jgi.p|Nanoce1779_2|604958, mRNA_9025 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604958
Unique NamemRNA_9025
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length996
Alignment locationscaffold_30:232316..233311 +

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Properties
Property NameValue
TranscriptId605044
TrackFilteredModels2
ProteinId604958
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:232316..233311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604958gene_9025Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604958mRNA_9025-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9025CDS_9025Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9025 ID=mRNA_9025|Name=jgi.p|Nanoce1779_2|604958|organism=Nannochloropsis oceanica|type=mRNA|length=996bp
AACAGCCCACCCCTCCATAATCATGCGCGTCGCTGCCTTTTTCACGGCCA
CCTTGGCCACCGTCTCCGCATTCGTCCCCCGCGCCTCCTTTCCTTCCTCT
TCCACCGTCCGACGCAGCCAGGGCCGCGTGTCCATGGACCTGTCTGGCCT
CGTCGGCTCCGATGTTGAGATCCCTGAGTTCGATCCCCTTGGCTTGAGCA
AGGGTAAGGATGACGAGACCTTGGCGTGGTACCGCGCCGCTGAGCTGAAG
CACGGCCGAGTGTGCATGCTTGCGTCTGTCGGGTACATTGTCCAGGGGCT
GTACCACTTGCCCGATGGGCCGTTCGAGGCGTCCAAGCCTGTGGATGCCC
TGATTAAGGTCTCGACCGAGCGTCCCCTGGCCGCCGTGCAGATCGGCATT
GCCATCGCGGCCTTGGAGGTGCTGGGTGCATCCATCCAGAAGTACACTGC
CCCCGGAGACCTGACATTTGACCCCCTTGGCCTCAAGCCCGAGGACGAGG
AGGAGTTCGCTGAGGTTCAGCTGAAGGAGCTGAAGAACGGCCGATTGGCA
ATGTTGGCGACGGCGGGCTTGGCTGTGCAGGAGTACGTGACGGGGCAGGG
GGCAGTTGAGCAGTTGGTGAGCGGACACTTCTCCCCGTTCGGTGATGGAC
AGGGGGCGTTCTAGACGTGTTGATTACTGCGGAGGGAAGGAGGAAAGCAG
CGGTCGATTGTGTGTTCAGTGAAGAGGAGCGTTTCTGACTTGTTGAATGT
TGTCGATTTCGTAGCAGGAAACAGGGAAAGAGGGTGAAGAGGCTGATGTT
TGTGTTTCGTGAAGGACGAGGATCATGCGGCGCCTTCGCTTTTCCTTTGA
TCTGTTAAGAGCTACAGACAAGGTCAAAGACAAGTCAAAAAAAACAATAG
AAGAAAAAAAGATGAAAAAAAATAATATGAAAGAGCGTTTATTTCAGGAA
AACCCAGCGGCGACGCACTCAAGAAACGGAAGATGAGTAGGTGGAA
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protein sequence of jgi.p|Nanoce1779_2|604958

