNA_9026|Name=jgi.p|Nanoce1779_2|673824|organism=Nannochloropsis oceanica|type=mRNA|length=1943bp|location=Sequence derived from alignment at scaffold_30:233351..235293- (Nannochloropsis oceanica)
ACAGAAGAAACCATACCCCAGTATCATGAGGACCATGGCACCCTGGCTCG
TCCACCTGACTCTTGCCCTGGGGGCTGTGTTGATGTGCCTGCCCGGAGCT
GCCGCACTCAAGGACACGATCAAGAACCGCATGAAGTTGGCGGACAAGTA
CATGGACGAGAACCCCGTGGATGAGGGAATGGAAGCCATGGCCCGGTACG
GAAGTGGGGTGGATGTGGGTGGGTGCTATGGGGCATCACGAATCAATTGA
GGGGGTGATGCGGATGGCTTGGTTCCTCGCGGACCTGGTCATCGAGGGAG
AAAGCGAATTGAATGACGAGGTATAGGACCAAAACTTCGACACACTCACG
TTACTATGTGCTGACAACTAAATGCTCGCGGTGAGGCGCGCCAAGCAGCA
GGTACTCACCCTCCTTCGCCCCCACTCCCTTCCTCCTCTAGACAACACAT
GCTGAAGATGCCTGACCCAAAGGAGCGTGAGCAGCTCATGAAGAACATGC
AACAAATGGACACAGGCAAGGTCCGCACTATTACCCGTCAGGCTATGGTG
AAGCACTTCACTGTCGATGAGCTCGAGTATCTCATCAATATGTATAGGTA
AGCCCCCTTCCCTTCTCTTTCTCTCCCCTCCCTTCAGTACCATGTTCGTC
GTCTTCAATGCCAAAGCACCAGAAGCTTCTTGAACCAAATGACCAACTGA
GGGTGTCACAAGTCAAGCCATAACGCGTTCCCCTCAATTTTTTAGTGGGG
GTTCTGCTCCCTCCCTTCCAAAATTGCGAGACGGCCAAGGTCTAATGCAG
TGCCTCCCCCGCATAGAGGGTTCGGTGTTTTTCCCTGTCGGAGGGCGCCC
GGTACAGCAACGTGGAGTCTAATAAGATGTAGGAGAATAAAGAGGAAATG
ATCTCATCCATTATACCCCCTCTTCCCCCGTCCCTCTCCTCCCTCCCACC
CGCAGCACTCACACGGGTAAGACATTGATGAGCAAAATCGGCGCGTATTC
GGCCGAGATTCAGCCTCAGATCGCCGACGTCATGAAGGATATCATGGAGA
ACAACGTAGTGTTTTACCAGGAGCAGGAGAAGCGGGCGCGGGCCGGTGAG
TTGGACCATGTGACTACTGAATTCGACAAGGAGAAGAAGCCGGAGGCAAT
TCAGTTGCCGCCGATGAATCAGAAGATCAAGGATGGAGTTTACATGGGAA
GCAGCATGAAGGATGCCCGGCCAGTGAAGGATGAGGTCTAAATGAATCAA
CAGAGAAGAGGGCAAGAGCATTTGTCTAATCATTGATGTGGGGTGAAGAG
GAGTGAAGATTTTCCTCGTCCAATTTTAATGTTCAACTGCGCCCGAAGAC
GGGAGAAGGAAAAAATCCATTTTAAAACTCAACAAAAACAACAGAAACAA
GAGGCCAATAAAGAAGAAGAAAAAGGAGGAGGAAGAGAGGAAGCCTATGG
CATGGATGCACGCATAGAGAGGACAGTTGCTGTCGTTCGGTCCCTCTGCA
TCAGCGCCATGCGGCGCGGAGACAGTTTATGCGGGGCTGGCTGCAAATCC
CCATCGGTAGGAGGGGAAAAAAATAAAAAGGAAAACAAGCGAAGAAAAGG
AAGAAAGAAGGCATCACTACCGTCATAAGTCAAAGTACAGAAGACACCTA
CTCAAACAGCATGATGACCCACAGGACGAGAGCAGCGATAGGGCGCATGG
GAGTGGAAGCAGTAGCGGCAGCAGCAGCGGCGGCGGCCACCCGCCTCTTC
TTGAAGAGAGAAAGAACCACGACTCAGACTAGCGGAGGGTATTAAAATCT
GGCAACATCCTTGCCTTCTCCTCTTTACGAGGTGGAGACAGGAACATGGG
AGTGGTACCCGAGCAAGTCAACTGAAAACCATAGAAATTCACCCAAAGAG
TACATCAAAACAAATAAACCATAAAGCCAGTGGGATAAAAGGC
