jgi.p|Nanoce1779_2|604952, mRNA_9023 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604952
Unique NamemRNA_9023
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length845
Alignment locationscaffold_30:228680..229536 +

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Properties
Property NameValue
TranscriptId605038
TrackFilteredModels2
ProteinId604952
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:228680..229536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604952gene_9023Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604952mRNA_9023-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9023CDS_9023Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9023 ID=mRNA_9023|Name=jgi.p|Nanoce1779_2|604952|organism=Nannochloropsis oceanica|type=mRNA|length=845bp
AGGCTTGAGCACCAGGCACGTTGACAGCAAAAAGTTTACACCTGACTTTT
TCTCCCAAACGCTGCTGGCGTGAATGCGTCATAAGCCTCGCTTCCTGCCT
CTCCTGCCCTCCCTGGTGCTTTTCACAGCCGCAGCCTCCTCGACCATTGC
TACCCTGCCGCTGTTACGCTTTACCTTTCTCTCTGCCGTCTCCTCCTCCT
TCTCCCTCCCCTCGTTGTCATCTTTGATCAAGCGCTCGTGTAGCGCCTCC
ACGTTCGTTTGCCCCTTGTCGCACCAGCATCAGCAGCTCCGTCAGCACGT
ACGTACTCCCTCGCTTGCCAATCCCATCCCTTCACCTTGGTGTCCGATGC
GTTGGTGCAGACAGGCGCAAGCTACTAGCCGGCCATAAACACTCATTTGA
TCTCTATCTTTTTTGTTCTACCTCAGTCAAGCAACTGTCATTCAAAGCCC
CGACGCTTCTTTTCAACTTCATCCTCCTCCTCTGCGGGCACACTTCCCAA
AAAGAACGCCTGGGGCCAACGTATTGTCCCGCTGGACAACCTCCCTCATC
CTGTCCCTCCCTCTCTCCCGTCCTCCTCCTCTTCCTCCTCCTCTGTGGTG
GTGGACTTGACGGACCCCTTGCTGCGACGAGGCTTGCCTGAAATCGGTGA
CATCAAGGAAGGAATCGCTTTTTTTCACTTGCAACAAGAACCGCAGGAAG
GACAGTCGGAGCAGCAGCAGGGGGCAACAAACAGCAGTGACGGCAGTGTA
TTACCCTCCCTATCACTCGCAATTTTTCTCCAGCAAGCAGAGGACGACAC
CACCACACCCAACTATCACCTGCAACAACAACAACAACAACAACA
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protein sequence of jgi.p|Nanoce1779_2|604952

>mRNA_9023-protein ID=mRNA_9023-protein|Name=jgi.p|Nanoce1779_2|604952|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MRHKPRFLPLLPSLVLFTAAASSTIATLPLLRFTFLSAVSSSFSLPSLSS
LIKRSCSASTFVCPLSHQHQQLRQHVRTPSLANPIPSPWCPMRWCRQAQA
TSRP*
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mRNA from alignment at scaffold_30:228680..229536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9023 ID=mRNA_9023|Name=jgi.p|Nanoce1779_2|604952|organism=Nannochloropsis oceanica|type=mRNA|length=857bp|location=Sequence derived from alignment at scaffold_30:228680..229536+ (Nannochloropsis oceanica)
AGGCTTGAGCACCAGGCACGTTGACAGCAAAAAGTTTACACCTGACTTTT
TCTCCCAAACGCTGCTGGCGTGAATGCGTCATAAGCCTCGCTTCCTGCCT
CTCCTGCCCTCCCTGGTGCTTTTCACAGCCGCAGCCTCCTCGACCATTGC
TACCCTGCCGCTGTTACGCTTTACCTTTCTCTCTGCCGTCTCCTCCTCCT
TCTCCCTCCCCTCGTTGTCATCTTTGATCAAGCGCTCGTGTAGCGCCTCC
ACGTTCGTTTGCCCCTTGTCGCACCAGCATCAGCAGCTCCGTCAGCACGT
ACGTACTCCCTCGCTTGCCAATCCCATCCCTTCACCTTGGTGTCCGATGC
GTTGGTGCAGACAGGCGCAAGCTACTAGCCGGCCATAAACACTCATTTGA
TCTCTATCTTTTTTGTTCTACCTCAGTCAAGCAACTGTCATTCAAAGCCC
CGACGCTTCTTTTCAACTTCATCCTCCTCCTCTGCGGGCACACTTCCCAA
AAAGAACGCCTGGGGCCAACGTATTGTCCCGCTGGACAACCTCCCTCATC
CTGTCCCTCCCTCTCTCCCGTCCTCCTCCTCTTCCTCCTCCTCTTCCTCC
TCCTCTGTGGTGGTGGACTTGACGGACCCCTTGCTGCGACGAGGCTTGCC
TGAAATCGGTGACATCAAGGAAGGAATCGCTTTTTTTCACTTGCAACAAG
AACCGCAGGAAGGACAGTCGGAGCAGCAGCAGGGGGCAACAAACAGCAGT
GACGGCAGTGTATTACCCTCCCTATCACTCGCAATTTTTCTCCAGCAAGC
AGAGGACGACACCACCACACCCAACTATCACCTGCAACAACAACAACAAC
AACAACA
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Coding sequence (CDS) from alignment at scaffold_30:228680..229536+

>mRNA_9023 ID=mRNA_9023|Name=jgi.p|Nanoce1779_2|604952|organism=Nannochloropsis oceanica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_30:228680..229536+ (Nannochloropsis oceanica)
ATGCGTCATAAGCCTCGCTTCCTGCCTCTCCTGCCCTCCCTGGTGCTTTT
CACAGCCGCAGCCTCCTCGACCATTGCTACCCTGCCGCTGTTACGCTTTA
CCTTTCTCTCTGCCGTCTCCTCCTCCTTCTCCCTCCCCTCGTTGTCATCT
TTGATCAAGCGCTCGTGTAGCGCCTCCACGTTCGTTTGCCCCTTGTCGCA
CCAGCATCAGCAGCTCCGTCAGCACGTACGTACTCCCTCGCTTGCCAATC
CCATCCCTTCACCTTGGTGTCCGATGCGTTGGTGCAGACAGGCGCAAGCT
ACTAGCCGGCCATAA
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Synonyms
Publications