>mRNA_9025-protein ID=mRNA_9025-protein|Name=jgi.p|Nanoce1779_2|604958|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MRVAAFFTATLATVSAFVPRASFPSSSTVRRSQGRVSMDLSGLVGSDVEI
PEFDPLGLSKGKDDETLAWYRAAELKHGRVCMLASVGYIVQGLYHLPDGP
FEASKPVDALIKVSTERPLAAVQIGIAIAALEVLGASIQKYTAPGDLTFD
PLGLKPEDEEEFAEVQLKELKNGRLAMLATAGLAVQEYVTGQGAVEQLVS
GHFSPFGDGQGAF*
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mRNA from alignment at scaffold_30:232316..233311+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9025 ID=mRNA_9025|Name=jgi.p|Nanoce1779_2|604958|organism=Nannochloropsis oceanica|type=mRNA|length=996bp|location=Sequence derived from alignment at scaffold_30:232316..233311+ (Nannochloropsis oceanica)
AACAGCCCACCCCTCCATAATCATGCGCGTCGCTGCCTTTTTCACGGCCA
CCTTGGCCACCGTCTCCGCATTCGTCCCCCGCGCCTCCTTTCCTTCCTCT
TCCACCGTCCGACGCAGCCAGGGCCGCGTGTCCATGGACCTGTCTGGCCT
CGTCGGCTCCGATGTTGAGATCCCTGAGTTCGATCCCCTTGGCTTGAGCA
AGGGTAAGGATGACGAGACCTTGGCGTGGTACCGCGCCGCTGAGCTGAAG
CACGGCCGAGTGTGCATGCTTGCGTCTGTCGGGTACATTGTCCAGGGGCT
GTACCACTTGCCCGATGGGCCGTTCGAGGCGTCCAAGCCTGTGGATGCCC
TGATTAAGGTCTCGACCGAGCGTCCCCTGGCCGCCGTGCAGATCGGCATT
GCCATCGCGGCCTTGGAGGTGCTGGGTGCATCCATCCAGAAGTACACTGC
CCCCGGAGACCTGACATTTGACCCCCTTGGCCTCAAGCCCGAGGACGAGG
AGGAGTTCGCTGAGGTTCAGCTGAAGGAGCTGAAGAACGGCCGATTGGCA
ATGTTGGCGACGGCGGGCTTGGCTGTGCAGGAGTACGTGACGGGGCAGGG
GGCAGTTGAGCAGTTGGTGAGCGGACACTTCTCCCCGTTCGGTGATGGAC
AGGGGGCGTTCTAGACGTGTTGATTACTGCGGAGGGAAGGAGGAAAGCAG
CGGTCGATTGTGTGTTCAGTGAAGAGGAGCGTTTCTGACTTGTTGAATGT
TGTCGATTTCGTAGCAGGAAACAGGGAAAGAGGGTGAAGAGGCTGATGTT
TGTGTTTCGTGAAGGACGAGGATCATGCGGCGCCTTCGCTTTTCCTTTGA
TCTGTTAAGAGCTACAGACAAGGTCAAAGACAAGTCAAAAAAAACAATAG
AAGAAAAAAAGATGAAAAAAAATAATATGAAAGAGCGTTTATTTCAGGAA
AACCCAGCGGCGACGCACTCAAGAAACGGAAGATGAGTAGGTGGAA
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Coding sequence (CDS) from alignment at scaffold_30:232316..233311+

>mRNA_9025 ID=mRNA_9025|Name=jgi.p|Nanoce1779_2|604958|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_30:232316..233311+ (Nannochloropsis oceanica)
ATGCGCGTCGCTGCCTTTTTCACGGCCACCTTGGCCACCGTCTCCGCATT
CGTCCCCCGCGCCTCCTTTCCTTCCTCTTCCACCGTCCGACGCAGCCAGG
GCCGCGTGTCCATGGACCTGTCTGGCCTCGTCGGCTCCGATGTTGAGATC
CCTGAGTTCGATCCCCTTGGCTTGAGCAAGGGTAAGGATGACGAGACCTT
GGCGTGGTACCGCGCCGCTGAGCTGAAGCACGGCCGAGTGTGCATGCTTG
CGTCTGTCGGGTACATTGTCCAGGGGCTGTACCACTTGCCCGATGGGCCG
TTCGAGGCGTCCAAGCCTGTGGATGCCCTGATTAAGGTCTCGACCGAGCG
TCCCCTGGCCGCCGTGCAGATCGGCATTGCCATCGCGGCCTTGGAGGTGC
TGGGTGCATCCATCCAGAAGTACACTGCCCCCGGAGACCTGACATTTGAC
CCCCTTGGCCTCAAGCCCGAGGACGAGGAGGAGTTCGCTGAGGTTCAGCT
GAAGGAGCTGAAGAACGGCCGATTGGCAATGTTGGCGACGGCGGGCTTGG
CTGTGCAGGAGTACGTGACGGGGCAGGGGGCAGTTGAGCAGTTGGTGAGC
GGACACTTCTCCCCGTTCGGTGATGGACAGGGGGCGTTCTAG
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Synonyms
Publications