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Coding sequence (CDS) from alignment at scaffold_30:233351..235293-

>mRNA_9026 ID=mRNA_9026|Name=jgi.p|Nanoce1779_2|673824|organism=Nannochloropsis oceanica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_30:233351..235293- (Nannochloropsis oceanica)
CACTCACACGGGTAAGACATTGATGAGCAAAATCGGCGCGTATTCGGCCG
AGATTCAGCCTCAGATCGCCGACGTCATGAAGGATATCATGGAGAACAAC
GTAGTGTTTTACCAGGAGCAGGAGAAGCGGGCGCGGGCCGGTGAGTTGGA
CCATGTGACTACTGAATTCGACAAGGAGAAGAAGCCGGAGGCAATTCAGT
TGCCGCCGATGAATCAGAAGATCAAGGATGGAGTTTACATGGGAAGCAGC
ATGAAGGATGCCCGGCCAGTGAAGGATGAGGTCTAAACAACACATGCTGA
AGATGCCTGACCCAAAGGAGCGTGAGCAGCTCATGAAGAACATGCAACAA
ATGGACACAGGCAAGGTCCGCACTATTACCCGTCAGGCTATGGTGAAGCA
CTTCACTGTCGATGAGCTCGAGTATCTCATCAATATGTATAGATGAGGAC
CATGGCACCCTGGCTCGTCCACCTGACTCTTGCCCTGGGGGCTGTGTTGA
TGTGCCTGCCCGGAGCTGCCGCACTCAAGGACACGATCAAGAACCGCATG
AAGTTGGCGGACAAGTACATGGACGAGAACCCCGTGGATGAGGGAATGGA
AGCCATGGCCCGCACTCACACGGGTAAGACATTGATGAGCAAAATCGGCG
CGTATTCGGCCGAGATTCAGCCTCAGATCGCCGACGTCATGAAGGATATC
ATGGAGAACAACGTAGTGTTTTACCAGGAGCAGGAGAAGCGGGCGCGGGC
CGGTGAGTTGGACCATGTGACTACTGAATTCGACAAGGAGAAGAAGCCGG
AGGCAATTCAGTTGCCGCCGATGAATCAGAAGATCAAGGATGGAGTTTAC
ATGGGAAGCAGCATGAAGGATGCCCGGCCAGTGAAGGATGAGGTCTAAAC
AACACATGCTGAAGATGCCTGACCCAAAGGAGCGTGAGCAGCTCATGAAG
AACATGCAACAAATGGACACAGGCAAGGTCCGCACTATTACCCGTCAGGC
TATGGTGAAGCACTTCACTGTCGATGAGCTCGAGTATCTCATCAATATGT
ATAGATGAGGACCATGGCACCCTGGCTCGTCCACCTGACTCTTGCCCTGG
GGGCTGTGTTGATGTGCCTGCCCGGAGCTGCCGCACTCAAGGACACGATC
AAGAACCGCATGAAGTTGGCGGACAAGTACATGGACGAGAACCCCGTGGA
TGAGGGAATGGAAGCCATGGCCCGCACTCACACGGGTAAGACATTGATGA
GCAAAATCGGCGCGTATTCGGCCGAGATTCAGCCTCAGATCGCCGACGTC
ATGAAGGATATCATGGAGAACAACGTAGTGTTTTACCAGGAGCAGGAGAA
GCGGGCGCGGGCCGGTGAGTTGGACCATGTGACTACTGAATTCGACAAGG
AGAAGAAGCCGGAGGCAATTCAGTTGCCGCCGATGAATCAGAAGATCAAG
GATGGAGTTTACATGGGAAGCAGCATGAAGGATGCCCGGCCAGTGAAGGA
TGAGGTCTAAACAACACATGCTGAAGATGCCTGACCCAAAGGAGCGTGAG
CAGCTCATGAAGAACATGCAACAAATGGACACAGGCAAGGTCCGCACTAT
TACCCGTCAGGCTATGGTGAAGCACTTCACTGTCGATGAGCTCGAGTATC
TCATCAATATGTATAGATGAGGACCATGGCACCCTGGCTCGTCCACCTGA
CTCTTGCCCTGGGGGCTGTGTTGATGTGCCTGCCCGGAGCTGCCGCACTC
AAGGACACGATCAAGAACCGCATGAAGTTGGCGGACAAGTACATGGACGA
GAACCCCGTGGATGAGGGAATGGAAGCCATGGCCCG
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Synonyms
Publications